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CmoCh20G006090 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G006090
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionB box-type domain-containing protein
Genome locationCmo_Chr20:2982202..2982594
RNA-Seq ExpressionCmoCh20G006090
SyntenyCmoCh20G006090
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000315 - B-box-type zinc finger


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042428.1 Zinc finger protein CONSTANS-LIKE 14 [Cucumis melo var. makuwa]6.0e-4870.92Show/hide
Query:  MCRGVVE-----------QRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMG
        MCRGV E              RGGCR+  V +KG  SA G V+MCELC+S+ASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLT KYLMG
Subjt:  MCRGVVE-----------QRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMG

Query:  TSTQVLLPTIVTCNQPPNDCNDNRNLSTCCSVRLKTPVLFL
        TST+VLLPTI+ C +  NDCN+N NL+TCCSV LK P LFL
Subjt:  TSTQVLLPTIVTCNQPPNDCNDNRNLSTCCSVRLKTPVLFL

KAG6570870.1 B-box domain protein 31, partial [Cucurbita argyrosperma subsp. sororia]9.6e-7097.69Show/hide
Query:  MCRGVVEQRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIV
        MCRGVVEQRS GGCREFS AEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILC+VCQNLTHKYLMGTSTQVLLPTIV
Subjt:  MCRGVVEQRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIV

Query:  TCNQPPNDCNDNRNLSTCCSVRLKTPVLFL
        TCNQPPNDCNDNRNLSTCCSVRLKTPVLFL
Subjt:  TCNQPPNDCNDNRNLSTCCSVRLKTPVLFL

TYK13446.1 Zinc finger protein CONSTANS-LIKE 14 [Cucumis melo var. makuwa]6.0e-4870.92Show/hide
Query:  MCRGVVE-----------QRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMG
        MCRGV E              RGGCR+  V +KG  SA G V+MCELC+S+ASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLT KYLMG
Subjt:  MCRGVVE-----------QRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMG

Query:  TSTQVLLPTIVTCNQPPNDCNDNRNLSTCCSVRLKTPVLFL
        TST+VLLPTI+ C +  NDCN+N NL+TCCSV LK P LFL
Subjt:  TSTQVLLPTIVTCNQPPNDCNDNRNLSTCCSVRLKTPVLFL

XP_022986418.1 B-box domain protein 30-like [Cucurbita maxima]5.8e-6793.85Show/hide
Query:  MCRGVVEQRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIV
        MCRGVVEQRS GGCR+FS AEKGGDSAEGAVVMCELC+SRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILC VCQNLTHKYLMGTSTQVLLPTIV
Subjt:  MCRGVVEQRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIV

Query:  TCNQPPNDCNDNRNLSTCCSVRLKTPVLFL
        TC+QPPNDCN NRNL+TCCSVRLKTPVLFL
Subjt:  TCNQPPNDCNDNRNLSTCCSVRLKTPVLFL

XP_023512381.1 B-box domain protein 31-like [Cucurbita pepo subsp. pepo]1.1e-6896.15Show/hide
Query:  MCRGVVEQRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIV
        MCRGVVEQRS GGCREFS AEKGGDSAEGAV+MCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILC+VCQ LTHKYLMGTSTQVLLPTIV
Subjt:  MCRGVVEQRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIV

Query:  TCNQPPNDCNDNRNLSTCCSVRLKTPVLFL
        TCNQPPNDCNDNRNLSTCCSVRLKTPVLFL
Subjt:  TCNQPPNDCNDNRNLSTCCSVRLKTPVLFL

TrEMBL top hitse value%identityAlignment
A0A0A0LTB0 B box-type domain-containing protein8.0e-4671.11Show/hide
Query:  MCRGVVE-----QRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVL
        MCRGV E        R GCR+  V +KG  SA G VVMCELC+S+ASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILC+VCQNLT KYLMGTST+VL
Subjt:  MCRGVVE-----QRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVL

Query:  LPTIVTCNQPPNDCNDNRNLSTCCSVRLKTPVLFL
        LPTI+ C +  NDCN+N N + CCSV  K P LFL
Subjt:  LPTIVTCNQPPNDCNDNRNLSTCCSVRLKTPVLFL

A0A2C9UPR0 B box-type domain-containing protein8.2e-3557.58Show/hide
Query:  MCRGVVEQRSRGG--CREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPT
        MCRGV E+    G  CR+    E G  +   ++V CELC S+ASLYCQAD+A+LCRKCDKWVHGANFLA RHIRC LC+ CQNLT +YL+G ST+++LPT
Subjt:  MCRGVVEQRSRGG--CREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPT

Query:  IVTCNQPPNDCNDNRNLSTCCSVRLKTPVLFL
        IV+  +    CN N N    CS  LK P LFL
Subjt:  IVTCNQPPNDCNDNRNLSTCCSVRLKTPVLFL

A0A5A7TI11 Zinc finger protein CONSTANS-LIKE 142.9e-4870.92Show/hide
Query:  MCRGVVE-----------QRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMG
        MCRGV E              RGGCR+  V +KG  SA G V+MCELC+S+ASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLT KYLMG
Subjt:  MCRGVVE-----------QRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMG

Query:  TSTQVLLPTIVTCNQPPNDCNDNRNLSTCCSVRLKTPVLFL
        TST+VLLPTI+ C +  NDCN+N NL+TCCSV LK P LFL
Subjt:  TSTQVLLPTIVTCNQPPNDCNDNRNLSTCCSVRLKTPVLFL

A0A5D3CSP7 Zinc finger protein CONSTANS-LIKE 142.9e-4870.92Show/hide
Query:  MCRGVVE-----------QRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMG
        MCRGV E              RGGCR+  V +KG  SA G V+MCELC+S+ASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLT KYLMG
Subjt:  MCRGVVE-----------QRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMG

Query:  TSTQVLLPTIVTCNQPPNDCNDNRNLSTCCSVRLKTPVLFL
        TST+VLLPTI+ C +  NDCN+N NL+TCCSV LK P LFL
Subjt:  TSTQVLLPTIVTCNQPPNDCNDNRNLSTCCSVRLKTPVLFL

A0A6J1JGF8 B-box domain protein 30-like2.8e-6793.85Show/hide
Query:  MCRGVVEQRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIV
        MCRGVVEQRS GGCR+FS AEKGGDSAEGAVVMCELC+SRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILC VCQNLTHKYLMGTSTQVLLPTIV
Subjt:  MCRGVVEQRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIV

Query:  TCNQPPNDCNDNRNLSTCCSVRLKTPVLFL
        TC+QPPNDCN NRNL+TCCSVRLKTPVLFL
Subjt:  TCNQPPNDCNDNRNLSTCCSVRLKTPVLFL

SwissProt top hitse value%identityAlignment
O22800 Zinc finger protein CONSTANS-LIKE 143.7e-0849.12Show/hide
Query:  GDSAEGAVVMCELCDSR-ASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVC
        G S   +VV CE C  R A L+C+AD A LC  CD+ VH AN L+ +H+R  +CD C
Subjt:  GDSAEGAVVMCELCDSR-ASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVC

O82256 Zinc finger protein CONSTANS-LIKE 132.8e-0845.31Show/hide
Query:  MCELCDSRASL-YCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVL
        +C+ CDS  +L YC+AD A LC  CDK VH AN L  +H R +LCD C          T   VL
Subjt:  MCELCDSRASL-YCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVL

Q1G3I2 B-box domain protein 301.9e-2045.63Show/hide
Query:  MCRGVVEQRSR----GGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLL
        MCRG  ++  R    GGC+           +  A V CELC   A++YC+AD A+LCRKCD+WVH ANFLA RH+R ++C  C+ LT + L+G +  V+L
Subjt:  MCRGVVEQRSR----GGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLL

Query:  PTI
        P I
Subjt:  PTI

Q9LJB7 B-box zinc finger protein 321.1e-1241.11Show/hide
Query:  VVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDCNDNRNLSTCCS
        V  CELC + A L+C AD A+LCR CD   H +NFL  RH R ++C  C++LT  ++ G     LLP       P   C    + S+CCS
Subjt:  VVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDCNDNRNLSTCCS

Q9LRM4 B-box domain protein 315.9e-2247.71Show/hide
Query:  MCRGVVEQRSR----GGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGT-STQVL
        MCRG+  + SR    GGCR          +     V CELCD  AS++C+AD A+LCRKCD+WVHGANFLA RH+R +LC  CQ LT + L+G     V+
Subjt:  MCRGVVEQRSR----GGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGT-STQVL

Query:  LPTIVTCNQ
        LP++ T  +
Subjt:  LPTIVTCNQ

Arabidopsis top hitse value%identityAlignment
AT3G21150.1 B-box 327.9e-1441.11Show/hide
Query:  VVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDCNDNRNLSTCCS
        V  CELC + A L+C AD A+LCR CD   H +NFL  RH R ++C  C++LT  ++ G     LLP       P   C    + S+CCS
Subjt:  VVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDCNDNRNLSTCCS

AT3G21890.1 B-box type zinc finger family protein4.2e-2347.71Show/hide
Query:  MCRGVVEQRSR----GGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGT-STQVL
        MCRG+  + SR    GGCR          +     V CELCD  AS++C+AD A+LCRKCD+WVHGANFLA RH+R +LC  CQ LT + L+G     V+
Subjt:  MCRGVVEQRSR----GGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGT-STQVL

Query:  LPTIVTCNQ
        LP++ T  +
Subjt:  LPTIVTCNQ

AT4G15248.1 B-box type zinc finger family protein1.4e-2145.63Show/hide
Query:  MCRGVVEQRSR----GGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLL
        MCRG  ++  R    GGC+           +  A V CELC   A++YC+AD A+LCRKCD+WVH ANFLA RH+R ++C  C+ LT + L+G +  V+L
Subjt:  MCRGVVEQRSR----GGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLL

Query:  PTI
        P I
Subjt:  PTI

AT4G27310.1 B-box type zinc finger family protein1.5e-1256Show/hide
Query:  CELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLT
        C+LC+  A +YC++D A LC  CD  VHGANFL  +H RC+LC  CQ+LT
Subjt:  CELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLT

AT5G54470.1 B-box type zinc finger family protein2.0e-1247.83Show/hide
Query:  CELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIVTC
        CELC   A +YC++D A LC  CD  VHGANFL  +H+RC+LC  CQ+ T     G +   L PT+  C
Subjt:  CELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIVTC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAGAGGGGTGGTGGAACAGAGGAGCCGCGGTGGTTGCCGGGAGTTTTCGGTGGCTGAGAAGGGTGGTGATTCGGCGGAGGGTGCGGTGGTGATGTGCGAGCTCTG
TGACTCGAGGGCTTCATTGTACTGCCAAGCGGATGATGCTTATTTATGTAGGAAATGTGACAAGTGGGTTCATGGTGCTAATTTCTTAGCTCTCAGGCATATTAGGTGCA
TTCTCTGCGATGTTTGCCAAAACCTTACCCATAAATACCTCATGGGAACCTCTACTCAGGTCCTTCTCCCCACCATCGTCACCTGCAACCAACCTCCTAATGACTGCAAC
GACAATCGCAATCTTAGCACATGTTGTTCTGTAAGGCTCAAAACGCCTGTTCTCTTTTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGCAGAGGGGTGGTGGAACAGAGGAGCCGCGGTGGTTGCCGGGAGTTTTCGGTGGCTGAGAAGGGTGGTGATTCGGCGGAGGGTGCGGTGGTGATGTGCGAGCTCTG
TGACTCGAGGGCTTCATTGTACTGCCAAGCGGATGATGCTTATTTATGTAGGAAATGTGACAAGTGGGTTCATGGTGCTAATTTCTTAGCTCTCAGGCATATTAGGTGCA
TTCTCTGCGATGTTTGCCAAAACCTTACCCATAAATACCTCATGGGAACCTCTACTCAGGTCCTTCTCCCCACCATCGTCACCTGCAACCAACCTCCTAATGACTGCAAC
GACAATCGCAATCTTAGCACATGTTGTTCTGTAAGGCTCAAAACGCCTGTTCTCTTTTTGTGA
Protein sequenceShow/hide protein sequence
MCRGVVEQRSRGGCREFSVAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWVHGANFLALRHIRCILCDVCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDCN
DNRNLSTCCSVRLKTPVLFL