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CmoCh20G004880 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G004880
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionBEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein .
Genome locationCmo_Chr20:2286838..2287839
RNA-Seq ExpressionCmoCh20G004880
SyntenyCmoCh20G004880
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570746.1 Phototropin-1, partial [Cucurbita argyrosperma subsp. sororia]6.8e-7597.32Show/hide
Query:  MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG
        MQQRSSTSSSFRATTDDHCSI FSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG
Subjt:  MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG

Query:  IKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTP
        IKAVYASEFPEAPKYIDHVELAIL GAGMQIASSPLNLTSVG RDL TP
Subjt:  IKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTP

KAG7010594.1 hypothetical protein SDJN02_27388, partial [Cucurbita argyrosperma subsp. argyrosperma]9.5e-7797.37Show/hide
Query:  MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG
        MQQRSSTSSSFRATTDDHCSI FSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG
Subjt:  MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG

Query:  IKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTPGKI
        IKAVYASEFPEAPKYIDHVELAIL GAGMQIASSPLNLTSVG RDL TPGKI
Subjt:  IKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTPGKI

XP_022944431.1 uncharacterized protein LOC111448884 [Cucurbita moschata]3.7e-81100Show/hide
Query:  MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG
        MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG
Subjt:  MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG

Query:  IKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTPGKIK
        IKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTPGKIK
Subjt:  IKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTPGKIK

XP_022986953.1 uncharacterized protein LOC111484535 isoform X1 [Cucurbita maxima]2.0e-7496.64Show/hide
Query:  MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG
        MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGS LPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG
Subjt:  MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG

Query:  IKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTP
        IKAVYASEFPEAPKYIDHVELAIL  AGMQIASSPLNLTSVG RDL TP
Subjt:  IKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTP

XP_022986954.1 uncharacterized protein LOC111484535 isoform X2 [Cucurbita maxima]4.0e-7596.03Show/hide
Query:  MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG
        MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGS LPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG
Subjt:  MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG

Query:  IKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTPGK
        IKAVYASEFPEAPKYIDHVELAIL  AGMQIASSPLNLTSVG RDL TP K
Subjt:  IKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTPGK

TrEMBL top hitse value%identityAlignment
A0A5D3CTN8 Uncharacterized protein1.4e-3863.16Show/hide
Query:  MQQRSSTSSSFRATTDDHCSIIFS-PAQEPQGRCSPEIRSMDD---SSGSILPVSDP--SCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNL
        MQQR     +FR TTD+HCS++ S  ++EPQG  S    SM+D   ++G +LP+SDP  S RKRD NSRY+F   WIHLIPLILLL+LFILWWSSYP   
Subjt:  MQQRSSTSSSFRATTDDHCSIIFS-PAQEPQGRCSPEIRSMDD---SSGSILPVSDP--SCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNL

Query:  VIKDGGIKAVYASE-FPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRD
        VIKDGGI+A Y  E  PE PKY+DH ELA+L  AGM IASSPLNLTSVG RD
Subjt:  VIKDGGIKAVYASE-FPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRD

A0A6J1CX54 uncharacterized protein LOC1110153852.6e-4068Show/hide
Query:  MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDD-SSGSILPVSDP--SCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIK
        MQQRS   S FRA TDDHC II  P QEPQGR SP  RS D    G +LPVSDP    R RDH S Y+ +ERWIHLIPL L LV+FILWW SYPVNL IK
Subjt:  MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDD-SSGSILPVSDP--SCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIK

Query:  DGGIKAVYASEFPEAPK-YIDHVELAILRGAGMQIASSPLNLTSVGTRDL
        D  I  VY  EFPE PK YIDHVELA+L  AGMQIASSPLNLT  G RDL
Subjt:  DGGIKAVYASEFPEAPK-YIDHVELAILRGAGMQIASSPLNLTSVGTRDL

A0A6J1FUE4 uncharacterized protein LOC1114488841.8e-81100Show/hide
Query:  MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG
        MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG
Subjt:  MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG

Query:  IKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTPGKIK
        IKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTPGKIK
Subjt:  IKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTPGKIK

A0A6J1JHI4 uncharacterized protein LOC111484535 isoform X21.9e-7596.03Show/hide
Query:  MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG
        MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGS LPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG
Subjt:  MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG

Query:  IKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTPGK
        IKAVYASEFPEAPKYIDHVELAIL  AGMQIASSPLNLTSVG RDL TP K
Subjt:  IKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTPGK

A0A6J1JI18 uncharacterized protein LOC111484535 isoform X19.6e-7596.64Show/hide
Query:  MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG
        MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGS LPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG
Subjt:  MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGG

Query:  IKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTP
        IKAVYASEFPEAPKYIDHVELAIL  AGMQIASSPLNLTSVG RDL TP
Subjt:  IKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G07860.1 BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G07870.2)1.8e-0939Show/hide
Query:  MDDSSGSILPVSDPSCRKRDHNSR---YKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGGIKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPL
        M + S S LP+S     +R  N+R   +  SE WIH IP+I+ L  F LW  S+ V+ V+ DG I +++  E   A +   HV LAIL  + +  ASS L
Subjt:  MDDSSGSILPVSDPSCRKRDHNSR---YKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGGIKAVYASEFPEAPKYIDHVELAILRGAGMQIASSPL

AT1G07870.2 Protein kinase superfamily protein9.0e-0937.25Show/hide
Query:  RSMDDSSGSILPVSDPSCRKRDHNSR---YKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGGIKAVYASEFPEAPKYIDHVELAILRGAGMQIASS
        R  DD       V +  C  R  N+R   +  SE WIH IP+I+ L  F LW  S+ V+ V+ DG I +++  E   A +   HV LAIL  + +  ASS
Subjt:  RSMDDSSGSILPVSDPSCRKRDHNSR---YKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGGIKAVYASEFPEAPKYIDHVELAILRGAGMQIASS

Query:  PL
         L
Subjt:  PL

AT2G35658.1 unknown protein8.8e-0437.5Show/hide
Query:  SPAQEPQGRCSPEIRSMDDSSGS--ILPVSDPSCRK-RDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPV
        SP+  P     P I++  DS  S  +LP  DP+    + + SR++ +E  IH IP++L+L   ILW  S PV
Subjt:  SPAQEPQGRCSPEIRSMDDSSGS--ILPVSDPSCRK-RDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPV

AT2G35658.2 unknown protein2.3e-0434.09Show/hide
Query:  SPAQEPQGRCSPEIRSMDDSSGS--ILPVSDPSCRK-RDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGGIKAVYASE
        SP+  P     P I++  DS  S  +LP  DP+    + + SR++ +E  IH IP++L+L   ILW  S P N +   G   +V+  E
Subjt:  SPAQEPQGRCSPEIRSMDDSSGS--ILPVSDPSCRK-RDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGGIKAVYASE

AT4G16840.1 unknown protein1.1e-0643.66Show/hide
Query:  PAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRK-RDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNL
        PA       S  + +M+D    +LP  DP+ +  +   SR++FSE  IHLIPLILLL + ILW SSY   L
Subjt:  PAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRK-RDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCAGAGATCTTCGACTTCGAGTTCGTTTCGAGCAACAACTGACGATCATTGTAGCATAATCTTCAGCCCGGCACAAGAGCCACAAGGAAGATGCTCTCCAGAAAT
AAGATCAATGGACGATTCCAGCGGCAGCATTCTTCCAGTTTCCGATCCTTCGTGTCGGAAGCGAGATCACAATTCGCGATACAAATTCTCGGAGAGGTGGATTCATTTGA
TTCCTTTGATTCTGCTCCTCGTCCTCTTCATTCTCTGGTGGTCATCTTATCCAGTGAATTTGGTGATCAAGGATGGAGGAATTAAAGCAGTTTATGCAAGTGAGTTTCCG
GAGGCGCCGAAGTACATTGATCATGTCGAACTTGCCATTTTAAGAGGTGCCGGAATGCAGATTGCTTCGAGTCCTCTGAATCTAACCAGCGTTGGCACTCGAGATCTATG
GACACCGGGTAAGATCAAATGA
mRNA sequenceShow/hide mRNA sequence
AAACCCTATCTCCGTCGTTGATAAATGCAGCAGAGATCTTCGACTTCGAGTTCGTTTCGAGCAACAACTGACGATCATTGTAGCATAATCTTCAGCCCGGCACAAGAGCC
ACAAGGAAGATGCTCTCCAGAAATAAGATCAATGGACGATTCCAGCGGCAGCATTCTTCCAGTTTCCGATCCTTCGTGTCGGAAGCGAGATCACAATTCGCGATACAAAT
TCTCGGAGAGGTGGATTCATTTGATTCCTTTGATTCTGCTCCTCGTCCTCTTCATTCTCTGGTGGTCATCTTATCCAGTGAATTTGGTGATCAAGGATGGAGGAATTAAA
GCAGTTTATGCAAGTGAGTTTCCGGAGGCGCCGAAGTACATTGATCATGTCGAACTTGCCATTTTAAGAGGTGCCGGAATGCAGATTGCTTCGAGTCCTCTGAATCTAAC
CAGCGTTGGCACTCGAGATCTATGGACACCGGGTAAGATCAAATGAGAAATGAATTTTATCATTTAGAAATCCAATAATAATTTCACTGAAAATCGAGTAGCTAGGAACT
TTGTTGATAGAGATGAGGGGGTGACAACTGACGAAGCTATCCTCATATGATGCATTGGCGTCAGGTTTACTCATACAATATATACTTAGAAGAAAAGAGAATATAATAGC
AATTCAAAGAAAATATTGTTGGATCATGAAAGTCC
Protein sequenceShow/hide protein sequence
MQQRSSTSSSFRATTDDHCSIIFSPAQEPQGRCSPEIRSMDDSSGSILPVSDPSCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGGIKAVYASEFP
EAPKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTPGKIK