; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh20G005360 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G005360
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionruBisCO large subunit-binding protein subunit alpha-like
Genome locationCmo_Chr20:2609544..2610604
RNA-Seq ExpressionCmoCh20G005360
SyntenyCmoCh20G005360
Gene Ontology termsGO:0042026 - protein refolding (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsIPR002423 - Chaperonin Cpn60/TCP-1 family
IPR017998 - Chaperone tailless complex polypeptide 1 (TCP-1)
IPR027413 - GroEL-like equatorial domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570801.1 hypothetical protein SDJN03_29716, partial [Cucurbita argyrosperma subsp. sororia]3.1e-5186.86Show/hide
Query:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
        MASANAISSASILCSSQK                  SLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
Subjt:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV

Query:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
        LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
Subjt:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV

KAG7010643.1 hypothetical protein SDJN02_27438 [Cucurbita argyrosperma subsp. argyrosperma]3.1e-5186.86Show/hide
Query:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
        MASANAISSASILCSSQK                  SLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
Subjt:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV

Query:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
        LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
Subjt:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV

XP_022943380.1 ruBisCO large subunit-binding protein subunit alpha-like [Cucurbita moschata]3.1e-5186.86Show/hide
Query:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
        MASANAISSASILCSSQK                  SLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
Subjt:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV

Query:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
        LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
Subjt:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV

XP_022985565.1 ruBisCO large subunit-binding protein subunit alpha-like isoform X1 [Cucurbita maxima]3.1e-5186.86Show/hide
Query:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
        MASANAISSASILCSSQK                  SLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
Subjt:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV

Query:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
        LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
Subjt:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV

XP_022985566.1 ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like isoform X2 [Cucurbita maxima]3.1e-5186.86Show/hide
Query:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
        MASANAISSASILCSSQK                  SLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
Subjt:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV

Query:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
        LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
Subjt:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV

TrEMBL top hitse value%identityAlignment
A0A5A7SW32 RuBisCO large subunit-binding protein subunit alpha1.4e-4983.21Show/hide
Query:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
        MASANA+SSASILCSS K                  SLRK NQTQNNR+NYRQAGSRFVVRATAKEIAFDQSSR+ALQSGIDKLANAVGLTLGPRGRNVV
Subjt:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV

Query:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
        LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
Subjt:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV

A0A5D3DFR6 RuBisCO large subunit-binding protein subunit alpha1.4e-4983.21Show/hide
Query:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
        MASANA+SSASILCSS K                  SLRK NQTQNNR+NYRQAGSRFVVRATAKEIAFDQSSR+ALQSGIDKLANAVGLTLGPRGRNVV
Subjt:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV

Query:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
        LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
Subjt:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV

A0A6J1FXR2 ruBisCO large subunit-binding protein subunit alpha-like1.5e-5186.86Show/hide
Query:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
        MASANAISSASILCSSQK                  SLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
Subjt:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV

Query:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
        LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
Subjt:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV

A0A6J1J8K6 ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like isoform X21.5e-5186.86Show/hide
Query:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
        MASANAISSASILCSSQK                  SLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
Subjt:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV

Query:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
        LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
Subjt:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV

A0A6J1JBN6 ruBisCO large subunit-binding protein subunit alpha-like isoform X11.5e-5186.86Show/hide
Query:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
        MASANAISSASILCSSQK                  SLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
Subjt:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV

Query:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
        LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
Subjt:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV

SwissProt top hitse value%identityAlignment
P08823 RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment)1.2e-2985.53Show/hide
Query:  ATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
        A AKEIAFDQ SR+ALQ+G++KLANAVG+TLGPRGRNVVLDE+G+PKVVNDGVTIARAIEL +PMENAGAALIREV
Subjt:  ATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV

P08926 RuBisCO large subunit-binding protein subunit alpha, chloroplastic8.1e-3968.61Show/hide
Query:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
        MAS NA+SS SIL S                N    SL K    Q+ R+N+RQ  +RFVV+A AK+IAFDQ SRSA+Q+GIDKLA+AVGLTLGPRGRNVV
Subjt:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV

Query:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
        LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
Subjt:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV

P21238 Chaperonin 60 subunit alpha 1, chloroplastic6.9e-3866.67Show/hide
Query:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNY-RQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNV
        MASANA+SSAS+LCSS++S                  L   NQ Q  R++Y ++   RF VRA  KEIAFDQ SR+ALQ+GIDKLA+ VGLTLGPRGRNV
Subjt:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNY-RQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNV

Query:  VLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
        VLDEFGSPKVVNDGVTIARAIELP+ MENAGAALIREV
Subjt:  VLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV

P21239 RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment)3.9e-3390.12Show/hide
Query:  RFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
        RF VRA  KEI+FDQSSR+ALQ+GIDKLA+AVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPD MENAGAALIREV
Subjt:  RFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV

P34794 RuBisCO large subunit-binding protein subunit alpha, chloroplastic1.6e-3966.42Show/hide
Query:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV
        MA+ANA+SS S+LCSS++                   L   +Q +  R++YR+A  RF +RA  KEIAFDQSSR+ALQ+GIDKLA+AVGLTLGPRGRNVV
Subjt:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVV

Query:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
        LDEFGSPKVVNDGVTIARAIELPD MENAGAALIREV
Subjt:  LDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV

Arabidopsis top hitse value%identityAlignment
AT2G28000.1 chaperonin-60alpha4.9e-3966.67Show/hide
Query:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNY-RQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNV
        MASANA+SSAS+LCSS++S                  L   NQ Q  R++Y ++   RF VRA  KEIAFDQ SR+ALQ+GIDKLA+ VGLTLGPRGRNV
Subjt:  MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNY-RQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNV

Query:  VLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
        VLDEFGSPKVVNDGVTIARAIELP+ MENAGAALIREV
Subjt:  VLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV

AT3G13470.1 TCP-1/cpn60 chaperonin family protein7.3e-1944.74Show/hide
Query:  VFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAF--DQSSRSALQSGIDKLANAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIEL
        + AP    +S +   ++ +   R N     SR  +   AKE+ F  D ++   LQ+G++KLA+ VG+TLGP+GRNVVL+ ++GSP++VNDGVT+AR +EL
Subjt:  VFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAF--DQSSRSALQSGIDKLANAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIEL

Query:  PDPMENAGAALIRE
         DP+EN GA L+R+
Subjt:  PDPMENAGAALIRE

AT5G18820.1 TCP-1/cpn60 chaperonin family protein4.9e-2368.35Show/hide
Query:  VVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV
        VVRA AK I + + SR  LQ+GIDKLA+AV +TLGPRGRNVVL E  + KV+NDGVTIA++IELPD +ENAGA LI+EV
Subjt:  VVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREV

AT5G56500.1 TCP-1/cpn60 chaperonin family protein2.5e-1944.64Show/hide
Query:  APYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAF--DQSSRSALQSGIDKLANAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELPD
        AP  N +S  +  ++ +     +  Q  +RF     AK++ F  D ++   LQ+G++KLA+ VG+TLGP+GRNVVL+ ++GSP++VNDGVT+AR +EL D
Subjt:  APYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAF--DQSSRSALQSGIDKLANAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELPD

Query:  PMENAGAALIRE
        P+EN GA L+R+
Subjt:  PMENAGAALIRE

AT5G56500.2 TCP-1/cpn60 chaperonin family protein2.5e-1944.64Show/hide
Query:  APYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAF--DQSSRSALQSGIDKLANAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELPD
        AP  N +S  +  ++ +     +  Q  +RF     AK++ F  D ++   LQ+G++KLA+ VG+TLGP+GRNVVL+ ++GSP++VNDGVT+AR +EL D
Subjt:  APYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAF--DQSSRSALQSGIDKLANAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELPD

Query:  PMENAGAALIRE
        P+EN GA L+R+
Subjt:  PMENAGAALIRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCTGCTAATGCAATTTCTTCTGCATCGATTCTATGTTCTTCCCAGAAGTCGTTGCGATTCTATACTGTTGTGTTTGCGCCGTATGAGAATCATGTGAGCTACAG
TTTGAGAAAGGCGAATCAAACACAGAACAACAGGCTAAATTACAGACAGGCGGGTAGCAGATTTGTTGTGAGAGCTACTGCTAAGGAGATAGCGTTTGACCAAAGTTCTA
GGAGCGCACTTCAGTCTGGGATTGACAAGCTTGCCAATGCAGTCGGTCTGACTCTTGGACCTAGGGGGAGAAATGTGGTGCTGGATGAGTTCGGCAGTCCTAAAGTTGTA
AACGATGGTGTGACAATTGCTCGGGCAATTGAGTTGCCTGATCCCATGGAAAATGCTGGTGCAGCTCTAATTAGAGAGGTTGGTCCTCCTTTACACTCTGATCTTCCTGT
TATATTTGATCTGTTGTGA
mRNA sequenceShow/hide mRNA sequence
GAAGAAGAAGAAGAAGAAGAAGAAGAAGCTTCTGGAACTTCCAATCCCACAATAAAAACCGAACCCTAAACTCATTCAGCGCTTTGCTTACCCACCTTATCCCAACAGCT
AGCTCTACCAAAACTAAAACCCTCCGAGCTCCGCTGCCTGAAAATGGCGTCTGCTAATGCAATTTCTTCTGCATCGATTCTATGTTCTTCCCAGAAGTCGTTGCGATTCT
ATACTGTTGTGTTTGCGCCGTATGAGAATCATGTGAGCTACAGTTTGAGAAAGGCGAATCAAACACAGAACAACAGGCTAAATTACAGACAGGCGGGTAGCAGATTTGTT
GTGAGAGCTACTGCTAAGGAGATAGCGTTTGACCAAAGTTCTAGGAGCGCACTTCAGTCTGGGATTGACAAGCTTGCCAATGCAGTCGGTCTGACTCTTGGACCTAGGGG
GAGAAATGTGGTGCTGGATGAGTTCGGCAGTCCTAAAGTTGTAAACGATGGTGTGACAATTGCTCGGGCAATTGAGTTGCCTGATCCCATGGAAAATGCTGGTGCAGCTC
TAATTAGAGAGGTTGGTCCTCCTTTACACTCTGATCTTCCTGTTATATTTGATCTGTTGTGA
Protein sequenceShow/hide protein sequence
MASANAISSASILCSSQKSLRFYTVVFAPYENHVSYSLRKANQTQNNRLNYRQAGSRFVVRATAKEIAFDQSSRSALQSGIDKLANAVGLTLGPRGRNVVLDEFGSPKVV
NDGVTIARAIELPDPMENAGAALIREVGPPLHSDLPVIFDLL