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CmoCh20G007770 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G007770
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionauxin-responsive protein SAUR24-like
Genome locationCmo_Chr20:3905373..3905666
RNA-Seq ExpressionCmoCh20G007770
SyntenyCmoCh20G007770
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571056.1 Auxin-responsive protein SAUR24, partial [Cucurbita argyrosperma subsp. sororia]1.1e-4696.91Show/hide
Query:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS
        MGIRFLSLVPHAKQILKMQ GFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHH QGGLTIPCKEDAFIDLTSRL VS
Subjt:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS

XP_022944365.1 auxin-responsive protein SAUR24-like [Cucurbita moschata]1.3e-4797.94Show/hide
Query:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS
        MGIRFLSLVPHAKQILKMQ GFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRL VS
Subjt:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS

XP_022944366.1 auxin-responsive protein SAUR24-like [Cucurbita moschata]2.9e-4796.91Show/hide
Query:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS
        MGIRFLSLVPHAKQILKMQ GFTKNQLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRL VS
Subjt:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS

XP_022944371.1 auxin-responsive protein SAUR23-like [Cucurbita moschata]1.8e-49100Show/hide
Query:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS
        MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS
Subjt:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS

XP_023512611.1 auxin-responsive protein SAUR24-like [Cucurbita pepo subsp. pepo]2.9e-4796.91Show/hide
Query:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS
        MGIRFLSLVPHAKQILKMQ GFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLL+HAEEKFGFHHPQGGLTIPCKEDAFIDLTSRL VS
Subjt:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS

TrEMBL top hitse value%identityAlignment
A0A6J1FU83 auxin-responsive protein SAUR24-like1.4e-4796.91Show/hide
Query:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS
        MGIRFLSLVPHAKQILKMQ GFTKNQLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRL VS
Subjt:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS

A0A6J1FU85 auxin-responsive protein SAUR23-like8.8e-50100Show/hide
Query:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS
        MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS
Subjt:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS

A0A6J1FVI4 auxin-responsive protein SAUR24-like6.3e-4897.94Show/hide
Query:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS
        MGIRFLSLVPHAKQILKMQ GFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRL VS
Subjt:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS

A0A6J1G6U1 auxin-responsive protein SAUR23-like1.6e-4693.81Show/hide
Query:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS
        MGIR LSLVPHAKQILKMQ GFTK+QLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQ+LLSHAEE+FGFHHPQGGLTIPCKEDAF+DLTSRLHVS
Subjt:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS

A0A6J1JHE3 auxin-responsive protein SAUR24-like6.3e-4897.94Show/hide
Query:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS
        MGIRFLSLVPHAKQILKMQ GFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRL VS
Subjt:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS

SwissProt top hitse value%identityAlignment
Q9FJF6 Auxin-responsive protein SAUR231.8e-2372.73Show/hide
Query:  PKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLH
        PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS +EE+FGF HP GGLTIPC ED FI++TSRLH
Subjt:  PKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLH

Q9FJF7 Auxin-responsive protein SAUR224.4e-2270.77Show/hide
Query:  PKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRL
        PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS +E++FGF HP GGLTIPC ED FI++TSRL
Subjt:  PKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRL

Q9FJF9 Auxin-responsive protein SAUR217.5e-2270.77Show/hide
Query:  PKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRL
        PKG +AVYVGE Q+KR++VP+SYL+ PSFQ LLS +EE+FGF HP GGLTIPC ED FI++TSRL
Subjt:  PKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRL

Q9FJG0 Auxin-responsive protein SAUR203.4e-2273.44Show/hide
Query:  PKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSR
        PKG +AVYVGE Q+KR++VPISYLN PSFQ LLS +EE+FGF HP GGLTIPC ED FI++TSR
Subjt:  PKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSR

Q9FK62 Auxin-responsive protein SAUR246.8e-2362.65Show/hide
Query:  AKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRL
        AK+IL    G        PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS +EE+FGF HP GGLTIPC ED FI++TSRL
Subjt:  AKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRL

Arabidopsis top hitse value%identityAlignment
AT2G21210.1 SAUR-like auxin-responsive protein family1.0e-2657.14Show/hide
Query:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGE-IQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS
        M IR   ++  +KQ+LK     + N + +PKGH+AVYVGE +Q++RFVVP++YL+HP FQ+LL  AEE+FGF HP GGLTIPC E  FIDL SRL  S
Subjt:  MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGE-IQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS

AT4G34810.1 SAUR-like auxin-responsive protein family6.7e-2655.77Show/hide
Query:  MGIRFLSLVPHAKQILKMQPGFTKNQLD------VPKGHVAVYVG---EIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDL-
        MG+   ++    KQILK+     +N+        VPKGHVAVYVG   E+++KRFVVPIS+LNHPSF++ LS AEE+FGF+HP GGLTIPC+E+ F+DL 
Subjt:  MGIRFLSLVPHAKQILKMQPGFTKNQLD------VPKGHVAVYVG---EIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDL-

Query:  TSRL
         SRL
Subjt:  TSRL

AT4G38840.1 SAUR-like auxin-responsive protein family1.8e-2656.57Show/hide
Query:  MGIRFLSLVPHAKQILK----MQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLH
        M IR   ++  +KQIL+    +    + + LDVPKG++AVYVGE   KRFVVP+SYL+ PSFQ LL  AEE+FGF HP GGLTIPC E+ FIDL SR +
Subjt:  MGIRFLSLVPHAKQILK----MQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLH

AT5G18060.1 SAUR-like auxin-responsive protein family1.3e-2472.73Show/hide
Query:  PKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLH
        PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS +EE+FGF HP GGLTIPC ED FI++TSRLH
Subjt:  PKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLH

AT5G18080.1 SAUR-like auxin-responsive protein family4.8e-2462.65Show/hide
Query:  AKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRL
        AK+IL    G        PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS +EE+FGF HP GGLTIPC ED FI++TSRL
Subjt:  AKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATTCGGTTTCTATCTTTGGTTCCTCATGCCAAGCAAATTCTGAAGATGCAGCCAGGTTTCACCAAAAACCAGTTGGATGTTCCAAAAGGCCATGTGGCAGTTTA
TGTGGGAGAAATTCAAAGGAAGCGGTTCGTGGTTCCAATATCTTATCTAAATCATCCGTCGTTCCAGCAACTTCTCAGCCACGCAGAGGAGAAGTTTGGCTTCCATCATC
CTCAAGGGGGCCTAACAATTCCTTGCAAAGAAGATGCCTTCATCGATCTCACTTCTAGACTGCACGTATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGATTCGGTTTCTATCTTTGGTTCCTCATGCCAAGCAAATTCTGAAGATGCAGCCAGGTTTCACCAAAAACCAGTTGGATGTTCCAAAAGGCCATGTGGCAGTTTA
TGTGGGAGAAATTCAAAGGAAGCGGTTCGTGGTTCCAATATCTTATCTAAATCATCCGTCGTTCCAGCAACTTCTCAGCCACGCAGAGGAGAAGTTTGGCTTCCATCATC
CTCAAGGGGGCCTAACAATTCCTTGCAAAGAAGATGCCTTCATCGATCTCACTTCTAGACTGCACGTATCTTGA
Protein sequenceShow/hide protein sequence
MGIRFLSLVPHAKQILKMQPGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLHVS