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CmoCh20G005950 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G005950
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionFerroxidase
Genome locationCmo_Chr20:2932566..2935421
RNA-Seq ExpressionCmoCh20G005950
SyntenyCmoCh20G005950
Gene Ontology termsGO:0016226 - iron-sulfur cluster assembly (biological process)
GO:0065007 - biological regulation (biological process)
GO:0008199 - ferric iron binding (molecular function)
InterPro domainsIPR002908 - Frataxin/CyaY
IPR020895 - Frataxin conserved site
IPR036524 - Frataxin/CyaY superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570859.1 hypothetical protein SDJN03_29774, partial [Cucurbita argyrosperma subsp. sororia]3.8e-5188.8Show/hide
Query:  MTTKLLPRRKLSRILMLPWSSSSSSSSSSSFTSALALWIFIGDDSRGPATIDYRKTMGEIRNLEKKRKF-------EYGDNLRISGFNVDFGVMTLRLGD
        MTTKLLPRRKLSRILMLPW    SSSSSSSFTSALALWIFIGDDSRGPATIDYRKT+GEIRNLEKKRKF       EYGDNLRISGFNVDFGVMTLRLGD
Subjt:  MTTKLLPRRKLSRILMLPWSSSSSSSSSSSFTSALALWIFIGDDSRGPATIDYRKTMGEIRNLEKKRKF-------EYGDNLRISGFNVDFGVMTLRLGD

Query:  LGTYVLNKQTPNRQIWLSSPLRKEW
        LGTYVLNKQTPNRQIWLSSPLR  W
Subjt:  LGTYVLNKQTPNRQIWLSSPLRKEW

KAG6604827.1 Frataxin, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.4e-2150.65Show/hide
Query:  MTTKLLPRRKLSRILMLPWSSSSSSSSS--------------------------SSFTSALAL--WIFIGDDSRGPATIDYRKTMGE----------IRN
        M TKLLP RKLSRIL +P   SSSSSSS                           SF+ +       F+GDDSRGPATIDY   M E          I  
Subjt:  MTTKLLPRRKLSRILMLPWSSSSSSSSS--------------------------SSFTSALAL--WIFIGDDSRGPATIDYRKTMGE----------IRN

Query:  LEKKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL
        L++K + EYGD+L+I GF+VD+G  V+TLRLG LGTYVLNKQTPNRQIWLSSP+
Subjt:  LEKKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL

XP_008448200.2 PREDICTED: frataxin, mitochondrial [Cucumis melo]6.3e-2251.97Show/hide
Query:  MTTKLLPRRKLSRILMLPWSSSSS--------------------------SSSSSSFTSALALWIFIGDDSRGPATIDYRKTMGE----------IRNLE
        M TKLLP  KLSRIL LP SSS S                           S S SF S       +GDDSRGPATIDY   M E          I+ L+
Subjt:  MTTKLLPRRKLSRILMLPWSSSSS--------------------------SSSSSSFTSALALWIFIGDDSRGPATIDYRKTMGE----------IRNLE

Query:  KKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL
        +K + EYGDNL+I GF+VD+G  V+TLRLG+LGTYVLNKQTPNRQIWLSSPL
Subjt:  KKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL

XP_022971111.1 frataxin, mitochondrial [Cucurbita maxima]1.3e-2251.3Show/hide
Query:  MTTKLLPRRKLSRILMLPWSSSSSSSSS--------------------------SSFTSALAL--WIFIGDDSRGPATIDYRKTMGE----------IRN
        M TKLLP RKLSRIL +P   SSSSSSS                           SF+ +       F+GDDSRGPATIDY   M E          I  
Subjt:  MTTKLLPRRKLSRILMLPWSSSSSSSSS--------------------------SSFTSALAL--WIFIGDDSRGPATIDYRKTMGE----------IRN

Query:  LEKKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL
        L++K + EYGD+L+I GF+VD+G  V+TLRLGDLGTYVLNKQTPNRQIWLSSP+
Subjt:  LEKKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL

XP_023533562.1 frataxin, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo]4.8e-2250.98Show/hide
Query:  MTTKLLPRRKLSRILMLPWSSSSSSSSS--------------------------SSFTSALAL--WIFIGDDSRGPATIDYRKTMGE----------IRN
        M TKLLP RKLSRIL +P   SSSSSSS                           SF+ +       F+GDDSRGPATIDY   M E          I  
Subjt:  MTTKLLPRRKLSRILMLPWSSSSSSSSS--------------------------SSFTSALAL--WIFIGDDSRGPATIDYRKTMGE----------IRN

Query:  LEKKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSP
        L++K + E+GD+L+I GF+VD+G  V+TLRLGDLGTYVLNKQTPNRQIWLSSP
Subjt:  LEKKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSP

TrEMBL top hitse value%identityAlignment
A0A0A0KAC6 Ferroxidase5.8e-2150.34Show/hide
Query:  KLLPRRKLSRILMLPWSSSSSSSSSSSFTSALALWI------------------------FIGDDSRGPATIDYRKTMGE----------IRNLEKKRKF
        KLLP RKLSRIL LP  SS S         A +  I                         +GDDSRGPATIDY   M E          I+ L++K + 
Subjt:  KLLPRRKLSRILMLPWSSSSSSSSSSSFTSALALWI------------------------FIGDDSRGPATIDYRKTMGE----------IRNLEKKRKF

Query:  EYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL
        EYGDNL+I GF+VD+G  V+TLRLG+LGTYVLNKQTPNRQIWLSSPL
Subjt:  EYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL

A0A1S3BJ48 Ferroxidase3.0e-2251.97Show/hide
Query:  MTTKLLPRRKLSRILMLPWSSSSS--------------------------SSSSSSFTSALALWIFIGDDSRGPATIDYRKTMGE----------IRNLE
        M TKLLP  KLSRIL LP SSS S                           S S SF S       +GDDSRGPATIDY   M E          I+ L+
Subjt:  MTTKLLPRRKLSRILMLPWSSSSS--------------------------SSSSSSFTSALALWIFIGDDSRGPATIDYRKTMGE----------IRNLE

Query:  KKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL
        +K + EYGDNL+I GF+VD+G  V+TLRLG+LGTYVLNKQTPNRQIWLSSPL
Subjt:  KKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL

A0A6J1CG34 Ferroxidase4.4e-2149.68Show/hide
Query:  MTTKLLPRRKLSRILMLPWSSSSSS-----------------------------SSSSSFTSALALWIFIGDDSRGPATIDYRKTMGE----------IR
        M TKLLP RKLSRIL +P SSS SS                             S S SF S      F+ DDSRGPA+IDY   M E          I 
Subjt:  MTTKLLPRRKLSRILMLPWSSSSSS-----------------------------SSSSSFTSALALWIFIGDDSRGPATIDYRKTMGE----------IR

Query:  NLEKKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL
         L++K + EYGD+L+I GF+VD+G  V+TL+LGDLGTYVLNKQTPNRQIWLSSP+
Subjt:  NLEKKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL

A0A6J1G6C8 Ferroxidase6.8e-2250.65Show/hide
Query:  MTTKLLPRRKLSRILMLPWSSSSSSSSS--------------------------SSFTSALAL--WIFIGDDSRGPATIDYRKTMGE----------IRN
        M TKLLP RKLSRIL +P   SSSSSSS                           SF+ +       F+GDDSRGPATIDY   M E          I  
Subjt:  MTTKLLPRRKLSRILMLPWSSSSSSSSS--------------------------SSFTSALAL--WIFIGDDSRGPATIDYRKTMGE----------IRN

Query:  LEKKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL
        L++K + EYGD+L+I GF+VD+G  V+TLRLG LGTYVLNKQTPNRQIWLSSP+
Subjt:  LEKKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL

A0A6J1I2E7 Ferroxidase6.1e-2351.3Show/hide
Query:  MTTKLLPRRKLSRILMLPWSSSSSSSSS--------------------------SSFTSALAL--WIFIGDDSRGPATIDYRKTMGE----------IRN
        M TKLLP RKLSRIL +P   SSSSSSS                           SF+ +       F+GDDSRGPATIDY   M E          I  
Subjt:  MTTKLLPRRKLSRILMLPWSSSSSSSSS--------------------------SSFTSALAL--WIFIGDDSRGPATIDYRKTMGE----------IRN

Query:  LEKKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL
        L++K + EYGD+L+I GF+VD+G  V+TLRLGDLGTYVLNKQTPNRQIWLSSP+
Subjt:  LEKKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL

SwissProt top hitse value%identityAlignment
O35943 Frataxin, mitochondrial3.5e-0765Show/hide
Query:  ISGFNVDF--GVMTLRL-GDLGTYVLNKQTPNRQIWLSSP
        +  ++V F  GV+T++L GDLGTYV+NKQTPN+QIWLSSP
Subjt:  ISGFNVDF--GVMTLRL-GDLGTYVLNKQTPNRQIWLSSP

Q05B87 Frataxin, mitochondrial7.8e-0770.27Show/hide
Query:  FNVDF--GVMTLRL-GDLGTYVLNKQTPNRQIWLSSP
        ++V F  GV+T++L GDLGTYV+NKQTPN+QIWLSSP
Subjt:  FNVDF--GVMTLRL-GDLGTYVLNKQTPNRQIWLSSP

Q16595 Frataxin, mitochondrial7.8e-0770.27Show/hide
Query:  FNVDF--GVMTLRL-GDLGTYVLNKQTPNRQIWLSSP
        ++V F  GV+T++L GDLGTYV+NKQTPN+QIWLSSP
Subjt:  FNVDF--GVMTLRL-GDLGTYVLNKQTPNRQIWLSSP

Q54C45 Frataxin, mitochondrial5.9e-0741.77Show/hide
Query:  GFNVD--FGVMTLRLGDLGTYVLNKQTPNRQIWLSSPL-----------RKEWMRLLDFGPERKKTSNIVVGYLCTKTM
        GF V+   GV+T+ +G+ GTYV+NKQTPNRQIW SSPL            K W+   D G   ++  N  +  LC   M
Subjt:  GFNVD--FGVMTLRLGDLGTYVLNKQTPNRQIWLSSPL-----------RKEWMRLLDFGPERKKTSNIVVGYLCTKTM

Q9ZR07 Frataxin, mitochondrial3.1e-1650Show/hide
Query:  SRGPATIDYRKTMGE----------IRNLEKKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL----RKEWMR
        S+GPA++DY   + E          I +L +K + +YGDN++I GF++D+G  V+TL+LG LGTYVLNKQTPNRQIW+SSP+    R +W R
Subjt:  SRGPATIDYRKTMGE----------IRNLEKKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL----RKEWMR

Arabidopsis top hitse value%identityAlignment
AT4G03240.1 frataxin homolog2.2e-1750Show/hide
Query:  SRGPATIDYRKTMGE----------IRNLEKKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL----RKEWMR
        S+GPA++DY   + E          I +L +K + +YGDN++I GF++D+G  V+TL+LG LGTYVLNKQTPNRQIW+SSP+    R +W R
Subjt:  SRGPATIDYRKTMGE----------IRNLEKKRKFEYGDNLRISGFNVDFG--VMTLRLGDLGTYVLNKQTPNRQIWLSSPL----RKEWMR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACCAAGCTGCTTCCCCGGCGTAAGCTTTCAAGGATACTAATGTTGCCGTGGTCGTCTTCGTCTTCGTCTTCGTCTTCTTCCTCTTTCACTTCTGCTCTTGCCCT
CTGGATTTTCATCGGCGATGATTCTCGAGGCCCTGCCACCATTGATTATAGAAAAACTATGGGCGAGATTCGAAATCTTGAAAAGAAACGGAAGTTCGAATATGGTGATA
ATCTCCGAATTAGTGGCTTTAACGTGGACTTTGGGGTAATGACCTTAAGGCTTGGGGATCTTGGCACTTACGTCTTGAACAAACAAACGCCAAACAGACAAATTTGGCTA
TCTTCCCCTTTGAGAAAAGAATGGATGAGACTACTTGATTTTGGTCCTGAGAGAAAGAAAACCTCAAACATAGTGGTTGGTTATTTATGTACTAAGACGATGTAG
mRNA sequenceShow/hide mRNA sequence
TGTAACGATGACTACCAAGCTGCTTCCCCGGCGTAAGCTTTCAAGGATACTAATGTTGCCGTGGTCGTCTTCGTCTTCGTCTTCGTCTTCTTCCTCTTTCACTTCTGCTC
TTGCCCTCTGGATTTTCATCGGCGATGATTCTCGAGGCCCTGCCACCATTGATTATAGAAAAACTATGGGCGAGATTCGAAATCTTGAAAAGAAACGGAAGTTCGAATAT
GGTGATAATCTCCGAATTAGTGGCTTTAACGTGGACTTTGGGGTAATGACCTTAAGGCTTGGGGATCTTGGCACTTACGTCTTGAACAAACAAACGCCAAACAGACAAAT
TTGGCTATCTTCCCCTTTGAGAAAAGAATGGATGAGACTACTTGATTTTGGTCCTGAGAGAAAGAAAACCTCAAACATAGTGGTTGGTTATTTATGTACTAAGACGATGT
AG
Protein sequenceShow/hide protein sequence
MTTKLLPRRKLSRILMLPWSSSSSSSSSSSFTSALALWIFIGDDSRGPATIDYRKTMGEIRNLEKKRKFEYGDNLRISGFNVDFGVMTLRLGDLGTYVLNKQTPNRQIWL
SSPLRKEWMRLLDFGPERKKTSNIVVGYLCTKTM