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CmoCh20G006630 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G006630
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranslation machinery-associated protein 7
Genome locationCmo_Chr20:3239025..3242367
RNA-Seq ExpressionCmoCh20G006630
SyntenyCmoCh20G006630
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR015157 - Translation machinery associated TMA7


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570922.1 hypothetical protein SDJN03_29837, partial [Cucurbita argyrosperma subsp. sororia]4.3e-0655.56Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEK-VRHLELRAR
        MSSKQGGKAKPLKQPKVDKKEYDE                        VDLAN+QKKKDEEK +R L+ +A+
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEK-VRHLELRAR

KAG7010765.1 hypothetical protein SDJN02_27561 [Cucurbita argyrosperma subsp. argyrosperma]3.3e-1470.13Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSH-----VDLANMQKKKDEEK-VRHLELRAR
        MSSKQGGKAKPLKQPKVDKKEYDE          ALDTKNLRVYEDSH     VDLAN+QKKKDEEK +R L+ +A+
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSH-----VDLANMQKKKDEEK-VRHLELRAR

KGN56723.1 hypothetical protein Csa_009747 [Cucumis sativus]5.6e-0656.34Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEKVRHLELRAR
        MSSKQGGKAKPLKQPKVDKK+YDE                        VD+ANMQKKKDEEK    ELRA+
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEKVRHLELRAR

XP_022943547.1 translation machinery-associated protein 7-like isoform X2 [Cucurbita moschata]1.5e-0656.94Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEK-VRHLELRAR
        MSSKQGGKAKPLKQPKVDKKEYDE                        VDLANMQKKKDEEK +R L+ +A+
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEK-VRHLELRAR

XP_023534319.1 translation machinery-associated protein 7-like [Cucurbita pepo subsp. pepo]5.6e-0656.34Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEKVRHLELRAR
        MSSKQGGKAKPLKQPK DKKEYDE                        VD+ANMQKKKDEEK    ELRA+
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEKVRHLELRAR

TrEMBL top hitse value%identityAlignment
A0A0A0L4M8 F9L1.21 protein2.7e-0656.34Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEKVRHLELRAR
        MSSKQGGKAKPLKQPKVDKK+YDE                        VD+ANMQKKKDEEK    ELRA+
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEKVRHLELRAR

A0A0D2NPI6 Uncharacterized protein4.6e-0654.93Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEKVRHLELRAR
        MSSKQGGKAKPLKQPK +KKEYDE +    C              D   DLAN+QKKK+EEK    ELRA+
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEKVRHLELRAR

A0A6J1CWS4 translation machinery-associated protein 72.7e-0656.34Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEKVRHLELRAR
        MSSKQGGKAKPLKQPKVDKKEYDE                        VD+AN+QKKKDEEK    ELRA+
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEKVRHLELRAR

A0A6J1FTB5 translation machinery-associated protein 7-like isoform X27.1e-0756.94Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEK-VRHLELRAR
        MSSKQGGKAKPLKQPKVDKKEYDE                        VDLANMQKKKDEEK +R L+ +A+
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEK-VRHLELRAR

A0A6J1JGF3 translation machinery-associated protein 7-like isoform X27.1e-0756.94Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEK-VRHLELRAR
        MSSKQGGKAKPLKQPKVDKKEYDE                        VDLANMQKKKDEEK +R L+ +A+
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEK-VRHLELRAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G15270.1 Translation machinery associated TMA73.4e-0954.93Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEKVRHLELRAR
        MSSKQGGKAKPLKQPK DKKEYDE+                        DLAN+QKKKDEEK    ELRA+
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEKVRHLELRAR

AT3G16040.1 Translation machinery associated TMA75.9e-0649.3Show/hide
Query:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEKVRHLELRAR
        MSSKQGGK KPLKQPK  KKEYDE                         D+  MQKKKDEEK    ELRA+
Subjt:  MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEKVRHLELRAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCCAAGCAAGGAGGGAAAGCAAAGCCTTTGAAGCAACCCAAGGTTGACAAGAAAGAATACGATGAGTCGACTCCCGAGCACATCTGTGTGAACCAGGCCCTCGA
TACCAAGAACCTTCGAGTTTACGAGGATAGCCACGTTGATCTGGCGAATATGCAGAAGAAGAAGGACGAGGAAAAGGTGAGACACCTTGAACTTAGAGCAAGAAACTATC
CCACAACTCTCTTGTGGCCCATGGGTAGCTATAATTTTGAGTTGTTTTATGGAATTACAGGCGCTGAGAGAGCTGAAAGCGAAGGCCCAACAGAAGGGGGCCTTTGGAGG
TGCTGGGCTGAAGAAGAGCGGGAAGAAATGATGAACTTCCCACGCAATATATAA
mRNA sequenceShow/hide mRNA sequence
TCGATAACTTGACAAGAACAGCAATTTTGTTGACCGACCCAATACCTTTCGGGTTGGATTCGGGCATCTCCGTATACAAAAACGCAACCTAGGGCTGCCATTCGTCCGGT
TTTGCCTTGATTTCCACCGGCTTCTGCTTCTCATTCTCTTCTTTGCTAAAGTTGCCGGTTGTGATACTTTGCGAGCCGTTGATTGCCGCCCACGGGCGTTCCTTCGTTGT
GCTATTCGATTCAGGCCAAACCTTATCTTTCCGCCATGTCGTCCAAGCAAGGAGGGAAAGCAAAGCCTTTGAAGCAACCCAAGGTTGACAAGAAAGAATACGATGAGTCG
ACTCCCGAGCACATCTGTGTGAACCAGGCCCTCGATACCAAGAACCTTCGAGTTTACGAGGATAGCCACGTTGATCTGGCGAATATGCAGAAGAAGAAGGACGAGGAAAA
GGTGAGACACCTTGAACTTAGAGCAAGAAACTATCCCACAACTCTCTTGTGGCCCATGGGTAGCTATAATTTTGAGTTGTTTTATGGAATTACAGGCGCTGAGAGAGCTG
AAAGCGAAGGCCCAACAGAAGGGGGCCTTTGGAGGTGCTGGGCTGAAGAAGAGCGGGAAGAAATGATGAACTTCCCACGCAATATATAATCTAGAGAGATACTACGAGTC
CTCCATCCTAGATGGACAGATTCCATCGGTAAAATTGTAAGATGGGAGATTAGGGCTTATGGTCATAAGTGGCCAATATTAACATTTATAATTGCAGCTGCAACTGGCAA
GTGA
Protein sequenceShow/hide protein sequence
MSSKQGGKAKPLKQPKVDKKEYDESTPEHICVNQALDTKNLRVYEDSHVDLANMQKKKDEEKVRHLELRARNYPTTLLWPMGSYNFELFYGITGAERAESEGPTEGGLWR
CWAEEEREEMMNFPRNI