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CmoCh20G007900 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G007900
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionauxin-responsive protein SAUR24-like
Genome locationCmo_Chr20:3924501..3929701
RNA-Seq ExpressionCmoCh20G007900
SyntenyCmoCh20G007900
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571047.1 Auxin-responsive protein SAUR24, partial [Cucurbita argyrosperma subsp. sororia]4.1e-3790.8Show/hide
Query:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG
        MGIRLPSSLLPTAKQILKMQLGF KKQSDVVP+GH AVYVGD QRKRFVV VSYLNHPSFQQLLNRV+EEFGYHHP GGL IPCKEG
Subjt:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG

KAG6571055.1 Auxin-responsive protein SAUR24, partial [Cucurbita argyrosperma subsp. sororia]8.2e-3893.1Show/hide
Query:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG
        MGIRLPSSLLP AKQILKMQLGFVKKQSDVVPRGH AVYVGD QRKRFVV VSYLNHPSFQQLLNRVEEEFGYHHP GGL IPCKEG
Subjt:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG

XP_022944357.1 auxin-responsive protein SAUR24-like [Cucurbita moschata]4.5e-3690.8Show/hide
Query:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG
        MGIRLPSSLL  AKQILKMQLGFVKKQSDVVPRGH AVYVGD QRKRFVV VSYLNHPSFQQLLNR EEEFGYHHP GGL IPCKEG
Subjt:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG

XP_022944358.1 auxin-responsive protein SAUR24-like [Cucurbita moschata]1.9e-42100Show/hide
Query:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG
        MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG
Subjt:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG

XP_022986188.1 auxin-responsive protein SAUR21-like [Cucurbita maxima]5.9e-3689.66Show/hide
Query:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG
        MGIRLPSSLLPT KQILKMQLGFVKKQSDVVPRGH AVYVGD QR+RFVV VSYLNHPSFQQLLNRVEEEFGYHHP GGL I C+EG
Subjt:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG

TrEMBL top hitse value%identityAlignment
A0A6J1CX72 auxin-responsive protein SAUR24-like6.3e-3688.37Show/hide
Query:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE
        MGIRLPSSL+P AKQILKMQLGF KKQSDVVPRGH AVYVGDIQRKRFVV VS+LNHPSFQQLLN+VEEEFG+HHP GGL IPCKE
Subjt:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE

A0A6J1FVH8 auxin-responsive protein SAUR24-like2.2e-3690.8Show/hide
Query:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG
        MGIRLPSSLL  AKQILKMQLGFVKKQSDVVPRGH AVYVGD QRKRFVV VSYLNHPSFQQLLNR EEEFGYHHP GGL IPCKEG
Subjt:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG

A0A6J1FXZ4 auxin-responsive protein SAUR24-like9.1e-43100Show/hide
Query:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG
        MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG
Subjt:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG

A0A6J1JEU7 auxin-responsive protein SAUR24-like1.2e-3488.51Show/hide
Query:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG
        MG+RLPSSLL  AKQI KMQ GFVKKQSD VPRGHCAVYVGDIQRKRFVV VSYLNHPSFQQLLNRV EEFGYHHP GGL IPCKEG
Subjt:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG

A0A6J1JFS6 auxin-responsive protein SAUR21-like2.8e-3689.66Show/hide
Query:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG
        MGIRLPSSLLPT KQILKMQLGFVKKQSDVVPRGH AVYVGD QR+RFVV VSYLNHPSFQQLLNRVEEEFGYHHP GGL I C+EG
Subjt:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEG

SwissProt top hitse value%identityAlignment
P33079 Auxin-induced protein 10A52.4e-1667.86Show/hide
Query:  VPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE
        VP+G+ AVYVGD + +RF + VSYLN PSFQ+LL++ EEEFGY HP+GGL IPCKE
Subjt:  VPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE

P33080 Auxin-induced protein X10A2.4e-1651.16Show/hide
Query:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE
        MG RLP        +   +       +S  VP+G+  VYVGD + +RF++ VSYLN PSFQ LLN+ EEEFGY HP+GGL IPCKE
Subjt:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE

Q41220 Auxin-responsive protein SAUR152.4e-1661.54Show/hide
Query:  VKKQSDVVPRGHCAVYVG--DIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE
        ++++S   PRG  AVYVG  D ++KR+VV VSYLN P FQQLL++ EEEFGY HP+GGL IPC E
Subjt:  VKKQSDVVPRGHCAVYVG--DIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE

Q9FJG0 Auxin-responsive protein SAUR201.2e-1559.32Show/hide
Query:  SDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE
        +   P+G  AVYVG+ Q+KR++V +SYLN PSFQ LL++ EEEFG+ HP+GGL IPC E
Subjt:  SDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE

Q9FK62 Auxin-responsive protein SAUR243.1e-1655.41Show/hide
Query:  AKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE
        AK+IL    G         P+G  AVYVG+ Q+KR++V VSYLN PSFQ LL++ EEEFG+ HP+GGL IPC E
Subjt:  AKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE

Arabidopsis top hitse value%identityAlignment
AT2G21210.1 SAUR-like auxin-responsive protein family2.0e-1851.72Show/hide
Query:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGD-IQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE
        M IR+ S +L ++KQ+LK         +  +P+GH AVYVG+ +Q++RFVV V+YL+HP FQ+LL + EEEFG+ HP+GGL IPC E
Subjt:  MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGD-IQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE

AT4G34790.1 SAUR-like auxin-responsive protein family4.8e-2051.61Show/hide
Query:  LPSSLLPTAKQILKMQL----------GFVKKQSDVVPRGHCAVYVGD-IQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE
        L  S+LP AKQI K Q                 S +VP+GH AVYVG+ +++KRFVV +SYLNHP F++ LNR EEE G+HH +GGL IPC+E
Subjt:  LPSSLLPTAKQILKMQL----------GFVKKQSDVVPRGHCAVYVGD-IQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE

AT4G34800.1 SAUR-like auxin-responsive protein family1.8e-1965.62Show/hide
Query:  KKQSDVVPRGHCAVYVGD--IQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE
        +KQ   VP+GH AVYVG+    +KRFVV +SYLNHPSFQ LL+R EEEFG++HP+GGL IPC+E
Subjt:  KKQSDVVPRGHCAVYVGD--IQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE

AT4G34810.1 SAUR-like auxin-responsive protein family4.1e-1954.32Show/hide
Query:  KQILKM-----QLGFVKKQSDVVPRGHCAVYVG---DIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE
        KQILK+     +       SD VP+GH AVYVG   ++++KRFVV +S+LNHPSF++ L+R EEEFG++HP+GGL IPC+E
Subjt:  KQILKM-----QLGFVKKQSDVVPRGHCAVYVG---DIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE

AT4G38840.1 SAUR-like auxin-responsive protein family1.2e-1853.93Show/hide
Query:  MGIRLPSSLLPTAKQIL---KMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE
        M IR+P  +L ++KQIL   K+        S  VP+G+ AVYVG+   KRFVV VSYL+ PSFQ LL + EEEFG+ HP+GGL IPC E
Subjt:  MGIRLPSSLLPTAKQIL---KMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATTCGTTTGCCATCATCCCTGCTGCCTACTGCCAAGCAAATTCTCAAGATGCAATTGGGTTTTGTCAAGAAGCAGTCAGATGTTGTTCCTAGAGGTCATTGTGC
TGTATATGTGGGAGATATCCAAAGGAAGCGATTTGTGGTTTCTGTTTCATACTTGAACCATCCTTCATTCCAACAACTACTCAACCGAGTAGAAGAAGAGTTTGGTTACC
ATCATCCACTCGGAGGTCTACCAATTCCTTGCAAAGAGGGCAAGAAAGGCATTCCACTCTACAACATTCTAGTATGGGTCAAAATACAATTGAGTCAGAAACAACCAGAA
AAGGTTGTAAAAAATTGCAGCTTGAGCATTGCTGTTCATCCTTCAAGATACTTGCAGTCTAGAAGTGAGATCGATGAAGGCATCTTCTTTGCAAGGAATTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGATTCGTTTGCCATCATCCCTGCTGCCTACTGCCAAGCAAATTCTCAAGATGCAATTGGGTTTTGTCAAGAAGCAGTCAGATGTTGTTCCTAGAGGTCATTGTGC
TGTATATGTGGGAGATATCCAAAGGAAGCGATTTGTGGTTTCTGTTTCATACTTGAACCATCCTTCATTCCAACAACTACTCAACCGAGTAGAAGAAGAGTTTGGTTACC
ATCATCCACTCGGAGGTCTACCAATTCCTTGCAAAGAGGGCAAGAAAGGCATTCCACTCTACAACATTCTAGTATGGGTCAAAATACAATTGAGTCAGAAACAACCAGAA
AAGGTTGTAAAAAATTGCAGCTTGAGCATTGCTGTTCATCCTTCAAGATACTTGCAGTCTAGAAGTGAGATCGATGAAGGCATCTTCTTTGCAAGGAATTGTTAG
Protein sequenceShow/hide protein sequence
MGIRLPSSLLPTAKQILKMQLGFVKKQSDVVPRGHCAVYVGDIQRKRFVVSVSYLNHPSFQQLLNRVEEEFGYHHPLGGLPIPCKEGKKGIPLYNILVWVKIQLSQKQPE
KVVKNCSLSIAVHPSRYLQSRSEIDEGIFFARNC