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CmoCh20G004110 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G004110
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTropomyosin
Genome locationCmo_Chr20:1962617..1965163
RNA-Seq ExpressionCmoCh20G004110
SyntenyCmoCh20G004110
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061866.1 tropomyosin [Cucumis melo var. makuwa]1.0e-4768.84Show/hide
Query:  PPLTAELLSFKRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRL-----------------------------LDKGTHEEDISREGSSTME-SSK
        P LTAELLS K QLAKE++RAESLSAE LELST+LQQ TQAYNGLTRL                              +   +EEDISRE SSTME SSK
Subjt:  PPLTAELLSFKRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRL-----------------------------LDKGTHEEDISREGSSTME-SSK

Query:  ICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGG
        ICFCIPRHKN HK DGGSEKSSKSKPSRRKS  G+KEGKHSS SDSSGNGN+GDA AA  +A AVAA+AVTAVTMDA+D DDGGSTHVHGGEGG GG G
Subjt:  ICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGG

KAG6570682.1 hypothetical protein SDJN03_29597, partial [Cucurbita argyrosperma subsp. sororia]1.0e-7197.02Show/hide
Query:  PPLTAELLSFKRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRLLDKGTHEEDISREGSSTMESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRK
        PPLTAE LSFKRQLAKEQNRAE+LSAEALELSTQLQQTTQAYNGLT LLDKGTHEEDISREGSSTMESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRK
Subjt:  PPLTAELLSFKRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRLLDKGTHEEDISREGSSTMESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRK

Query:  SGAKEGKHSSSSDSSGNGNTGDASAAGSAAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD
        SGAKEGKHSSSSDSSGNGNTG ASAAGS AAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD
Subjt:  SGAKEGKHSSSSDSSGNGNTGDASAAGSAAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD

KAG6605437.1 hypothetical protein SDJN03_02754, partial [Cucurbita argyrosperma subsp. sororia]1.4e-4465.35Show/hide
Query:  PPLTAELLSFKRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRL-----------------------------LDKGTHEEDISREGSSTMESSKI
        PP T++LLS K QLAKEQ+RAE LSAE LELST+LQQ TQAYNGLTRL                              + G +EE+ISRE SSTMESSKI
Subjt:  PPLTAELLSFKRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRL-----------------------------LDKGTHEEDISREGSSTMESSKI

Query:  CFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAAVAAIAV-TAVTMDAVD--EDDGGSTHVHGGEGGGGGG
        CFCIPRHKN  K DGGSEKSSKSKPSRRKS   AK GKHS SSDSSG+GNTGDA+ + SA+AAVAA+AV  A T+ AVD  EDDGGS+H HGGEGGGGGG
Subjt:  CFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAAVAAIAV-TAVTMDAVD--EDDGGSTHVHGGEGGGGGG

Query:  GD
        GD
Subjt:  GD

KAG7010529.1 hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-5587.97Show/hide
Query:  KRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRLLDKGTHEEDISREGSSTMESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKSGAKEGKHSS
        +RQLAKEQNRAESLSAEALE                 LLDKGTHEEDISREGSSTMESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKSGAKEGKHSS
Subjt:  KRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRLLDKGTHEEDISREGSSTMESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKSGAKEGKHSS

Query:  SSDSSGNGNTGDASAAGSAAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD
        SSDSSGNGNTGDASAAGS AAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD
Subjt:  SSDSSGNGNTGDASAAGSAAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD

TYK15390.1 tropomyosin [Cucumis melo var. makuwa]1.0e-4768.84Show/hide
Query:  PPLTAELLSFKRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRL-----------------------------LDKGTHEEDISREGSSTME-SSK
        P LTAELLS K QLAKE++RAESLSAE LELST+LQQ TQAYNGLTRL                              +   +EEDISRE SSTME SSK
Subjt:  PPLTAELLSFKRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRL-----------------------------LDKGTHEEDISREGSSTME-SSK

Query:  ICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGG
        ICFCIPRHKN HK DGGSEKSSKSKPSRRKS  G+KEGKHSS SDSSGNGN+GDA AA  +A AVAA+AVTAVTMDA+D DDGGSTHVHGGEGG GG G
Subjt:  ICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGG

TrEMBL top hitse value%identityAlignment
A0A0A0KFD0 Uncharacterized protein6.3e-2781.55Show/hide
Query:  SSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGG
        SSKICFCIPRHKN HK DGGSEKSSKSKPSRRKS   +KEGKHSSSSDSSGNGN G+  AA  +A AVAA+AVTAVTMDA+D DDGGSTHVHGGEGG G 
Subjt:  SSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGG

Query:  GGD
        GGD
Subjt:  GGD

A0A0A0KH80 Uncharacterized protein2.4e-1085.42Show/hide
Query:  PPLTAELLSFKRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRL
        PPL AELLS K QLAKEQ+RAESLSAE LELST+LQQ TQAYNGLTRL
Subjt:  PPLTAELLSFKRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRL

A0A5A7V5U9 Tropomyosin5.0e-4868.84Show/hide
Query:  PPLTAELLSFKRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRL-----------------------------LDKGTHEEDISREGSSTME-SSK
        P LTAELLS K QLAKE++RAESLSAE LELST+LQQ TQAYNGLTRL                              +   +EEDISRE SSTME SSK
Subjt:  PPLTAELLSFKRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRL-----------------------------LDKGTHEEDISREGSSTME-SSK

Query:  ICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGG
        ICFCIPRHKN HK DGGSEKSSKSKPSRRKS  G+KEGKHSS SDSSGNGN+GDA AA  +A AVAA+AVTAVTMDA+D DDGGSTHVHGGEGG GG G
Subjt:  ICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGG

A0A5D3CVK1 Tropomyosin5.0e-4868.84Show/hide
Query:  PPLTAELLSFKRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRL-----------------------------LDKGTHEEDISREGSSTME-SSK
        P LTAELLS K QLAKE++RAESLSAE LELST+LQQ TQAYNGLTRL                              +   +EEDISRE SSTME SSK
Subjt:  PPLTAELLSFKRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRL-----------------------------LDKGTHEEDISREGSSTME-SSK

Query:  ICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGG
        ICFCIPRHKN HK DGGSEKSSKSKPSRRKS  G+KEGKHSS SDSSGNGN+GDA AA  +A AVAA+AVTAVTMDA+D DDGGSTHVHGGEGG GG G
Subjt:  ICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAGSAAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGG

A0A6J1D515 circumsporozoite protein-like1.0e-2172.48Show/hide
Query:  MESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAG----SAAAAVAAIAVTAVTMDAVDEDDGGSTHVHGG
        MES+KICFCIPRHKN HK +GGSEKSSKSKPSRRKS  G K GKHSSSSDSSG+GNT   +AAG    +A AAV  +  TA TMDAV EDDGGS H HGG
Subjt:  MESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASAAG----SAAAAVAAIAVTAVTMDAVDEDDGGSTHVHGG

Query:  EGGGGGGGD
         GG GGGGD
Subjt:  EGGGGGGGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G59210.1 myosin heavy chain-related1.7e-0869.77Show/hide
Query:  ELLSFKRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRL
        + LS K +LAKEQ+RAESLSA+ L+LS QLQQ TQAYNGL R+
Subjt:  ELLSFKRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRL

AT5G59210.2 myosin heavy chain-related1.7e-0869.77Show/hide
Query:  ELLSFKRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRL
        + LS K +LAKEQ+RAESLSA+ L+LS QLQQ TQAYNGL R+
Subjt:  ELLSFKRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCCATTAACAGCTGAACTTCTCTCCTTCAAGCGCCAACTTGCAAAAGAACAGAACAGAGCAGAGTCGCTATCAGCAGAAGCATTGGAGCTGTCAACGCAACTCCA
GCAGACTACACAGGCATATAACGGGCTTACACGCCTGTTGGATAAAGGAACTCATGAGGAAGACATAAGCAGGGAAGGAAGCTCAACAATGGAGTCCTCAAAGATCTGTT
TCTGTATTCCTCGCCATAAGAACAGCCACAAAGTTGATGGAGGATCGGAGAAATCTTCCAAATCAAAGCCTTCTCGCCGCAAATCTGGTGCCAAAGAAGGTAAGCATTCC
TCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGCAGGCAGCGCCGCCGCCGCTGTGGCTGCCATTGCGGTCACGGCGGTGACCATGGATGCCGT
TGATGAGGATGATGGTGGCAGCACTCATGTCCATGGCGGTGAGGGAGGTGGCGGAGGCGGTGGAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTCCATTAACAGCTGAACTTCTCTCCTTCAAGCGCCAACTTGCAAAAGAACAGAACAGAGCAGAGTCGCTATCAGCAGAAGCATTGGAGCTGTCAACGCAACTCCA
GCAGACTACACAGGCATATAACGGGCTTACACGCCTGTTGGATAAAGGAACTCATGAGGAAGACATAAGCAGGGAAGGAAGCTCAACAATGGAGTCCTCAAAGATCTGTT
TCTGTATTCCTCGCCATAAGAACAGCCACAAAGTTGATGGAGGATCGGAGAAATCTTCCAAATCAAAGCCTTCTCGCCGCAAATCTGGTGCCAAAGAAGGTAAGCATTCC
TCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGCAGGCAGCGCCGCCGCCGCTGTGGCTGCCATTGCGGTCACGGCGGTGACCATGGATGCCGT
TGATGAGGATGATGGTGGCAGCACTCATGTCCATGGCGGTGAGGGAGGTGGCGGAGGCGGTGGAGATTAGGGAATTGGAGCAGGATCGGAGTGTTTATTTATTATTGTTC
TCTGTTCTTGGTGATATCCTTCTGCTGGTTCCTTCCTGAGTTTTTATCATTTGTTTGAATTACAGTATATGACCATCTGGGTCTTAGTTGCTTCTGTTATATATACATAT
ACATATACATATATATATATATATAGAAAACTTTGTAACATCTTGAAATTGTGGCTGTTTGTATCTGTCTTCTTCTTATACTCTGTTCTGAACTGTCTATTTAGCTCATT
GGTTCATAAGGAACTCAAGTTGTGATTTTTGTTTGTGGATAATAAAAAAATATGTGAGATCTTAAGTTGGTCGAAGAGGTGAATGAAATATTTATTGTAAGGGTGTGGAA
ACCTCTCTCTCTAATAGACGCGTTTCAAAACTGTAAAGTTAAGGTAGACAATATCTATCTGTAGTGGGCTTGGCTATTACATGAATATATGCTCTTACATGAAATTTAAT
TCAATTTAAGAGATTTGATTTTAATATCTATGTACGAGAAAAAATGATAAATTGAGATAAGTTGGACAATATCATACTATTCACAATTGATTCTTTATGATCGCAGCCAT
TTGGAGAAGAGACGTTGACCTGACCACGTTGGTCAGTATTTGGTCTCTGTTCGCCTTTGGGTTTCTCAGATATCCATGACTAGGAATTGGATTCGAGCAGTACACAAATA
GTCCC
Protein sequenceShow/hide protein sequence
MPPLTAELLSFKRQLAKEQNRAESLSAEALELSTQLQQTTQAYNGLTRLLDKGTHEEDISREGSSTMESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKSGAKEGKHS
SSSDSSGNGNTGDASAAGSAAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD