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CmoCh20G007160 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G007160
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionsorcin-like
Genome locationCmo_Chr20:3524137..3527537
RNA-Seq ExpressionCmoCh20G007160
SyntenyCmoCh20G007160
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010818.1 hypothetical protein SDJN02_27614 [Cucurbita argyrosperma subsp. argyrosperma]2.0e-4573.05Show/hide
Query:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNALA-------------------------------------
        MENTGILKEWFDRVDSEKSGSIIAPQLQVDLL+FLIQRFYPLRLKVPIVDKISGFLHDQNALA                                     
Subjt:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNALA-------------------------------------

Query:  LQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE
        LQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE
Subjt:  LQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCE

XP_004139969.1 sorcin isoform X2 [Cucumis sativus]6.1e-2661.86Show/hide
Query:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNA--------------LALQQAFSDLERGRGYLVPEDVYEA
        MENTGILKEWFDRVDSEKSGSI APQLQ  L +  +   +P  +   +   I  +  D+N               L LQQAFSDLERGRGYLVP+DVYEA
Subjt:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNA--------------LALQQAFSDLERGRGYLVPEDVYEA

Query:  LVKIGFTLDSPAFYTVCE
        LVKIGFTLDSPAFYTVCE
Subjt:  LVKIGFTLDSPAFYTVCE

XP_011656916.1 sorcin isoform X1 [Cucumis sativus]6.1e-2661.86Show/hide
Query:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNA--------------LALQQAFSDLERGRGYLVPEDVYEA
        MENTGILKEWFDRVDSEKSGSI APQLQ  L +  +   +P  +   +   I  +  D+N               L LQQAFSDLERGRGYLVP+DVYEA
Subjt:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNA--------------LALQQAFSDLERGRGYLVPEDVYEA

Query:  LVKIGFTLDSPAFYTVCE
        LVKIGFTLDSPAFYTVCE
Subjt:  LVKIGFTLDSPAFYTVCE

XP_022943751.1 sorcin-like [Cucurbita moschata]1.9e-2763.56Show/hide
Query:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNA--------------LALQQAFSDLERGRGYLVPEDVYEA
        MENTGILKEWFDRVDSEKSGSIIAPQLQ  L +  +   +PL +   +   I  +  D+N               + LQQAFSDLERGRGYLVPEDVYEA
Subjt:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNA--------------LALQQAFSDLERGRGYLVPEDVYEA

Query:  LVKIGFTLDSPAFYTVCE
        LVKIGFTLDSPAFYTVCE
Subjt:  LVKIGFTLDSPAFYTVCE

XP_023511846.1 sorcin-like [Cucurbita pepo subsp. pepo]1.6e-2662.71Show/hide
Query:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNA--------------LALQQAFSDLERGRGYLVPEDVYEA
        MENTGILKEWFDRVDSEKSGSIIA QLQ  L +  +   +PL +   +   I  +  D+N               + LQQAFSDLERGRGYLVPEDVYEA
Subjt:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNA--------------LALQQAFSDLERGRGYLVPEDVYEA

Query:  LVKIGFTLDSPAFYTVCE
        LVKIGFTLDSPAFYTVCE
Subjt:  LVKIGFTLDSPAFYTVCE

TrEMBL top hitse value%identityAlignment
A0A0A0KAX1 Uncharacterized protein2.9e-2661.86Show/hide
Query:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNA--------------LALQQAFSDLERGRGYLVPEDVYEA
        MENTGILKEWFDRVDSEKSGSI APQLQ  L +  +   +P  +   +   I  +  D+N               L LQQAFSDLERGRGYLVP+DVYEA
Subjt:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNA--------------LALQQAFSDLERGRGYLVPEDVYEA

Query:  LVKIGFTLDSPAFYTVCE
        LVKIGFTLDSPAFYTVCE
Subjt:  LVKIGFTLDSPAFYTVCE

A0A6J1CGJ0 sorcin-like isoform X25.0e-2660.17Show/hide
Query:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNA--------------LALQQAFSDLERGRGYLVPEDVYEA
        MENTGILKEWFDRVDSEKSGS+ APQLQ  L +  +   +PL +   +   I  +  D+N               L LQQAFSDLERGRG+LVP DVYEA
Subjt:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNA--------------LALQQAFSDLERGRGYLVPEDVYEA

Query:  LVKIGFTLDSPAFYTVCE
        LVKIG+TLDSPAFYTVCE
Subjt:  LVKIGFTLDSPAFYTVCE

A0A6J1CIP5 sorcin-like isoform X15.0e-2660.17Show/hide
Query:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNA--------------LALQQAFSDLERGRGYLVPEDVYEA
        MENTGILKEWFDRVDSEKSGS+ APQLQ  L +  +   +PL +   +   I  +  D+N               L LQQAFSDLERGRG+LVP DVYEA
Subjt:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNA--------------LALQQAFSDLERGRGYLVPEDVYEA

Query:  LVKIGFTLDSPAFYTVCE
        LVKIG+TLDSPAFYTVCE
Subjt:  LVKIGFTLDSPAFYTVCE

A0A6J1FSK3 sorcin-like9.2e-2863.56Show/hide
Query:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNA--------------LALQQAFSDLERGRGYLVPEDVYEA
        MENTGILKEWFDRVDSEKSGSIIAPQLQ  L +  +   +PL +   +   I  +  D+N               + LQQAFSDLERGRGYLVPEDVYEA
Subjt:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNA--------------LALQQAFSDLERGRGYLVPEDVYEA

Query:  LVKIGFTLDSPAFYTVCE
        LVKIGFTLDSPAFYTVCE
Subjt:  LVKIGFTLDSPAFYTVCE

A0A6J1JFX0 sorcin-like9.2e-2863.56Show/hide
Query:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNA--------------LALQQAFSDLERGRGYLVPEDVYEA
        MENTGILKEWFDRVDSEKSGSIIAPQLQ  L +  +   +PL +   +   I  +  D+N               + LQQAFSDLERGRGYLVPEDVYEA
Subjt:  MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNA--------------LALQQAFSDLERGRGYLVPEDVYEA

Query:  LVKIGFTLDSPAFYTVCE
        LVKIGFTLDSPAFYTVCE
Subjt:  LVKIGFTLDSPAFYTVCE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATACGGGAATTCTGAAGGAGTGGTTCGATCGAGTTGATTCGGAGAAGTCTGGAAGCATCATAGCTCCTCAGCTTCAGGTTGATCTTCTTCTTTTTCTTATTCA
AAGATTTTATCCTCTTCGTCTCAAAGTCCCGATCGTTGACAAAATTTCTGGATTCCTCCATGATCAGAATGCTCTGGCGCTTCAGCAAGCCTTCTCTGACTTGGAAAGAG
GTCGTGGTTATCTGGTCCCAGAGGATGTATATGAGGCATTGGTTAAGATTGGCTTCACGCTGGACTCTCCGGCATTTTATACTGTCTGCGAGCTGCTAATTGCAGAATAT
GAAAGTGTAAATATTTTCGATGAAGAGGGGACAGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAATACGGGAATTCTGAAGGAGTGGTTCGATCGAGTTGATTCGGAGAAGTCTGGAAGCATCATAGCTCCTCAGCTTCAGGTTGATCTTCTTCTTTTTCTTATTCA
AAGATTTTATCCTCTTCGTCTCAAAGTCCCGATCGTTGACAAAATTTCTGGATTCCTCCATGATCAGAATGCTCTGGCGCTTCAGCAAGCCTTCTCTGACTTGGAAAGAG
GTCGTGGTTATCTGGTCCCAGAGGATGTATATGAGGCATTGGTTAAGATTGGCTTCACGCTGGACTCTCCGGCATTTTATACTGTCTGCGAGCTGCTAATTGCAGAATAT
GAAAGTGTAAATATTTTCGATGAAGAGGGGACAGCATAGCATACTGCAGAAACTGTTCGTGCAACCTGTGGATTTAGAATGGTAGGATATGAACTGTAAACTTACTTTTC
TGTAGCATAATCTATCTTGCTTGTTTATCTGTTGGTTTGGATCCTTGTCTTCGATGCTGGAAAAGGCTTTATGTGATTGGAAAACTAGTAATTGAGTTCTATTCATCTAC
CATATAGCCCGTACGTATATTTTCTTGTAGCCATTCAGTTATATGATTAGTCAATATATTGGTTTATTTTGTTAGTTTCATATTATTATTCGTAAATACCGTTATGTAGA
AATGAACTTGACGATCTAAAATGGACTCCTGTA
Protein sequenceShow/hide protein sequence
MENTGILKEWFDRVDSEKSGSIIAPQLQVDLLLFLIQRFYPLRLKVPIVDKISGFLHDQNALALQQAFSDLERGRGYLVPEDVYEALVKIGFTLDSPAFYTVCELLIAEY
ESVNIFDEEGTA