; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh20G006600 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G006600
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionNuclear cap-binding protein subunit 2
Genome locationCmo_Chr20:3227326..3232008
RNA-Seq ExpressionCmoCh20G006600
SyntenyCmoCh20G006600
Gene Ontology termsGO:0045292 - mRNA cis splicing, via spliceosome (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005846 - nuclear cap binding complex (cellular component)
GO:0000339 - RNA cap binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR027157 - Nuclear cap-binding protein subunit 2
IPR034148 - NCBP2, RNA recognition motif
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570919.1 Nuclear cap-binding protein subunit 2, partial [Cucurbita argyrosperma subsp. sororia]6.0e-13798.8Show/hide
Query:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL
        MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL
Subjt:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL

Query:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD
        DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGS+PSV+PQYGKHGGSHGNGPRHGRDYHNRKRYRD
Subjt:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD

Query:  DDRHAHESSKRTSDYDSRRNPDHESRP-KNPRFRESGDSDEEDDDDRKQRH
        DDRHAHESSKRTSDYDSRRNPDHESRP KNPRFRESGDSDEEDDDDRKQRH
Subjt:  DDRHAHESSKRTSDYDSRRNPDHESRP-KNPRFRESGDSDEEDDDDRKQRH

XP_022943536.1 nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita moschata]2.1e-13799.6Show/hide
Query:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL
        MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL
Subjt:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL

Query:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD
        DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD
Subjt:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD

Query:  DDRHAHESSKRTSDYDSRRNPDHESRP-KNPRFRESGDSDEEDDDDRKQRH
        DDRHAHESSKRTSDYDSRRNPDHESRP KNPRFRESGDSDEEDDDDRKQRH
Subjt:  DDRHAHESSKRTSDYDSRRNPDHESRP-KNPRFRESGDSDEEDDDDRKQRH

XP_022943539.1 nuclear cap-binding protein subunit 2-like isoform X2 [Cucurbita moschata]8.4e-139100Show/hide
Query:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL
        MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL
Subjt:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL

Query:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD
        DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD
Subjt:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD

Query:  DDRHAHESSKRTSDYDSRRNPDHESRPKNPRFRESGDSDEEDDDDRKQRH
        DDRHAHESSKRTSDYDSRRNPDHESRPKNPRFRESGDSDEEDDDDRKQRH
Subjt:  DDRHAHESSKRTSDYDSRRNPDHESRPKNPRFRESGDSDEEDDDDRKQRH

XP_022986365.1 nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita maxima]1.5e-13598.41Show/hide
Query:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL
        MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCF LYYSREDTEDAVKYISGTIL
Subjt:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL

Query:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD
        DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGS+PSVIPQYGKHGGSHGNG RHGRDYHNRKRYRD
Subjt:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD

Query:  DDRHAHESSKRTSDYDSRRNPDHESRP-KNPRFRESGDSDEEDDDDRKQRH
        DDRHAHESSKRTSDYDSRRNPDHESRP KNPRFRESGDSDEEDDDDRKQRH
Subjt:  DDRHAHESSKRTSDYDSRRNPDHESRP-KNPRFRESGDSDEEDDDDRKQRH

XP_022986368.1 nuclear cap-binding protein subunit 2-like isoform X2 [Cucurbita maxima]6.0e-13798.8Show/hide
Query:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL
        MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCF LYYSREDTEDAVKYISGTIL
Subjt:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL

Query:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD
        DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGS+PSVIPQYGKHGGSHGNG RHGRDYHNRKRYRD
Subjt:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD

Query:  DDRHAHESSKRTSDYDSRRNPDHESRPKNPRFRESGDSDEEDDDDRKQRH
        DDRHAHESSKRTSDYDSRRNPDHESRPKNPRFRESGDSDEEDDDDRKQRH
Subjt:  DDRHAHESSKRTSDYDSRRNPDHESRPKNPRFRESGDSDEEDDDDRKQRH

TrEMBL top hitse value%identityAlignment
A0A6J1CIF4 Nuclear cap-binding protein subunit 23.2e-12894Show/hide
Query:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL
        MASLFKDP+KLSVYRDRRFQGTQDEFE+ALQTS TVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKN+KTPCGFCFVLYYSRED EDAVKY+SGTIL
Subjt:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL

Query:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD
        DDRPIR DFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVP VIPQYGKHGG HG+G RHGRDYH RKRYRD
Subjt:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD

Query:  DDRHAHESSKRTSDYDSRRNPDHESRP-KNPRFRESGDSDEEDDDDRKQR
        DD HAHESSKRTSDY+SRRNPDHESRP KNPRFRESGDSDEEDDDDRKQR
Subjt:  DDRHAHESSKRTSDYDSRRNPDHESRP-KNPRFRESGDSDEEDDDDRKQR

A0A6J1FUM2 Nuclear cap-binding protein subunit 24.1e-139100Show/hide
Query:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL
        MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL
Subjt:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL

Query:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD
        DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD
Subjt:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD

Query:  DDRHAHESSKRTSDYDSRRNPDHESRPKNPRFRESGDSDEEDDDDRKQRH
        DDRHAHESSKRTSDYDSRRNPDHESRPKNPRFRESGDSDEEDDDDRKQRH
Subjt:  DDRHAHESSKRTSDYDSRRNPDHESRPKNPRFRESGDSDEEDDDDRKQRH

A0A6J1FX36 Nuclear cap-binding protein subunit 21.0e-13799.6Show/hide
Query:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL
        MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL
Subjt:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL

Query:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD
        DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD
Subjt:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD

Query:  DDRHAHESSKRTSDYDSRRNPDHESRP-KNPRFRESGDSDEEDDDDRKQRH
        DDRHAHESSKRTSDYDSRRNPDHESRP KNPRFRESGDSDEEDDDDRKQRH
Subjt:  DDRHAHESSKRTSDYDSRRNPDHESRP-KNPRFRESGDSDEEDDDDRKQRH

A0A6J1J7C7 Nuclear cap-binding protein subunit 27.2e-13698.41Show/hide
Query:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL
        MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCF LYYSREDTEDAVKYISGTIL
Subjt:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL

Query:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD
        DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGS+PSVIPQYGKHGGSHGNG RHGRDYHNRKRYRD
Subjt:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD

Query:  DDRHAHESSKRTSDYDSRRNPDHESRP-KNPRFRESGDSDEEDDDDRKQRH
        DDRHAHESSKRTSDYDSRRNPDHESRP KNPRFRESGDSDEEDDDDRKQRH
Subjt:  DDRHAHESSKRTSDYDSRRNPDHESRP-KNPRFRESGDSDEEDDDDRKQRH

A0A6J1JFW0 Nuclear cap-binding protein subunit 22.9e-13798.8Show/hide
Query:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL
        MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCF LYYSREDTEDAVKYISGTIL
Subjt:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL

Query:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD
        DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGS+PSVIPQYGKHGGSHGNG RHGRDYHNRKRYRD
Subjt:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRD

Query:  DDRHAHESSKRTSDYDSRRNPDHESRPKNPRFRESGDSDEEDDDDRKQRH
        DDRHAHESSKRTSDYDSRRNPDHESRPKNPRFRESGDSDEEDDDDRKQRH
Subjt:  DDRHAHESSKRTSDYDSRRNPDHESRPKNPRFRESGDSDEEDDDDRKQRH

SwissProt top hitse value%identityAlignment
B1WC40 Nuclear cap-binding protein subunit 21.9e-5370.21Show/hide
Query:  KLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADF
        +LS YRD+ F+G  +E E  L+ S T+YVGN+SFYTTEEQ+YELFS++G+IKKIIMGLDK  KT CGFCFV YYSR D E+A++YI+GT LDDR IR D+
Subjt:  KLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADF

Query:  DWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKE
        D GF++GRQ+GRGRSGGQVRDEYR DYD GRGGYGKL QK+
Subjt:  DWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKE

B7P877 Nuclear cap-binding protein subunit 28.6e-5468.09Show/hide
Query:  LSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFD
        LS YRD+ F+G++ E E  L+ STT+YVGNMSFYTTEEQ+YELFS+ G++KK+IMGLD+  KTPCGFCFV YY+RED E+A++Y++GT LDDR IR D+D
Subjt:  LSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFD

Query:  WGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKEL
         GF +GRQ+GRG+SGGQVRDEYRTDYD GRGGYGKL+ + +
Subjt:  WGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKEL

Q84L14 Nuclear cap-binding protein subunit 25.5e-9373.31Show/hide
Query:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL
        MASLFKDP+KLS YRDRRF GTQ+E+E ALQ S TVYVGNMSFYTTEEQ YELFSRAGEI+KIIMGLDKNSKTPCGFCF+LYYSRED EDAVKYISGT+L
Subjt:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL

Query:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQY--GKHGGSHGNGPRHGRDYHNRKRY
        DDRPIR DFDWGF++GRQWGRGRSGGQVRDEYRTDYDPGRGGYGK+VQKELEAQR+LVDYG     + P   PQY  G     +G+  R+ RDY  RKRY
Subjt:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQY--GKHGGSHGNGPRHGRDYHNRKRY

Query:  RDDDRHAHESSKRTSDYDSRRNPDHESRPKNPRFRESGDSDEEDDDDRKQR
        R+D+R    SS+R  D + +R  D     KNPRFRE GDSDEEDDD  K+R
Subjt:  RDDDRHAHESSKRTSDYDSRRNPDHESRPKNPRFRESGDSDEEDDDDRKQR

Q9CQ49 Nuclear cap-binding protein subunit 21.9e-5370.21Show/hide
Query:  KLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADF
        +LS YRD+ F+G  +E E  L+ S T+YVGN+SFYTTEEQ+YELFS++G+IKKIIMGLDK  KT CGFCFV YYSR D E+A++YI+GT LDDR IR D+
Subjt:  KLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADF

Query:  DWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKE
        D GF++GRQ+GRGRSGGQVRDEYR DYD GRGGYGKL QK+
Subjt:  DWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKE

Q9XFD1 Nuclear cap-binding protein subunit 21.2e-10375.78Show/hide
Query:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL
        MASLFK+ +KLS YRDRRF GTQ+EF+ AL+ STTVY+GN+SFYTTEEQ+YELFSRAGEIKKIIMGLDKN+KTPCGFCFVL+YSREDTEDAVKYISGTIL
Subjt:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL

Query:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIP-QYG---KHGGSHGNG--PRHGRDYHN
        DDRPIR DFDWGFQ+GRQWGRGRSGGQVRDEYRTDYDP RGGYGKLVQKELEAQRQLVDYGTGSLG+ P   P  YG   + GG++G G   RHGR  ++
Subjt:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIP-QYG---KHGGSHGNG--PRHGRDYHN

Query:  RKRYRDDDRHAHESSKRTSDYDSRRNPDHESRP-KNPRFRESGDSDEEDDDDRKQR
        RKR RDDDR+  ++S+R +D++SRR+ D + RP KNPRFRESGDSD++ +DDRK+R
Subjt:  RKRYRDDDRHAHESSKRTSDYDSRRNPDHESRP-KNPRFRESGDSDEEDDDDRKQR

Arabidopsis top hitse value%identityAlignment
AT1G66260.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.5e-0832.91Show/hide
Query:  LQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRAD
        ++  TTVY+ N+    T E + EL++  GE+K+  +  DKN + P G   V+Y  R D   A++  +  +LD RP++ +
Subjt:  LQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRAD

AT1G66260.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.5e-0832.91Show/hide
Query:  LQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRAD
        ++  TTVY+ N+    T E + EL++  GE+K+  +  DKN + P G   V+Y  R D   A++  +  +LD RP++ +
Subjt:  LQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRAD

AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.5e-0834.62Show/hide
Query:  LALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPI
        +A + S  ++V  +S YTT++ + +LFS  G+IK+  +  D  ++ P GF F+ + S +D   A+K + G I+D R I
Subjt:  LALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPI

AT5G44200.1 CAP-binding protein 208.4e-10575.78Show/hide
Query:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL
        MASLFK+ +KLS YRDRRF GTQ+EF+ AL+ STTVY+GN+SFYTTEEQ+YELFSRAGEIKKIIMGLDKN+KTPCGFCFVL+YSREDTEDAVKYISGTIL
Subjt:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL

Query:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIP-QYG---KHGGSHGNG--PRHGRDYHN
        DDRPIR DFDWGFQ+GRQWGRGRSGGQVRDEYRTDYDP RGGYGKLVQKELEAQRQLVDYGTGSLG+ P   P  YG   + GG++G G   RHGR  ++
Subjt:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIP-QYG---KHGGSHGNG--PRHGRDYHN

Query:  RKRYRDDDRHAHESSKRTSDYDSRRNPDHESRP-KNPRFRESGDSDEEDDDDRKQR
        RKR RDDDR+  ++S+R +D++SRR+ D + RP KNPRFRESGDSD++ +DDRK+R
Subjt:  RKRYRDDDRHAHESSKRTSDYDSRRNPDHESRP-KNPRFRESGDSDEEDDDDRKQR

AT5G44200.2 CAP-binding protein 208.4e-10575.78Show/hide
Query:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL
        MASLFK+ +KLS YRDRRF GTQ+EF+ AL+ STTVY+GN+SFYTTEEQ+YELFSRAGEIKKIIMGLDKN+KTPCGFCFVL+YSREDTEDAVKYISGTIL
Subjt:  MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTIL

Query:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIP-QYG---KHGGSHGNG--PRHGRDYHN
        DDRPIR DFDWGFQ+GRQWGRGRSGGQVRDEYRTDYDP RGGYGKLVQKELEAQRQLVDYGTGSLG+ P   P  YG   + GG++G G   RHGR  ++
Subjt:  DDRPIRADFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIP-QYG---KHGGSHGNG--PRHGRDYHN

Query:  RKRYRDDDRHAHESSKRTSDYDSRRNPDHESRP-KNPRFRESGDSDEEDDDDRKQR
        RKR RDDDR+  ++S+R +D++SRR+ D + RP KNPRFRESGDSD++ +DDRK+R
Subjt:  RKRYRDDDRHAHESSKRTSDYDSRRNPDHESRP-KNPRFRESGDSDEEDDDDRKQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGTTGTTCAAGGACCCATCAAAGCTATCTGTATACCGGGATAGAAGATTTCAGGGAACCCAAGATGAATTTGAACTGGCTCTTCAGACTTCAACCACCGTTTA
CGTGGGAAATATGTCCTTTTATACAACAGAAGAGCAAGTTTATGAGCTTTTTTCTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACAC
CTTGTGGCTTTTGTTTTGTCCTATACTATTCTCGGGAGGATACCGAGGATGCTGTAAAATATATAAGTGGAACAATTCTTGATGATCGGCCCATCCGTGCGGATTTTGAT
TGGGGATTTCAGGATGGCAGGCAATGGGGTCGTGGTCGAAGTGGTGGACAGGTGCGTGATGAATATCGAACAGACTATGATCCTGGTAGAGGTGGCTATGGAAAGTTAGT
TCAGAAAGAGTTGGAAGCACAGAGGCAGCTTGTGGATTACGGTACTGGTTCACTAGGCTCTGTGCCGTCAGTCATACCGCAGTACGGTAAACATGGTGGAAGCCACGGAA
ATGGGCCTCGTCATGGAAGAGATTACCACAATCGTAAGCGCTACCGAGATGATGATCGGCATGCCCATGAAAGCTCCAAGAGAACTTCAGATTATGACTCTAGAAGAAAT
CCTGATCATGAATCAAGACCGAAAAATCCAAGGTTCCGGGAGAGTGGCGATTCTGATGAAGAGGATGACGATGACCGAAAACAGCGACACTAA
mRNA sequenceShow/hide mRNA sequence
AGAATTGCACGAGCAGAATCGGGCGACTGAGCTCACCCAACGAGTTCTCCAGTTCTTAAGCTAATTCCAACCCGAAATTTACCTGCTAATTTGATTTGAAGCGGCTCTAA
TCTGTGCTTTACTTCTTCCTTTTCCACTTCTGTTTCTCGCATTGGCTGATTATATTATCGCCCAAATTCCTGACACCTGATATAGACGATTGCATTTTGAACCTTTGATT
CGTTGAGTGTCTGCTAGCTACTTCAGCTAGAGTGGTTTTTCGAGTCTTGTTGCAGATTTTGTTCTTCTTGGGTTCATGGCTTCGTTGTTCAAGGACCCATCAAAGCTATC
TGTATACCGGGATAGAAGATTTCAGGGAACCCAAGATGAATTTGAACTGGCTCTTCAGACTTCAACCACCGTTTACGTGGGAAATATGTCCTTTTATACAACAGAAGAGC
AAGTTTATGAGCTTTTTTCTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTATACTATTCTCGG
GAGGATACCGAGGATGCTGTAAAATATATAAGTGGAACAATTCTTGATGATCGGCCCATCCGTGCGGATTTTGATTGGGGATTTCAGGATGGCAGGCAATGGGGTCGTGG
TCGAAGTGGTGGACAGGTGCGTGATGAATATCGAACAGACTATGATCCTGGTAGAGGTGGCTATGGAAAGTTAGTTCAGAAAGAGTTGGAAGCACAGAGGCAGCTTGTGG
ATTACGGTACTGGTTCACTAGGCTCTGTGCCGTCAGTCATACCGCAGTACGGTAAACATGGTGGAAGCCACGGAAATGGGCCTCGTCATGGAAGAGATTACCACAATCGT
AAGCGCTACCGAGATGATGATCGGCATGCCCATGAAAGCTCCAAGAGAACTTCAGATTATGACTCTAGAAGAAATCCTGATCATGAATCAAGACCGAAAAATCCAAGGTT
CCGGGAGAGTGGCGATTCTGATGAAGAGGATGACGATGACCGAAAACAGCGACACTAACCCTAGTGTCATTGCCATATTATAACGTGAGTTGTAGGAGGTAGCAGAAAGG
ATAATTTCAAAGCCCAATTACAAATTTGATTGCATTAAGGTTATTTGATGTAATTGGAGAAGGTCAACTTGGAGGCCTCAATTGTTAGCCCCATATTTCCAGATTCATAT
GAAGCCCATGATATAGACAACATAATATCTAAATCTCCAAGGGGAATTAGTTTGAGGCGTAGAGGCATTGGAAAACACTTCAATGAATGAAAAATGGTTTGGTTGCTACC
CATTTAATTAAACTGATAGCGGCAGCTGAAGGGTGTCCCCCACAGTCAAAGAGGCGACCACTAGGGCTGCCCCCACTTTTACGTCGGGTCAAAGTCAGTCTTCGTAATGC
AATGATATCAGGTACATATTATCTTTTTTTAAGATCAGAAATTCAAATCTTCTTTATTTTACTTTTTTAAGATTTATTTTTAG
Protein sequenceShow/hide protein sequence
MASLFKDPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFD
WGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRDDDRHAHESSKRTSDYDSRRN
PDHESRPKNPRFRESGDSDEEDDDDRKQRH