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CmoCh20G007830 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G007830
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionauxin-responsive protein SAUR24-like
Genome locationCmo_Chr20:3912207..3912500
RNA-Seq ExpressionCmoCh20G007830
SyntenyCmoCh20G007830
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571056.1 Auxin-responsive protein SAUR24, partial [Cucurbita argyrosperma subsp. sororia]2.9e-4797.94Show/hide
Query:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQQLLSHAEEKFGFHH QGGLTIPCKEDAFIDLTSRLQVS
Subjt:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

XP_022944365.1 auxin-responsive protein SAUR24-like [Cucurbita moschata]3.4e-4898.97Show/hide
Query:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
Subjt:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

XP_022944366.1 auxin-responsive protein SAUR24-like [Cucurbita moschata]1.2e-48100Show/hide
Query:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
Subjt:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

XP_022944371.1 auxin-responsive protein SAUR23-like [Cucurbita moschata]5.0e-4796.91Show/hide
Query:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIRFLSLVPHAKQILKMQ GFTKNQLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRL VS
Subjt:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

XP_023512611.1 auxin-responsive protein SAUR24-like [Cucurbita pepo subsp. pepo]7.7e-4897.94Show/hide
Query:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQQLL+HAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
Subjt:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

TrEMBL top hitse value%identityAlignment
A0A6J1FU83 auxin-responsive protein SAUR24-like5.7e-49100Show/hide
Query:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
Subjt:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

A0A6J1FU85 auxin-responsive protein SAUR23-like2.4e-4796.91Show/hide
Query:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIRFLSLVPHAKQILKMQ GFTKNQLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRL VS
Subjt:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

A0A6J1FVI4 auxin-responsive protein SAUR24-like1.7e-4898.97Show/hide
Query:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
Subjt:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

A0A6J1G6T7 auxin-responsive protein SAUR24-like2.0e-4694.85Show/hide
Query:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIR LSLVPHAKQILKMQSGFTK+QLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQ+LLSHAEE+FGFHHPQGGLTIPCKEDAFIDLTSRLQVS
Subjt:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

A0A6J1JHE3 auxin-responsive protein SAUR24-like1.7e-4898.97Show/hide
Query:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
Subjt:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

SwissProt top hitse value%identityAlignment
Q9FJF7 Auxin-responsive protein SAUR228.9e-2371.21Show/hide
Query:  PKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQ
        PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS +E++FGF HP GGLTIPC ED FI++TSRLQ
Subjt:  PKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQ

Q9FJF9 Auxin-responsive protein SAUR211.5e-2271.21Show/hide
Query:  PKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQ
        PKG +AVYVGE Q+KR++VP+SYL+ PSFQ LLS +EE+FGF HP GGLTIPC ED FI++TSRLQ
Subjt:  PKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQ

Q9FJG0 Auxin-responsive protein SAUR204.0e-2364.56Show/hide
Query:  KMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQ
        K+ S  T      PKG +AVYVGE Q+KR++VPISYLN PSFQ LLS +EE+FGF HP GGLTIPC ED FI++TSR Q
Subjt:  KMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQ

Q9FJG1 Auxin-responsive protein SAUR192.0e-2271.21Show/hide
Query:  PKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQ
        PKG +AVYVGE Q+KR++VP+SYL+ PSFQ LLS +EE+FGF HP GGLTIPC ED FI++TSRLQ
Subjt:  PKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQ

Q9FK62 Auxin-responsive protein SAUR248.0e-2463.1Show/hide
Query:  AKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQ
        AK+IL   +G        PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS +EE+FGF HP GGLTIPC ED FI++TSRLQ
Subjt:  AKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQ

Arabidopsis top hitse value%identityAlignment
AT2G21210.1 SAUR-like auxin-responsive protein family1.0e-2657.14Show/hide
Query:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGE-IQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS
        M IR   ++  +KQ+LK  S  + N + +PKGH+AVYVGE +Q++RF+VP++YL+HP FQ+LL  AEE+FGF HP GGLTIPC E  FIDL SRL  S
Subjt:  MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGE-IQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS

AT4G34790.1 SAUR-like auxin-responsive protein family1.7e-2453.92Show/hide
Query:  SLVPHAKQILKMQSGFTKNQLD-----------VPKGHVAVYVGE-IQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRL
        S++P+AKQI K QS   KN              VPKGHVAVYVGE +++KRF+VPISYLNHP F++ L+ AEE+ GFHH  GGLTIPC+E++F+ L +  
Subjt:  SLVPHAKQILKMQSGFTKNQLD-----------VPKGHVAVYVGE-IQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRL

Query:  QV
        Q+
Subjt:  QV

AT4G34810.1 SAUR-like auxin-responsive protein family1.4e-2656.19Show/hide
Query:  MGIRFLSLVPHAKQILKMQSGFTKNQLD------VPKGHVAVYVG---EIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDL-
        MG+   ++    KQILK+ S   +N+        VPKGHVAVYVG   E+++KRF+VPIS+LNHPSF++ LS AEE+FGF+HP GGLTIPC+E+ F+DL 
Subjt:  MGIRFLSLVPHAKQILKMQSGFTKNQLD------VPKGHVAVYVG---EIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDL-

Query:  TSRLQ
         SRLQ
Subjt:  TSRLQ

AT4G38840.1 SAUR-like auxin-responsive protein family2.3e-2657.73Show/hide
Query:  MGIRFLSLVPHAKQILK----MQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSR
        M IR   ++  +KQIL+    + S  + + LDVPKG++AVYVGE   KRF+VP+SYL+ PSFQ LL  AEE+FGF HP GGLTIPC E+ FIDL SR
Subjt:  MGIRFLSLVPHAKQILK----MQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSR

AT5G18080.1 SAUR-like auxin-responsive protein family5.7e-2563.1Show/hide
Query:  AKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQ
        AK+IL   +G        PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS +EE+FGF HP GGLTIPC ED FI++TSRLQ
Subjt:  AKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATTCGATTTCTATCTTTGGTTCCTCATGCCAAGCAAATTCTGAAGATGCAGTCAGGTTTCACCAAAAACCAGTTGGACGTTCCAAAAGGCCATGTGGCAGTTTA
CGTGGGAGAGATCCAAAGGAAGCGGTTCATGGTTCCAATATCTTACCTAAACCATCCATCGTTCCAGCAACTTCTCAGCCACGCAGAGGAGAAGTTTGGGTTCCATCATC
CTCAAGGGGGACTAACAATTCCTTGCAAAGAAGATGCCTTCATCGATCTCACTTCTAGACTGCAAGTATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGATTCGATTTCTATCTTTGGTTCCTCATGCCAAGCAAATTCTGAAGATGCAGTCAGGTTTCACCAAAAACCAGTTGGACGTTCCAAAAGGCCATGTGGCAGTTTA
CGTGGGAGAGATCCAAAGGAAGCGGTTCATGGTTCCAATATCTTACCTAAACCATCCATCGTTCCAGCAACTTCTCAGCCACGCAGAGGAGAAGTTTGGGTTCCATCATC
CTCAAGGGGGACTAACAATTCCTTGCAAAGAAGATGCCTTCATCGATCTCACTTCTAGACTGCAAGTATCTTGA
Protein sequenceShow/hide protein sequence
MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFMVPISYLNHPSFQQLLSHAEEKFGFHHPQGGLTIPCKEDAFIDLTSRLQVS