CuGenDBv2

Gene ID	CmoCh20G006800
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Nuclear transcription factor Y subunit B-3
Genome location	Cmo_Chr20:3342307..3342840
RNA-Seq Expression	CmoCh20G006800
Synteny	CmoCh20G006800
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6570945.1 hypothetical protein SDJN03_29860, partial [Cucurbita argyrosperma subsp. sororia]

4.8e-88

98.29

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Query:  MLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL
        MLYFSISKTNPFPLHKSLHQQQQ+EQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL
Subjt:  MLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL

Query:  PTGHYVSHKSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        PTG+YVSHKSDDDDDDD+DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  PTGHYVSHKSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

KAG7010784.1 hypothetical protein SDJN02_27580, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.4e-84

96.57

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Query:  MLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL
        MLYFSISKTNPFPLHKSLHQQQQ+EQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFT TEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL
Subjt:  MLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL

Query:  PTGHYVSHKSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        PTGHYVSHKSDDDD    DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  PTGHYVSHKSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

XP_022943897.1 uncharacterized protein LOC111448485 [Cucurbita moschata]

1.3e-90

100

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Query:  MSMLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEI
        MSMLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEI
Subjt:  MSMLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEI

Query:  ALPTGHYVSHKSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        ALPTGHYVSHKSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  ALPTGHYVSHKSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

XP_022985724.1 uncharacterized protein LOC111483694 [Cucurbita maxima]

1.7e-85

96.05

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Query:  MSMLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEI
        MSMLYFSISKTNPFPLHKSLH QQQ+EQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTA NLYRSDDGSISDEESLIEI
Subjt:  MSMLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEI

Query:  ALPTGHYVSHKSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        ALPTGHYV+HKS  DDDDD+DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  ALPTGHYVSHKSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

XP_023513390.1 uncharacterized protein LOC111777891 [Cucurbita pepo subsp. pepo]

8.1e-80

92.66

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Query:  MSMLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEI
        MSMLYFSISKTNPFPLHKSLHQQQ++EQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTA N+YRSDDGSISDEESLIEI
Subjt:  MSMLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEI

Query:  ALPTGHYVSHKSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        ALPT HYVSHKS DDDDDD+DDMSF      EFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  ALPTGHYVSHKSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CMD0 uncharacterized protein LOC103502111

2.1e-57

73.91

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Query:  MSMLYFSISKTNPFPLHKSLHQQQQQE---QKELTFLSSDHRNFSSASAPTV-DLLSESECADDNFTTTEESEVEWPFFDRS--TANNLYRSDDGSISDE
        MSMLYFSISK +  P+ K + +Q+++E   QKELTF  SDH   SSASAPT  DLLSESECADDNFTTTEESEVEWP+FD     A + +RSDDGSISDE
Subjt:  MSMLYFSISKTNPFPLHKSLHQQQQQE---QKELTFLSSDHRNFSSASAPTV-DLLSESECADDNFTTTEESEVEWPFFDRS--TANNLYRSDDGSISDE

Query:  ESLIEIALPTGHYVSHKSDD-DDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        ESLIEIALPTGHYVS K DD D+D+DEDD  F +QKLS+FQ    KKNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  ESLIEIALPTGHYVSHKSDD-DDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A5D3CJH9 Uncharacterized protein

2.1e-57

73.91

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Query:  MSMLYFSISKTNPFPLHKSLHQQQQQE---QKELTFLSSDHRNFSSASAPTV-DLLSESECADDNFTTTEESEVEWPFFDRS--TANNLYRSDDGSISDE
        MSMLYFSISK +  P+ K + +Q+++E   QKELTF  SDH   SSASAPT  DLLSESECADDNFTTTEESEVEWP+FD     A + +RSDDGSISDE
Subjt:  MSMLYFSISKTNPFPLHKSLHQQQQQE---QKELTFLSSDHRNFSSASAPTV-DLLSESECADDNFTTTEESEVEWPFFDRS--TANNLYRSDDGSISDE

Query:  ESLIEIALPTGHYVSHKSDD-DDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        ESLIEIALPTGHYVS K DD D+D+DEDD  F +QKLS+FQ    KKNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  ESLIEIALPTGHYVSHKSDD-DDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A6J1CG35 uncharacterized protein LOC111011203

2.5e-58

73.91

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Query:  MSMLYFSISKTN------PFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDE
        MSMLYF+ISK N      P P+ K + +++++ + E++F S   + FSSASAPT DLLSESECADDNFTTTEESEVEWPF DR+TA+N  RS DGSISDE
Subjt:  MSMLYFSISKTN------PFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDE

Query:  ESLIEIALPTGHYVSHKSDDD-DDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        ESLIEIALPTGHYVSHK DDD +D+DEDDMSF  QKLS+FQK   +KNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  ESLIEIALPTGHYVSHKSDDD-DDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A6J1FUA8 uncharacterized protein LOC111448485

6.5e-91

100

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Query:  MSMLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEI
        MSMLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEI
Subjt:  MSMLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEI

Query:  ALPTGHYVSHKSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        ALPTGHYVSHKSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  ALPTGHYVSHKSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A6J1JE34 uncharacterized protein LOC111483694

8.2e-86

96.05

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Query:  MSMLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEI
        MSMLYFSISKTNPFPLHKSLH QQQ+EQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTA NLYRSDDGSISDEESLIEI
Subjt:  MSMLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEI

Query:  ALPTGHYVSHKSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        ALPTGHYV+HKS  DDDDD+DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  ALPTGHYVSHKSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G04480.1 unknown protein

9.8e-15

35.33

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Query:  FPL---HKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSH
        FP+   H S+   +Q + +E  +++            T D+  +SE   +N   T E +                 DDG+I D+ESLIE++LP+GHY+ H
Subjt:  FPL---HKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSH

Query:  KSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
          + + +       +   K+ +F+       L +LL EIND  EE+NLIEIDIS+GSIKYSRFEI+A
Subjt:  KSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

AT5G35870.1 unknown protein

1.0e-11

41.75

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Query:  STANNLYRS---DDGSISDEESLIEIALPTGHYVSHKSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFE
        +T N++ ++   DDG+I DEESLIE++LP+GHY+ H         + D    +  + +F+       L++L AE     E++NLIEIDIS+GSIK SRF+
Subjt:  STANNLYRS---DDGSISDEESLIEIALPTGHYVSHKSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFE

Query:  IEA
        I+A
Subjt:  IEA

Sequences

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CDS sequence

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ATGTCCATGCTTTATTTTTCAATCTCCAAAACAAACCCATTTCCGCTTCACAAATCTTTACACCAACAACAACAACAAGAACAGAAAGAACTAACCTTTCTCTCCTCCGA
TCACCGGAATTTCTCGTCGGCGTCAGCTCCTACTGTGGATTTGCTGTCGGAAAGTGAATGTGCCGATGATAATTTCACGACCACCGAGGAATCTGAAGTGGAGTGGCCGT
TTTTTGACCGGTCAACGGCGAATAACCTTTACCGGTCTGATGATGGTTCCATTTCTGACGAGGAAAGTTTGATTGAAATCGCTCTCCCGACCGGACATTACGTCAGCCAT
AAGTCCGATGACGACGACGACGACGACGAAGACGACATGTCGTTTTGTTTCCAGAAACTGTCGGAGTTTCAAAAGCTTAAGAGGAAGAAGAATCTTGTGGAGCTGTTGGC
TGAAATTAACGACATCAACGAGGAGGAGAATTTGATCGAGATAGACATATCGATGGGATCCATTAAATATTCAAGGTTCGAAATTGAAGCTTAA

mRNA sequence

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Protein sequence

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MSMLYFSISKTNPFPLHKSLHQQQQQEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSH
KSDDDDDDDEDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

CmoCh20G006800 (gene) of Cucurbita moschata (Rifu) v1 genome