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CmoCh20G008020 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G008020
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSAUR-like auxin-responsive protein family
Genome locationCmo_Chr20:3954200..3958491
RNA-Seq ExpressionCmoCh20G008020
SyntenyCmoCh20G008020
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605033.1 hypothetical protein SDJN03_02350, partial [Cucurbita argyrosperma subsp. sororia]1.1e-1686Show/hide
Query:  FVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN
        FVIPIAYLN+PFFKDLLS+ EEEFGYNHPMGGLTIPCS D FI L+SHLN
Subjt:  FVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN

KAG7010878.1 hypothetical protein SDJN02_27676, partial [Cucurbita argyrosperma subsp. argyrosperma]7.2e-2755.81Show/hide
Query:  MMNPLVFCTDTLVDRCLILAREGKYVTPVNYIEIKFRYLDWMWLNLLWASAIPDG---------------------------------------------
        M + +VFCTDTLVDRCLILAREGKYVTPVNYIEIKFRYLDWMWLNLLWAS IPDG                                             
Subjt:  MMNPLVFCTDTLVDRCLILAREGKYVTPVNYIEIKFRYLDWMWLNLLWASAIPDG---------------------------------------------

Query:  -------SALWDSNSCTDIRINKGLAAKS
               SALWDSNSCTDIRINKGLAAKS
Subjt:  -------SALWDSNSCTDIRINKGLAAKS

KGN61865.1 hypothetical protein Csa_006212 [Cucumis sativus]2.0e-1672.58Show/hide
Query:  CSLCRREPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN
        C++   E ++  FVIPIAYLN PFFKDLLSQ  EEFGYNHPMGGLTIPCS DTF+ LIS LN
Subjt:  CSLCRREPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN

KGN61867.1 hypothetical protein Csa_005975 [Cucumis sativus]1.0e-1774.19Show/hide
Query:  CSLCRREPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN
        C++   E +   FVIPI+YLNRPFFKDLL Q EEEFGYNHP GGLTIPCS DTFIGLISHL+
Subjt:  CSLCRREPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN

XP_038902470.1 auxin-induced protein 15A-like [Benincasa hispida]3.0e-1772.58Show/hide
Query:  CSLCRREPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN
        C++   E ++  FVIP+AYLN PFFKDLLSQ EEEFGYNHPMGGLTIPCS DTF+ LIS LN
Subjt:  CSLCRREPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN

TrEMBL top hitse value%identityAlignment
A0A0A0LIY4 SAUR family protein9.5e-1772.58Show/hide
Query:  CSLCRREPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN
        C++   E ++  FVIPIAYLN PFFKDLLSQ  EEFGYNHPMGGLTIPCS DTF+ LIS LN
Subjt:  CSLCRREPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN

A0A0A0LM55 Uncharacterized protein5.0e-1874.19Show/hide
Query:  CSLCRREPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN
        C++   E +   FVIPI+YLNRPFFKDLL Q EEEFGYNHP GGLTIPCS DTFIGLISHL+
Subjt:  CSLCRREPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN

A0A1S3C683 auxin-responsive protein SAUR21-like1.2e-1672.58Show/hide
Query:  CSLCRREPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN
        C++   E ++  FVIPIAYLN PFFKDLLSQ  EEFGYNHPMGGLTIPCS DTF+ LIS LN
Subjt:  CSLCRREPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN

A0A5D3BN78 Auxin-responsive protein SAUR21-like1.2e-1672.58Show/hide
Query:  CSLCRREPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN
        C++   E ++  FVIPIAYLN PFFKDLLSQ  EEFGYNHPMGGLTIPCS DTF+ LIS LN
Subjt:  CSLCRREPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN

A0A6J1CXQ4 auxin-responsive protein SAUR24-like1.2e-1666.67Show/hide
Query:  QRLLCSLCRREPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN
        +R  C++   E ++  FVIP+AYLN P F+DLLSQ EEE+GYNHPMGGLTIPCS DTFI LIS LN
Subjt:  QRLLCSLCRREPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN

SwissProt top hitse value%identityAlignment
P32295 Indole-3-acetic acid-induced protein ARG77.2e-1468Show/hide
Query:  FVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN
        FVIP+++LN+P F+DLLSQ EEEFGY+HPMGGLTIPCS D F  + S L+
Subjt:  FVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN

P33079 Auxin-induced protein 10A51.9e-1464Show/hide
Query:  FVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN
        F IP++YLN P F++LLSQ EEEFGY+HPMGGLTIPC  + F+ + +HLN
Subjt:  FVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN

P33080 Auxin-induced protein X10A2.3e-1568Show/hide
Query:  FVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN
        F+IP++YLN+P F+DLL+Q EEEFGY+HPMGGLTIPC  D F+ + SHLN
Subjt:  FVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN

P33081 Auxin-induced protein 15A8.6e-1572Show/hide
Query:  FVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN
        FVIP++YLN+P F+DLLSQ EEEFGY+HPMGGLTIPCS D F  + S LN
Subjt:  FVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN

P33083 Auxin-induced protein 6B1.9e-1470Show/hide
Query:  FVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN
        FVIP++YLN+P F+DLLSQ EEEFGY+HP GGLTIPCS D F  + S LN
Subjt:  FVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN

Arabidopsis top hitse value%identityAlignment
AT3G03850.1 SAUR-like auxin-responsive protein family2.3e-1568.09Show/hide
Query:  IPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHL
        +P++YLN+P F+DLLS+ EEEFG++HPMGGLTIPC VDTFI + S L
Subjt:  IPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHL

AT4G34800.1 SAUR-like auxin-responsive protein family6.7e-1565.96Show/hide
Query:  FVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLIS
        FV+PI+YLN P F+ LLS+ EEEFG+NHP+GGLTIPC  +TF+GL++
Subjt:  FVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLIS

AT4G34810.1 SAUR-like auxin-responsive protein family1.5e-1460.38Show/hide
Query:  EPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLIS
        E E+  FV+PI++LN P FK+ LS+ EEEFG+NHPMGGLTIPC  + F+ LI+
Subjt:  EPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLIS

AT4G38825.1 SAUR-like auxin-responsive protein family1.5e-1460Show/hide
Query:  FVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN
        +++P++YLN+P F+ LLS++E+EFG++HPMGGLTIPC VDTFI + S L+
Subjt:  FVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN

AT5G18060.1 SAUR-like auxin-responsive protein family5.1e-1544.74Show/hide
Query:  SNKPRIISCPQRLLCSLCRREPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN
        S     +S P +   ++   E ++  +++P++YLN+P F+ LLS++EEEFG++HPMGGLTIPC  DTFI + S L+
Subjt:  SNKPRIISCPQRLLCSLCRREPEEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAATCCATTAGTTTTCTGTACCGATACATTGGTGGATCGATGTCTGATTCTAGCAAGAGAGGGAAAATATGTTACTCCGGTGAACTACATTGAAATTAAG
TTTAGATATCTTGATTGGATGTGGCTGAACCTACTTTGGGCATCCGCCATACCAGATGGTTCAGCTTTGTGGGACTCCAACAGCTGTACTGATATACGTATCAAC
AAAGGCTTAGCTGCCAAATCCGCTAGGACTTTCTTCTCTAGCAACAAACCAAGAATCATCAGTTGTCCGCAAAGGTTATTGTGCAGTTTATGTCGGAGAGAACCA
GAGGAAGTGATATTTGTGATTCCAATAGCTTACTTGAATCGACCATTTTTCAAAGACTTGCTCAGTCAAACTGAAGAAGAATTTGGTTACAATCACCCTATGGGA
GGTCTCACCATTCCCTGCAGTGTTGATACATTCATTGGTCTCATCTCTCATTTGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGAATCCATTAGTTTTCTGTACCGATACATTGGTGGATCGATGTCTGATTCTAGCAAGAGAGGGAAAATATGTTACTCCGGTGAACTACATTGAAATTAAG
TTTAGATATCTTGATTGGATGTGGCTGAACCTACTTTGGGCATCCGCCATACCAGATGGTTCAGCTTTGTGGGACTCCAACAGCTGTACTGATATACGTATCAAC
AAAGGCTTAGCTGCCAAATCCGCTAGGACTTTCTTCTCTAGCAACAAACCAAGAATCATCAGTTGTCCGCAAAGGTTATTGTGCAGTTTATGTCGGAGAGAACCA
GAGGAAGTGATATTTGTGATTCCAATAGCTTACTTGAATCGACCATTTTTCAAAGACTTGCTCAGTCAAACTGAAGAAGAATTTGGTTACAATCACCCTATGGGA
GGTCTCACCATTCCCTGCAGTGTTGATACATTCATTGGTCTCATCTCTCATTTGAATTAG
Protein sequenceShow/hide protein sequence
MMNPLVFCTDTLVDRCLILAREGKYVTPVNYIEIKFRYLDWMWLNLLWASAIPDGSALWDSNSCTDIRINKGLAAKSARTFFSSNKPRIISCPQRLLCSLCRREP
EEVIFVIPIAYLNRPFFKDLLSQTEEEFGYNHPMGGLTIPCSVDTFIGLISHLN