; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh20G004840 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G004840
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionWUSCHEL-related homeobox 3
Genome locationCmo_Chr20:2262359..2263446
RNA-Seq ExpressionCmoCh20G004840
SyntenyCmoCh20G004840
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0099402 - plant organ development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001356 - Homeobox domain
IPR009057 - Homeobox-like domain superfamily
IPR044555 - Protein WUSCHEL-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570743.1 WUSCHEL-related homeobox 3, partial [Cucurbita argyrosperma subsp. sororia]4.2e-4661.5Show/hide
Query:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQ--------
        MSP AAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQ        
Subjt:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQ--------

Query:  ----------------PPPAFPA---------------------------AATPASNSF----------SGWVKEEEGGSGNGGWGN
                        PPP  P                            A T   N            +GWVKEEEGGSGNGGWGN
Subjt:  ----------------PPPAFPA---------------------------AATPASNSF----------SGWVKEEEGGSGNGGWGN

KAG7010589.1 WUSCHEL-related homeobox 3, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-4981.02Show/hide
Query:  MSP-AAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQPPPA---
        MSP AAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIK+Q       
Subjt:  MSP-AAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQPPPA---

Query:  -------FPAAATPASNSFSGWVKEEEGGSGNGGWGN
               FP  A        GWVKEEEGGSGNGGWGN
Subjt:  -------FPAAATPASNSFSGWVKEEEGGSGNGGWGN

XP_004148244.1 WUSCHEL-related homeobox 3 [Cucumis sativus]1.4e-3851.78Show/hide
Query:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQ--------
        MSP    ++ TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLS YGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFF+KRQ        
Subjt:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQ--------

Query:  ------------PPPAFPAAATPASNS---------------------------------------------------FSGWVKEEEGGSGNGGWGN
                     P   P   +P+S                                                      + WVKEEEG SGNGGWGN
Subjt:  ------------PPPAFPAAATPASNS---------------------------------------------------FSGWVKEEEGGSGNGGWGN

XP_022944088.1 putative WUSCHEL-related homeobox 2 [Cucurbita moschata]2.9e-4762.5Show/hide
Query:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQP-------
        MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQ        
Subjt:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQP-------

Query:  -----------PPAFPA------------------------------AATPASNSF----------SGWVKEEEGGSGNGGWGN
                   PP  P                               A T   N            +GWVKEEEGGSGNGGWGN
Subjt:  -----------PPAFPA------------------------------AATPASNSF----------SGWVKEEEGGSGNGGWGN

XP_023512022.1 WUSCHEL-related homeobox 3-like [Cucurbita pepo subsp. pepo]1.4e-4196.74Show/hide
Query:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQ
        MSP   AAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQ
Subjt:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQ

TrEMBL top hitse value%identityAlignment
A0A0A0KHT6 Homeobox domain-containing protein7.0e-3951.78Show/hide
Query:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQ--------
        MSP    ++ TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLS YGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFF+KRQ        
Subjt:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQ--------

Query:  ------------PPPAFPAAATPASNS---------------------------------------------------FSGWVKEEEGGSGNGGWGN
                     P   P   +P+S                                                      + WVKEEEG SGNGGWGN
Subjt:  ------------PPPAFPAAATPASNS---------------------------------------------------FSGWVKEEEGGSGNGGWGN

A0A1S3CK69 WUSCHEL-related homeobox 37.0e-3952.04Show/hide
Query:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQ--------
        MSP    ++ TPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLS YGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFF+KRQ        
Subjt:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQ--------

Query:  -----------PPPAFPAAATPASNS---------------------------------------------------FSGWVKEEEGGSGNGGWGN
                    P   P   +P+S                                                        WVKEEEG SGNGGWGN
Subjt:  -----------PPPAFPAAATPASNS---------------------------------------------------FSGWVKEEEGGSGNGGWGN

A0A2C9V2A3 Homeobox domain-containing protein (Fragment)1.3e-3273.47Show/hide
Query:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQPPPAFP
        MSPAA+      SRWCPTPEQ+MILEE+YR+G++TPNA+QIQ ITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKL KQLQ +  +++ Q PP  P
Subjt:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQPPPAFP

A0A6J1FXP0 putative WUSCHEL-related homeobox 21.4e-4762.5Show/hide
Query:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQP-------
        MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQ        
Subjt:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQP-------

Query:  -----------PPAFPA------------------------------AATPASNSF----------SGWVKEEEGGSGNGGWGN
                   PP  P                               A T   N            +GWVKEEEGGSGNGGWGN
Subjt:  -----------PPAFPA------------------------------AATPASNSF----------SGWVKEEEGGSGNGGWGN

A0A6P6FR94 WUSCHEL-related homeobox 3-like7.0e-3166.67Show/hide
Query:  MSPAA---AAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQ--------QHHFFI
        MSPAA   + +++T SRWCPTPEQ+MILEE+YR G +TPNA+QIQ IT+HLS YGKIEGKNVFYWFQNHKARDRQKLRRK+YKQLQ        Q+H F+
Subjt:  MSPAA---AAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQ--------QHHFFI

Query:  KRQPPPAFPAA
             P+ PAA
Subjt:  KRQPPPAFPAA

SwissProt top hitse value%identityAlignment
A2XZR3 Putative WUSCHEL-related homeobox 23.1e-2878.08Show/hide
Query:  AAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKL
        AAA  + +RWCPTPEQ+M+LEE+YR GL+TPNA QIQ IT+HLS YG+IEGKNVFYWFQNHKARDRQKLRR+L
Subjt:  AAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKL

A2ZH47 WUSCHEL-related homeobox 31.6e-2765.26Show/hide
Query:  TPS-RWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQPPPAFPAAATPA
        TPS RWCPTPEQ+MILEE+YR+G++TPNA +IQ IT+HL+ YG+IEGKNVFYWFQNHKAR+RQ+LRR+L  + QQ         PPA  AAA  A
Subjt:  TPS-RWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQPPPAFPAAATPA

Q5W7C3 Putative WUSCHEL-related homeobox 24.1e-2857.89Show/hide
Query:  AAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKL---YKQLQQHHFFIKR-------QPPP
        AAA  + +RWCPTPEQ+M+LEE+YR GL+TPNA QIQ IT+HLS YG+IEGKNVFYWFQNHKARDRQKLRR+L   +  L   H++           PPP
Subjt:  AAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKL---YKQLQQHHFFIKR-------QPPP

Query:  AFPAAATPASNSFS
               P+S+S S
Subjt:  AFPAAATPASNSFS

Q6S3I3 WUSCHEL-related homeobox 3B7.0e-2862.5Show/hide
Query:  TPS-RWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQPPPAFPAAATPAS
        TPS RWCPTPEQ+MILEE+YR+G++TPNA +IQ IT+HL+ YG+IEGKNVFYWFQNHKAR+RQ+LRR+L  + QQ +   ++Q   A PA++  +S
Subjt:  TPS-RWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQPPPAFPAAATPAS

Q9SIB4 WUSCHEL-related homeobox 32.8e-2959.82Show/hide
Query:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQL--QQHHFFIKRQ---PPP
        MSP A+      +RWCPTPEQ+MILEE+YR+G++TPNA QIQ IT+HL+ YG+IEGKNVFYWFQNHKARDRQKLR+KL KQL  QQH   ++ Q   P P
Subjt:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQL--QQHHFFIKRQ---PPP

Query:  AFPAAATPASNS
             + P + +
Subjt:  AFPAAATPASNS

Arabidopsis top hitse value%identityAlignment
AT1G46480.1 WUSCHEL related homeobox 42.2e-2168.75Show/hide
Query:  SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRR
        +RW PT EQ+ ILE +Y+ G++TPNA QI+HIT  L  YGKIEGKNVFYWFQNHKAR+RQK +R
Subjt:  SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRR

AT2G01500.1 Homeodomain-like superfamily protein1.4e-2065.22Show/hide
Query:  AATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRK
        AA   RW PTPEQ+  LEE+YR+G +TP   QIQ I S L  YG+IEGKNVFYWFQNHKAR+R K RR+
Subjt:  AATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRK

AT2G28610.1 Homeodomain-like superfamily protein2.0e-3059.82Show/hide
Query:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQL--QQHHFFIKRQ---PPP
        MSP A+      +RWCPTPEQ+MILEE+YR+G++TPNA QIQ IT+HL+ YG+IEGKNVFYWFQNHKARDRQKLR+KL KQL  QQH   ++ Q   P P
Subjt:  MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQL--QQHHFFIKRQ---PPP

Query:  AFPAAATPASNS
             + P + +
Subjt:  AFPAAATPASNS

AT3G18010.1 WUSCHEL related homeobox 11.5e-2255.43Show/hide
Query:  SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKL----------YKQLQQHHFFIKRQPP
        SRW PTP+Q+ +LEE+YR G +TP+A  IQ IT+ L  YGKIEGKNVFYWFQNHKAR+RQK RR++             L  +H F K+ PP
Subjt:  SRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKL----------YKQLQQHHFFIKRQPP

AT5G59340.1 WUSCHEL related homeobox 27.2e-2059.15Show/hide
Query:  AAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRK
        A  A+ SRW PT +Q+ +LE +Y+ G++TP+A QIQ IT  L  YG IEGKNVFYWFQNHKAR RQK +++
Subjt:  AAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCCGGCGGCGGCGGCGGCGGCGGCTACCCCATCACGGTGGTGTCCGACCCCCGAGCAAGTGATGATTTTGGAGGAGATTTATAGAAATGGGCTTAAGACTCCCAA
TGCCACTCAGATTCAGCATATTACTTCCCATCTTTCTTTGTATGGAAAGATTGAAGGCAAGAATGTGTTCTATTGGTTTCAAAACCACAAGGCTAGAGACCGCCAGAAGC
TGCGTAGGAAGCTTTATAAGCAGCTTCAGCAACATCATTTCTTCATTAAACGACAGCCACCACCAGCGTTTCCTGCCGCCGCTACTCCCGCTTCCAACTCATTTTCAGGG
TGGGTGAAGGAGGAGGAAGGCGGGAGTGGGAACGGTGGCTGGGGGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTCCGGCGGCGGCGGCGGCGGCGGCTACCCCATCACGGTGGTGTCCGACCCCCGAGCAAGTGATGATTTTGGAGGAGATTTATAGAAATGGGCTTAAGACTCCCAA
TGCCACTCAGATTCAGCATATTACTTCCCATCTTTCTTTGTATGGAAAGATTGAAGGCAAGAATGTGTTCTATTGGTTTCAAAACCACAAGGCTAGAGACCGCCAGAAGC
TGCGTAGGAAGCTTTATAAGCAGCTTCAGCAACATCATTTCTTCATTAAACGACAGCCACCACCAGCGTTTCCTGCCGCCGCTACTCCCGCTTCCAACTCATTTTCAGGG
TGGGTGAAGGAGGAGGAAGGCGGGAGTGGGAACGGTGGCTGGGGGAATTAG
Protein sequenceShow/hide protein sequence
MSPAAAAAAATPSRWCPTPEQVMILEEIYRNGLKTPNATQIQHITSHLSLYGKIEGKNVFYWFQNHKARDRQKLRRKLYKQLQQHHFFIKRQPPPAFPAAATPASNSFSG
WVKEEEGGSGNGGWGN