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CmoCh20G007960 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G007960
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionauxin-responsive protein SAUR24-like
Genome locationCmo_Chr20:3937286..3937579
RNA-Seq ExpressionCmoCh20G007960
SyntenyCmoCh20G007960
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605019.1 Auxin-responsive protein SAUR24, partial [Cucurbita argyrosperma subsp. sororia]6.7e-4493.81Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS
        MGIRLLSLVPHAKQILKMQSG TKSQLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQ+LLS AEEEFGFHHPQG LTIPCKEDAFI+LTSRLQVS
Subjt:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS

XP_022944368.1 auxin-responsive protein SAUR24-like [Cucurbita moschata]8.5e-47100Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS
        MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS
Subjt:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS

XP_022947571.1 auxin-responsive protein SAUR24-like [Cucurbita moschata]6.7e-4493.81Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS
        MGIRLLSLVPHAKQILKMQSG TKSQLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQ+LLS AEEEFGFHHPQG LTIPCKEDAFI+LTSRLQVS
Subjt:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS

XP_023512610.1 auxin-responsive protein SAUR24-like [Cucurbita pepo subsp. pepo]7.2e-4697.94Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS
        MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHP GALTIPC+EDAFINLTSRLQVS
Subjt:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS

XP_023533292.1 auxin-responsive protein SAUR24-like [Cucurbita pepo subsp. pepo]8.8e-4492.78Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS
        MGIRLLSLVPHAKQILKMQSG TKSQLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQ+LLS AEEEFGFHHPQG LTIPCKEDAF++LTSRLQVS
Subjt:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS

TrEMBL top hitse value%identityAlignment
A0A6J1CXV3 auxin-responsive protein SAUR24-like7.3e-4493.81Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS
        MGIRLLSLVPHAKQ+LK+QSG TKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLS AEEEFGFHHPQG LTIPCKEDAFI LTSRLQVS
Subjt:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS

A0A6J1FXZ7 auxin-responsive protein SAUR24-like4.1e-47100Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS
        MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS
Subjt:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS

A0A6J1G6T7 auxin-responsive protein SAUR24-like3.3e-4493.81Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS
        MGIRLLSLVPHAKQILKMQSG TKSQLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQ+LLS AEEEFGFHHPQG LTIPCKEDAFI+LTSRLQVS
Subjt:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS

A0A6J1G6U1 auxin-responsive protein SAUR23-like7.3e-4492.78Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS
        MGIRLLSLVPHAKQILKMQSG TKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQ+LLS AEEEFGFHHPQG LTIPCKEDAF++LTSRL VS
Subjt:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS

A0A6J1KZJ6 auxin-responsive protein SAUR24-like4.3e-4493.81Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS
        MGIRLLSLVPHAKQILKMQSG TKSQLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQ LLS AEEEFGFHHPQG LTIPCKEDAFI+LTSRLQVS
Subjt:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS

SwissProt top hitse value%identityAlignment
Q9FJF6 Auxin-responsive protein SAUR233.1e-2362.65Show/hide
Query:  AKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRL
        AK+IL   +    +    PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS++EEEFGF HP G LTIPC ED FIN+TSRL
Subjt:  AKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRL

Q9FJF7 Auxin-responsive protein SAUR221.4e-2361.9Show/hide
Query:  AKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQ
        AK+IL   +    +    PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS++E+EFGF HP G LTIPC ED FIN+TSRLQ
Subjt:  AKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQ

Q9FJG0 Auxin-responsive protein SAUR208.0e-2465.82Show/hide
Query:  KMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQ
        K+ S  T +    PKG +AVYVGE Q+KR++VPISYLN PSFQ LLS++EEEFGF HP G LTIPC ED FIN+TSR Q
Subjt:  KMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQ

Q9FJG1 Auxin-responsive protein SAUR193.1e-2364.56Show/hide
Query:  KMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQ
        K+ S  T +    PKG +AVYVGE Q+KR++VP+SYL+ PSFQ LLS++EEEFGF HP G LTIPC ED FIN+TSRLQ
Subjt:  KMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQ

Q9FK62 Auxin-responsive protein SAUR241.6e-2464.29Show/hide
Query:  AKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQ
        AK+IL   +G   +    PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS++EEEFGF HP G LTIPC ED FIN+TSRLQ
Subjt:  AKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQ

Arabidopsis top hitse value%identityAlignment
AT2G21210.1 SAUR-like auxin-responsive protein family1.1e-2556.12Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGE-IQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS
        M IR+  ++  +KQ+LK  S  + + + +PKGH+AVYVGE +Q++RFVVP++YL+HP FQ+LL +AEEEFGF HP G LTIPC E  FI+L SRL  S
Subjt:  MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGE-IQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS

AT4G34810.1 SAUR-like auxin-responsive protein family6.7e-2656.19Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGITKSQLD------VPKGHVAVYVG---EIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINL-
        MG+   ++    KQILK+ S   +++        VPKGHVAVYVG   E+++KRFVVPIS+LNHPSF++ LSRAEEEFGF+HP G LTIPC+E+ F++L 
Subjt:  MGIRLLSLVPHAKQILKMQSGITKSQLD------VPKGHVAVYVG---EIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINL-

Query:  TSRLQ
         SRLQ
Subjt:  TSRLQ

AT4G38840.1 SAUR-like auxin-responsive protein family3.0e-2658.76Show/hide
Query:  MGIRLLSLVPHAKQILK----MQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSR
        M IR+  ++  +KQIL+    + S  + S LDVPKG++AVYVGE   KRFVVP+SYL+ PSFQ LL +AEEEFGF HP G LTIPC E+ FI+L SR
Subjt:  MGIRLLSLVPHAKQILK----MQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSR

AT5G18020.1 SAUR-like auxin-responsive protein family5.7e-2565.82Show/hide
Query:  KMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQ
        K+ S  T +    PKG +AVYVGE Q+KR++VPISYLN PSFQ LLS++EEEFGF HP G LTIPC ED FIN+TSR Q
Subjt:  KMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQ

AT5G18080.1 SAUR-like auxin-responsive protein family1.1e-2564.29Show/hide
Query:  AKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQ
        AK+IL   +G   +    PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS++EEEFGF HP G LTIPC ED FIN+TSRLQ
Subjt:  AKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATTCGATTGCTATCCTTGGTTCCTCATGCCAAGCAAATCCTAAAGATGCAGTCAGGTATCACTAAAAGTCAGTTGGATGTTCCAAAAGGTCATGTAGCCGTGTA
TGTGGGAGAGATCCAAAGGAAGAGATTCGTGGTTCCAATATCATACTTGAACCACCCATCATTCCAGCAACTGCTCAGCCGTGCAGAGGAAGAGTTTGGCTTCCATCATC
CGCAGGGCGCTCTAACTATTCCTTGCAAAGAGGATGCCTTTATTAATCTTACTTCAAGATTGCAAGTCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGATTCGATTGCTATCCTTGGTTCCTCATGCCAAGCAAATCCTAAAGATGCAGTCAGGTATCACTAAAAGTCAGTTGGATGTTCCAAAAGGTCATGTAGCCGTGTA
TGTGGGAGAGATCCAAAGGAAGAGATTCGTGGTTCCAATATCATACTTGAACCACCCATCATTCCAGCAACTGCTCAGCCGTGCAGAGGAAGAGTTTGGCTTCCATCATC
CGCAGGGCGCTCTAACTATTCCTTGCAAAGAGGATGCCTTTATTAATCTTACTTCAAGATTGCAAGTCTCTTGA
Protein sequenceShow/hide protein sequence
MGIRLLSLVPHAKQILKMQSGITKSQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSRAEEEFGFHHPQGALTIPCKEDAFINLTSRLQVS