CuGenDBv2

Gene ID	CmoCh20G004260
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	MPP6 domain-containing protein
Genome location	Cmo_Chr20:2010952..2012995
RNA-Seq Expression	CmoCh20G004260
Synteny	CmoCh20G004260
Gene Ontology terms	GO:0000460 - maturation of 5.8S rRNA (biological process)
InterPro domains	IPR019324 - M-phase phosphoprotein 6

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6570693.1 hypothetical protein SDJN03_29608, partial [Cucurbita argyrosperma subsp. sororia]

3.1e-96

94.87

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Query:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN
        MAKRELSNTLRNLKFMQRAGQRE+QPK+EEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEE+ASLGQHEIPGSSSGNHSGN
Subjt:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN

Query:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG
        LSS       RDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG
Subjt:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG

XP_022943951.1 uncharacterized protein LOC111448524 isoform X1 [Cucurbita moschata]

1.2e-103

100

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Query:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN
        MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN
Subjt:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN

Query:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG
        LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG
Subjt:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG

XP_022943952.1 uncharacterized protein LOC111448524 isoform X2 [Cucurbita moschata]

3.6e-97

96.41

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Query:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN
        MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN
Subjt:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN

Query:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG
        LSS       RDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG
Subjt:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG

XP_022986944.1 uncharacterized protein LOC111484532 isoform X1 [Cucurbita maxima]

2.6e-95

92.82

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Query:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN
        MAKRELSNTLRNLKFMQRAGQRE+ PK+EEEVK DENFFPSSTIIRKCVVLVEGD HPG FKGRMSFQSFNPSIDRLNE++ASL QHEIPGSS GNH GN
Subjt:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN

Query:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG
        LSSRQK LFPRDNGSSQNEASCSN DEKNCEANEDLKRKQS VVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG
Subjt:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG

XP_023512011.1 uncharacterized protein LOC111776852 isoform X1 [Cucurbita pepo subsp. pepo]

3.9e-99

95.9

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Query:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN
        MAKRELSNTLRNLKFMQRAGQRE+QPK+EEEVK DENFFPSSTIIRKCVVLVEG PHPGAFKGRMSFQSFNPSIDRLNEE+ASLGQHEIPGSSSGNHSGN
Subjt:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN

Query:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG
        LSSRQK LFPRDNGSSQNE  CSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG
Subjt:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1FT40 uncharacterized protein LOC111448524 isoform X1

5.6e-104

100

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Query:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN
        MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN
Subjt:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN

Query:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG
        LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG
Subjt:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG

A0A6J1FUG1 uncharacterized protein LOC111448524 isoform X2

1.8e-97

96.41

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Query:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN
        MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN
Subjt:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN

Query:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG
        LSS       RDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG
Subjt:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG

A0A6J1G7T2 uncharacterized protein LOC111451657

2.0e-77

78.97

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Query:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN
        MAKRE+SNTLRNLKFMQRA Q+E+QPK+EEEVKP+EN FPSS IIRKCVVLVEGDPHPGA +GR+SFQSFNPSID+LNEE+ASLGQ E P  SSGNHS N
Subjt:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN

Query:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG
        +SS       R+NGSS+NEA  SN DEKNCE N DLKRKQSEVVS+GRHPTKFP+SGRDNQQSSF++GKG  KKPKGE LDWNVLRPSKTPNK G
Subjt:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG

A0A6J1JFF6 uncharacterized protein LOC111484532 isoform X2

1.3e-89

89.74

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Query:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN
        MAKRELSNTLRNLKFMQRAGQRE+ PK+EEEVK DENFFPSSTIIRKCVVLVEGD HPG FKGRMSFQSFNPSIDRLNE++ASL QHEIPGSS GNH GN
Subjt:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN

Query:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG
        LSS       RDNGSSQNEASCSN DEKNCEANEDLKRKQS VVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG
Subjt:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG

A0A6J1JHH4 uncharacterized protein LOC111484532 isoform X1

1.3e-95

92.82

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Query:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN
        MAKRELSNTLRNLKFMQRAGQRE+ PK+EEEVK DENFFPSSTIIRKCVVLVEGD HPG FKGRMSFQSFNPSIDRLNE++ASL QHEIPGSS GNH GN
Subjt:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN

Query:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG
        LSSRQK LFPRDNGSSQNEASCSN DEKNCEANEDLKRKQS VVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG
Subjt:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G59460.1 scarecrow-like transcription factor 11 (SCL11)

1.2e-29

46.39

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Query:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN
        MAKRE+S+TLRNLKFMQR+  + ++ K +EE +P+ +F    T+ +KCVV+ + DP PGA  GRMSFQSFNPSI++L+EE  + G    P SSS N    
Subjt:  MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGN

Query:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRH-PTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNK
                       S +E   S + E + E + DLKRKQSEVVS+ ++ P K PRS  D    S   G G  KKPK +K+DW+VLRP K   K
Subjt:  LSSRQKILFPRDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRH-PTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGAAGCGCGAGCTTTCCAATACATTAAGGAACTTGAAGTTCATGCAAAGGGCGGGTCAGAGAGAGGATCAACCTAAGAGAGAGGAAGAAGTAAAGCCTGATGAGAA
TTTCTTTCCTTCGAGTACTATAATTAGAAAGTGTGTAGTTTTAGTTGAAGGAGATCCTCATCCAGGCGCTTTTAAAGGTCGAATGTCATTTCAAAGCTTTAATCCTTCAA
TTGATAGACTCAATGAAGAAATAGCTAGCTTAGGCCAGCATGAAATTCCTGGCTCTTCATCTGGAAATCACAGTGGAAACCTTTCATCAAGACAAAAAATTTTGTTCCCC
AGAGATAATGGATCTTCACAAAATGAAGCCTCCTGCTCAAACATTGATGAAAAAAATTGTGAGGCTAATGAGGATCTTAAAAGGAAACAATCTGAAGTAGTTTCTGATGG
ACGGCATCCAACTAAGTTTCCAAGAAGTGGTCGGGACAACCAGCAATCATCATTTAGTCATGGTAAAGGACCTTCCAAAAAACCAAAGGGTGAAAAGCTGGACTGGAATG
TTCTTAGGCCCTCCAAGACTCCCAATAAGAGTGGATAA

mRNA sequence

Show/hide mRNA sequence

GCGCGCGCTCGCGAACGCGAAAGTGGAGGAGACGTAGAAAATTGATTAGACATTGGAAGTTCGTTGTTCGAGCTTTCCTTTTCTCTAATCGTTATGGCGAAGCGCGAGCT
TTCCAATACATTAAGGAACTTGAAGTTCATGCAAAGGGCGGGTCAGAGAGAGGATCAACCTAAGAGAGAGGAAGAAGTAAAGCCTGATGAGAATTTCTTTCCTTCGAGTA
CTATAATTAGAAAGTGTGTAGTTTTAGTTGAAGGAGATCCTCATCCAGGCGCTTTTAAAGGTCGAATGTCATTTCAAAGCTTTAATCCTTCAATTGATAGACTCAATGAA
GAAATAGCTAGCTTAGGCCAGCATGAAATTCCTGGCTCTTCATCTGGAAATCACAGTGGAAACCTTTCATCAAGACAAAAAATTTTGTTCCCCAGAGATAATGGATCTTC
ACAAAATGAAGCCTCCTGCTCAAACATTGATGAAAAAAATTGTGAGGCTAATGAGGATCTTAAAAGGAAACAATCTGAAGTAGTTTCTGATGGACGGCATCCAACTAAGT
TTCCAAGAAGTGGTCGGGACAACCAGCAATCATCATTTAGTCATGGTAAAGGACCTTCCAAAAAACCAAAGGGTGAAAAGCTGGACTGGAATGTTCTTAGGCCCTCCAAG
ACTCCCAATAAGAGTGGATAA

Protein sequence

Show/hide protein sequence

MAKRELSNTLRNLKFMQRAGQREDQPKREEEVKPDENFFPSSTIIRKCVVLVEGDPHPGAFKGRMSFQSFNPSIDRLNEEIASLGQHEIPGSSSGNHSGNLSSRQKILFP
RDNGSSQNEASCSNIDEKNCEANEDLKRKQSEVVSDGRHPTKFPRSGRDNQQSSFSHGKGPSKKPKGEKLDWNVLRPSKTPNKSG

CmoCh20G004260 (gene) of Cucurbita moschata (Rifu) v1 genome