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CmoCh20G004130 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G004130
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionMajor viral transcription factor
Genome locationCmo_Chr20:1972964..1973383
RNA-Seq ExpressionCmoCh20G004130
SyntenyCmoCh20G004130
Gene Ontology termsNA
InterPro domainsIPR040381 - Uncharacterized protein At4g14450-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570684.1 hypothetical protein SDJN03_29599, partial [Cucurbita argyrosperma subsp. sororia]7.1e-7199.28Show/hide
Query:  MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNRMLANGNGVNSGGNGDQRG
        MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFP+TEGNRMLANGNGVNSGGNGDQRG
Subjt:  MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNRMLANGNGVNSGGNGDQRG

Query:  IVFASPGGWQHPAVAATYADPSTLFTFFQSKCIITSSTP
        IVFASPGGWQHPAVAATYADPSTLFTFFQSKCIITSSTP
Subjt:  IVFASPGGWQHPAVAATYADPSTLFTFFQSKCIITSSTP

KAG6605440.1 hypothetical protein SDJN03_02757, partial [Cucurbita argyrosperma subsp. sororia]1.9e-4772.66Show/hide
Query:  MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNRMLANGNGVNSGGNGDQRG
        MNANQ+ VVDF  AAM+ +   R+PKPPTRLQKQAPA L+LDQL+SVSM S   +  SK +LPLLSPLPSSPQPFP+TEGNR  ANGN V+ GG GDQRG
Subjt:  MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNRMLANGNGVNSGGNGDQRG

Query:  IVFASPGGWQHPAVAATYADPSTLFTFFQSKCIITSSTP
        I FA PGGWQHPAVA T+ADPSTLFTFFQS+CI+ S TP
Subjt:  IVFASPGGWQHPAVAATYADPSTLFTFFQSKCIITSSTP

XP_011657141.1 uncharacterized protein LOC105435808 [Cucumis sativus]5.5e-4769.29Show/hide
Query:  MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNRMLANGNGVN-SGGNGDQR
        M+ANQ+ VVDFLR +M+N+   R+PKPPTRLQKQAPA L+LDQLSSVSM S   +  SK +LPLLSPLP SPQP P+ +GNR+ ANGN V+  GGNGDQR
Subjt:  MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNRMLANGNGVN-SGGNGDQR

Query:  GIVFASPGGWQHPAVAATYADPSTLFTFFQSKCIITSSTP
        GI F +PGGWQHPAVAAT+ DPSTLFTFFQS+C+++S+TP
Subjt:  GIVFASPGGWQHPAVAATYADPSTLFTFFQSKCIITSSTP

XP_023512816.1 uncharacterized protein LOC111777440 [Cucurbita pepo subsp. pepo]5.8e-6592.81Show/hide
Query:  MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNRMLANGNGVNSGGNGDQRG
        MNANQSAVVDFLRAAMDN+RGGRIPKPPTRLQKQAPAGLYLDQLSSVSM SVGTE  SKTVLPLLSPLPSSPQPF +TEGNRML NGNG +SGGNGDQRG
Subjt:  MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNRMLANGNGVNSGGNGDQRG

Query:  IVFASPGGWQHPAVAATYADPSTLFTFFQSKCIITSSTP
        IVFASPGGWQHPAVAATYADPSTLFTFFQSKCIITS+TP
Subjt:  IVFASPGGWQHPAVAATYADPSTLFTFFQSKCIITSSTP

XP_038902307.1 uncharacterized protein LOC120088941 [Benincasa hispida]7.6e-4971.43Show/hide
Query:  MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNRMLANGNGVN-SGGNGDQR
        MNANQ+ V+DFLR +M+N+   R+PKPPTRLQKQAPA L+LDQLSSVSM S   +T SK +LPLLSPLP SPQP P+ +GNR+ ANGN  +  GGNGDQR
Subjt:  MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNRMLANGNGVN-SGGNGDQR

Query:  GIVFASPGGWQHPAVAATYADPSTLFTFFQSKCIITSSTP
        GI FA+PGGWQHPAVAAT+ DPSTLFTFFQS+CI+TS+TP
Subjt:  GIVFASPGGWQHPAVAATYADPSTLFTFFQSKCIITSSTP

TrEMBL top hitse value%identityAlignment
A0A0A0KBQ7 Uncharacterized protein2.6e-4769.29Show/hide
Query:  MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNRMLANGNGVN-SGGNGDQR
        M+ANQ+ VVDFLR +M+N+   R+PKPPTRLQKQAPA L+LDQLSSVSM S   +  SK +LPLLSPLP SPQP P+ +GNR+ ANGN V+  GGNGDQR
Subjt:  MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNRMLANGNGVN-SGGNGDQR

Query:  GIVFASPGGWQHPAVAATYADPSTLFTFFQSKCIITSSTP
        GI F +PGGWQHPAVAAT+ DPSTLFTFFQS+C+++S+TP
Subjt:  GIVFASPGGWQHPAVAATYADPSTLFTFFQSKCIITSSTP

A0A5A7V856 Uncharacterized protein2.0e-4271.2Show/hide
Query:  MDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNRMLANGNGV-NSGGNGDQRGIVFASPGGWQHPAV
        M+N+   R+PKPPTRLQKQAPA L+LDQLSSVSM S   +TYSK +LPLLSPLP SPQP P+ +GNR+ A GN V   GGNGDQRGI F +PGGWQHPAV
Subjt:  MDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNRMLANGNGV-NSGGNGDQRGIVFASPGGWQHPAV

Query:  AATYADPSTLFTFFQSKCIITSSTP
        AAT+ DPSTLFTFFQS+CI++S+TP
Subjt:  AATYADPSTLFTFFQSKCIITSSTP

A0A5N5LE39 Uncharacterized protein1.0e-1446.9Show/hide
Query:  RIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNRMLANGNGVNSG-GNGDQRGIVFASPGGWQHPAVAATYADP
        R+ KPPTRLQKQAP GL LDQLS+  +P+   +    T +P LSPL  SP P P            G + G G  D     ++    WQHPAVA  Y +P
Subjt:  RIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNRMLANGNGVNSG-GNGDQRGIVFASPGGWQHPAVAATYADP

Query:  STLFTFFQSKCII
        S+LFTFFQSKC++
Subjt:  STLFTFFQSKCII

A0A6J1D5B7 uncharacterized protein LOC1110170711.2e-2364.15Show/hide
Query:  MNANQSAVVDFLRAAMDNDR--GGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNR----MLANGNGVNSGG
        MNANQSAV+DFLRA+M+ +     RIPKPPTRLQKQAPA L+LDQ+SS SM   G ET SK +LPLLSPLP SPQP+P+TE N       AN N V+  G
Subjt:  MNANQSAVVDFLRAAMDNDR--GGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNR----MLANGNGVNSGG

Query:  NGDQRG
         GDQRG
Subjt:  NGDQRG

B9HPD2 Uncharacterized protein1.7e-1446.43Show/hide
Query:  RIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNRMLANGNGVNSGGNGDQRGIVFASPGGWQHPAVAATYADPS
        ++ KPPTRLQKQAP  L LDQLS+  +P+    +   T +PLLSPL  SP P P            G N  G  D     ++    WQHPAVA+ Y +PS
Subjt:  RIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNRMLANGNGVNSGGNGDQRGIVFASPGGWQHPAVAATYADPS

Query:  TLFTFFQSKCII
        +LFTFFQSKC++
Subjt:  TLFTFFQSKCII

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G07473.1 unknown protein3.6e-0444Show/hide
Query:  PKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQP
        P+ PTRLQKQAP  L+L  +         ++    T +PLLSPL  SP P
Subjt:  PKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCAAATCAATCTGCTGTCGTTGATTTCCTCAGAGCAGCAATGGACAACGACCGCGGAGGCAGAATACCTAAACCTCCGACCAGGTTGCAGAAGCAGGCGCCGGC
CGGTCTTTATCTCGATCAGCTTTCGAGTGTCTCAATGCCTTCTGTTGGTACCGAAACTTATTCGAAGACGGTTCTTCCTCTGCTTTCGCCGCTCCCTTCGTCGCCACAGC
CTTTTCCTGATACTGAGGGAAATAGAATGTTGGCGAACGGAAATGGTGTAAACAGCGGCGGAAATGGCGATCAAAGAGGTATAGTTTTCGCATCTCCTGGTGGCTGGCAA
CATCCGGCGGTGGCTGCGACATACGCCGATCCTTCCACTCTGTTTACTTTCTTTCAATCGAAGTGCATCATAACCAGTAGCACGCCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGCAAATCAATCTGCTGTCGTTGATTTCCTCAGAGCAGCAATGGACAACGACCGCGGAGGCAGAATACCTAAACCTCCGACCAGGTTGCAGAAGCAGGCGCCGGC
CGGTCTTTATCTCGATCAGCTTTCGAGTGTCTCAATGCCTTCTGTTGGTACCGAAACTTATTCGAAGACGGTTCTTCCTCTGCTTTCGCCGCTCCCTTCGTCGCCACAGC
CTTTTCCTGATACTGAGGGAAATAGAATGTTGGCGAACGGAAATGGTGTAAACAGCGGCGGAAATGGCGATCAAAGAGGTATAGTTTTCGCATCTCCTGGTGGCTGGCAA
CATCCGGCGGTGGCTGCGACATACGCCGATCCTTCCACTCTGTTTACTTTCTTTCAATCGAAGTGCATCATAACCAGTAGCACGCCGTGA
Protein sequenceShow/hide protein sequence
MNANQSAVVDFLRAAMDNDRGGRIPKPPTRLQKQAPAGLYLDQLSSVSMPSVGTETYSKTVLPLLSPLPSSPQPFPDTEGNRMLANGNGVNSGGNGDQRGIVFASPGGWQ
HPAVAATYADPSTLFTFFQSKCIITSSTP