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CmoCh20G006050 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G006050
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionProtein of unknown function (DUF1218)
Genome locationCmo_Chr20:2969154..2970536
RNA-Seq ExpressionCmoCh20G006050
SyntenyCmoCh20G006050
Gene Ontology termsGO:0009855 - determination of bilateral symmetry (biological process)
GO:0010087 - phloem or xylem histogenesis (biological process)
GO:0010305 - leaf vascular tissue pattern formation (biological process)
GO:0010588 - cotyledon vascular tissue pattern formation (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009606 - Modifying wall lignin-1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570866.1 hypothetical protein SDJN03_29781, partial [Cucurbita argyrosperma subsp. sororia]5.6e-8098.73Show/hide
Query:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT
        MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQIS+ACLVFT
Subjt:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT

Query:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAVAMS+LVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
Subjt:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

XP_008455827.1 PREDICTED: uncharacterized protein LOC103495927 [Cucumis melo]1.4e-7591.77Show/hide
Query:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT
        MKLVGVL+CLLVVAMDIVAGLLGIEADIAQNKVK+LRLWIFECRDPS QA++LGL AAG+LGLAH+IANLLGGCNCICSQ+ LEKSPPN+QISIACLVFT
Subjt:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT

Query:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAV MSMLVIGA+GNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
Subjt:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

XP_022944616.1 uncharacterized protein LOC111449022 [Cucurbita moschata]1.5e-80100Show/hide
Query:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT
        MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT
Subjt:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT

Query:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
Subjt:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

XP_022986396.1 uncharacterized protein LOC111484145 [Cucurbita maxima]1.0e-7898.73Show/hide
Query:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT
        MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT
Subjt:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT

Query:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHG F VAYYVTATAAE
Subjt:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

XP_023512382.1 uncharacterized protein LOC111777151 [Cucurbita pepo subsp. pepo]1.9e-8099.37Show/hide
Query:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT
        MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQIS+ACLVFT
Subjt:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT

Query:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
Subjt:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

TrEMBL top hitse value%identityAlignment
A0A0A0LR43 Uncharacterized protein9.0e-7691.14Show/hide
Query:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT
        MKLVGVL+CLLVVAMDIVAGLLGIEADIAQNKVK+LRLWIFECRDPS QA++LGL AAG+LGLAH+IANLLGGCNCICSQ+ LEKSPPN+QISIACL+FT
Subjt:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT

Query:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAV MSMLVIGA+GNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
Subjt:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

A0A1S3C1S7 uncharacterized protein LOC1034959276.9e-7691.77Show/hide
Query:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT
        MKLVGVL+CLLVVAMDIVAGLLGIEADIAQNKVK+LRLWIFECRDPS QA++LGL AAG+LGLAH+IANLLGGCNCICSQ+ LEKSPPN+QISIACLVFT
Subjt:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT

Query:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAV MSMLVIGA+GNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
Subjt:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

A0A6J1CID0 uncharacterized protein LOC111011214 isoform X26.6e-7184.81Show/hide
Query:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT
        MK+VGVL+CLLVVAMDIVAGLLGIEA+IAQNKVK LRLWIFECR+PS QA++LGL AAG+LGLAH+IANLLGGCNCICSQE ++KSPPN+Q+S+ACL+FT
Subjt:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT

Query:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAV MSMLVIG L NNKSRASCGFTHHHFLSIGGILCFVH LFCVAYYV+ATA E
Subjt:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

A0A6J1FUW3 uncharacterized protein LOC1114490227.1e-81100Show/hide
Query:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT
        MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT
Subjt:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT

Query:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
Subjt:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

A0A6J1JAZ6 uncharacterized protein LOC1114841455.1e-7998.73Show/hide
Query:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT
        MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT
Subjt:  MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFT

Query:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHG F VAYYVTATAAE
Subjt:  WIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G05291.1 Protein of unknown function (DUF1218)1.4e-2038.46Show/hide
Query:  VLVCL-LVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNK---QISIACLVFTW
        ++VC+ L V +DIVAG +G++A  AQ  VK+ +L   EC+ PS  A+ LG+ A   L  AHV AN++ GC+     +AL   P NK     ++ACL   W
Subjt:  VLVCL-LVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNK---QISIACLVFTW

Query:  IILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAA
        ++      +L  G   N +SR  C FT++H  SIGG +CF+H +    YY+++  A
Subjt:  IILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAA

AT1G11500.1 Protein of unknown function (DUF1218)1.2e-2440.74Show/hide
Query:  VGVLVCLLVVAMDIVAGLLGIEADIAQNKV------KNLRLWIFEC-RDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIAC
        +G LV ++++  DI A +LGIEA+IAQ+K       ++ R     C R PS  A+  G+AA  +L + HV+AN+LGGC  I S++  +++  NK +++A 
Subjt:  VGVLVCLLVVAMDIVAGLLGIEADIAQNKV------KNLRLWIFEC-RDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIAC

Query:  LVFTWIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        LV +WI   V+ S L+IG L N+++   C   H  F  IGGI C  HG+   AYYV+A AA+
Subjt:  LVFTWIILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

AT2G32280.1 Protein of unknown function (DUF1218)1.1e-5763.06Show/hide
Query:  KLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFTW
        K+ G+LVCL++V +D+ A +LGI+A++AQN+VK++RLW+FECR+PS  A+RLGL AA +L +AHV+ NL+GGC CICSQ+  ++S   +QIS+ACLV TW
Subjt:  KLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFTW

Query:  IILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        I+ AV    +VIG + N+KSR+SCGFTHHHFLSIGGILCF+H LFCVAYYV+ATAA+
Subjt:  IILAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

AT4G21310.1 Protein of unknown function (DUF1218)1.5e-5463.64Show/hide
Query:  VGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFTWII
        VG  +C+L++AMD+ AG+LGIEA+IAQNKVK+L++WIFECRDPS  A++ GLAA  +L LAHV AN LGGC C+ S++ LEKS  NKQ+++A L+FTWII
Subjt:  VGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFTWII

Query:  LAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAA
        LA+A SML++G + N++SR +CG +HH  LSIGGILCFVHGLF VAYY++ATA+
Subjt:  LAVAMSMLVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTTGGTTGGCGTGTTGGTATGTTTGTTGGTGGTGGCCATGGACATCGTGGCCGGCCTACTTGGCATCGAAGCTGATATTGCACAAAACAAGGTGAAGAACCTCCG
GTTATGGATATTCGAGTGCAGAGACCCAAGCGCGCAAGCTTACAGATTGGGATTAGCAGCAGCCGGGGTTTTGGGATTAGCCCACGTAATCGCCAACCTGCTCGGCGGCT
GTAACTGCATTTGCTCGCAAGAAGCGCTCGAAAAATCACCCCCAAACAAGCAAATCTCCATCGCCTGCCTCGTTTTCACTTGGATAATTCTAGCGGTGGCGATGTCGATG
TTGGTGATCGGAGCATTGGGGAACAACAAATCCCGAGCATCCTGTGGCTTCACACACCATCACTTCCTGTCGATTGGAGGGATTTTGTGCTTCGTTCATGGCTTGTTTTG
TGTCGCTTATTACGTTACTGCCACTGCTGCTGAGTAG
mRNA sequenceShow/hide mRNA sequence
AACACCACCAAACTTAAAAGCTTTGTAGTGTGTGGGTAAAGAAGCATTTTTTAGCTCAAAAAATGCATGCTTTTTGAAGCCCATAAATACTTCATTTCCCCTGTGCTGTC
TAATACAAAGAAGAGAAGGATATGAAGTTGGTTGGCGTGTTGGTATGTTTGTTGGTGGTGGCCATGGACATCGTGGCCGGCCTACTTGGCATCGAAGCTGATATTGCACA
AAACAAGGTGAAGAACCTCCGGTTATGGATATTCGAGTGCAGAGACCCAAGCGCGCAAGCTTACAGATTGGGATTAGCAGCAGCCGGGGTTTTGGGATTAGCCCACGTAA
TCGCCAACCTGCTCGGCGGCTGTAACTGCATTTGCTCGCAAGAAGCGCTCGAAAAATCACCCCCAAACAAGCAAATCTCCATCGCCTGCCTCGTTTTCACTTGGATAATT
CTAGCGGTGGCGATGTCGATGTTGGTGATCGGAGCATTGGGGAACAACAAATCCCGAGCATCCTGTGGCTTCACACACCATCACTTCCTGTCGATTGGAGGGATTTTGTG
CTTCGTTCATGGCTTGTTTTGTGTCGCTTATTACGTTACTGCCACTGCTGCTGAGTAGTGGAAGTTGCTTTTGGATTTGATGTCTCATTTCTCCTCTTGTGAGGCATATC
AGACAAAAACTAATGTAATCATTTCTTTTCTTCTCTGTTAAGCATTGCCCCTATTCTCAAAACTTTAAATATAAAGGACCCACCAAACTCCCG
Protein sequenceShow/hide protein sequence
MKLVGVLVCLLVVAMDIVAGLLGIEADIAQNKVKNLRLWIFECRDPSAQAYRLGLAAAGVLGLAHVIANLLGGCNCICSQEALEKSPPNKQISIACLVFTWIILAVAMSM
LVIGALGNNKSRASCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE