CuGenDBv2

Gene ID	CmoCh20G007120
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L23, chloroplastic
Genome location	Cmo_Chr20:3505632..3506806
RNA-Seq Expression	CmoCh20G007120
Synteny	CmoCh20G007120
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR013025 - Ribosomal protein L25/L23

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QBS50132.1 ribosomal protein L23 [Syringa pubescens subsp. microphylla]

1.3e-33

96.05

Show/hide

Query:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI
        MDGIKYAVFTDKS RLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYR  I
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI

RXV70581.1 50S ribosomal protein L23, partial [bacterium 1XD8-92]

1.6e-33

96.05

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Query:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI
        MDGIKYAVFTDKS RLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYR  I
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI

WP_131792710.1 50S ribosomal protein L23 [Candidatus Frankia datiscae]

1.6e-33

96.05

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Query:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI
        MDGIKYAVFTDKS RLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYR  I
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI

YP_009447493.1 ribosomal protein L23 [Cucurbita maxima]

3.3e-34

97.37

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Query:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI
        MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYR  I
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI

YP_009707931.1 ribosomal protein L23 [Begonia pulchrifolia]

1.6e-33

96.05

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Query:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI
        MDGIKYAVFTDKS RLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYR  I
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI

TrEMBL top hits

e value

%identity

Alignment

A0A0S2IEI3 50S ribosomal protein L23, chloroplastic

1.6e-34

97.37

Show/hide

Query:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI
        MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYR  I
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI

A0A0S2IFZ5 50S ribosomal protein L23, chloroplastic

1.6e-34

97.37

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Query:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI
        MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYR  I
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI

A0A0S2IGM7 50S ribosomal protein L23, chloroplastic

1.6e-34

97.37

Show/hide

Query:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI
        MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYR  I
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI

A0A2H4T1X4 50S ribosomal protein L23, chloroplastic

1.6e-34

97.37

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Query:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI
        MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYR  I
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI

A0A344AXT7 50S ribosomal protein L23, chloroplastic

1.6e-34

97.37

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Query:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI
        MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYR  I
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI

SwissProt top hits

e value

%identity

Alignment

Q06R67 50S ribosomal protein L23, chloroplastic

6.2e-36

94.74

Show/hide

Query:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI
        MDGIKYAVFT+KS RLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYR  I
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI

Q09FP7 50S ribosomal protein L23, chloroplastic

8.2e-36

94.74

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Query:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI
        MDGIKYAVFTDKS RLLG NQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYR  I
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI

Q0PUX7 50S ribosomal protein L23, chloroplastic

8.2e-36

94.74

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Query:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI
        MDGIKYAVFTDKS RLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGP MGHTMHYR  I
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI

Q0ZIV5 50S ribosomal protein L23, chloroplastic

2.1e-36

96.05

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Query:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI
        MDGIKYAVFTDKS RLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYR  I
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI

Q4VZK6 50S ribosomal protein L23, chloroplastic

2.1e-36

96.05

Show/hide

Query:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI
        MDGIKYAVFTDKS RLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYR  I
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI

Arabidopsis top hits

e value

%identity

Alignment

ATCG00840.1 ribosomal protein L23.1

4.2e-35

90.79

Show/hide

Query:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI
        MDGIKYAVFTDKS RLLGKNQYT NVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGK +RMGPI+GHTMHYR  I
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI

ATCG01300.1 ribosomal protein L23

4.2e-35

90.79

Show/hide

Query:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI
        MDGIKYAVFTDKS RLLGKNQYT NVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGK +RMGPI+GHTMHYR  I
Subjt:  MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRI

Sequences

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CDS sequence

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ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTACTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCGGGATCAACTAGGACAGAAATAAAGCA
TTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGGCTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGAC
TTCGCATACAAGTTCGACGCAAGCATGTAGCCAGTCGAGTTCAACGGTTCGAGTTCAAGAACACGAGAGGCCGCTCCCGAGCCAAGCATAATGTTTCCATAGCTCCTACA
AGAGCTCAATAG

mRNA sequence

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Protein sequence

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MDGIKYAVFTDKSTRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRLRIQVRRKHVASRVQRFEFKNTRGRSRAKHNVSIAPT
RAQ

CmoCh20G007120 (gene) of Cucurbita moschata (Rifu) v1 genome