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CmoCh20G008090 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G008090
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
Genome locationCmo_Chr20:3999264..4000898
RNA-Seq ExpressionCmoCh20G008090
SyntenyCmoCh20G008090
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0043024 - ribosomal small subunit binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605037.1 putative ribosome-binding factor A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.2e-0566.67Show/hide
Query:  DRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITYTHLC
        DR KD+K + +DED EQSELSDAP+DDRD + DDADEDI Y  +C
Subjt:  DRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITYTHLC

XP_004151338.1 probable ribosome-binding factor A, chloroplastic [Cucumis sativus]5.5e-0578.05Show/hide
Query:  DRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITY
        DR KDKKKDT DEDF+Q ELSDA +DDRD K DDADEDI Y
Subjt:  DRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITY

XP_008457619.1 PREDICTED: probable ribosome-binding factor A, chloroplastic [Cucumis melo]1.2e-0475.61Show/hide
Query:  DRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITY
        DR KDKKKDT DEDF++ ELSDA +DDRD K DDADEDI Y
Subjt:  DRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITY

XP_022948118.1 probable ribosome-binding factor A, chloroplastic [Cucurbita moschata]6.0e-0470.73Show/hide
Query:  DRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITY
        DR KD+K + +DED EQSELSDAP+DDRD + DDADEDI Y
Subjt:  DRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITY

XP_038900542.1 probable ribosome-binding factor A, chloroplastic [Benincasa hispida]5.5e-0578.05Show/hide
Query:  DRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITY
        DR KDKKKD +DEDFE SELSD  EDDRD K DDADEDI Y
Subjt:  DRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITY

TrEMBL top hitse value%identityAlignment
A0A0A0LIX7 Uncharacterized protein2.6e-0578.05Show/hide
Query:  DRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITY
        DR KDKKKDT DEDF+Q ELSDA +DDRD K DDADEDI Y
Subjt:  DRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITY

A0A1S4E1P3 probable ribosome-binding factor A, chloroplastic5.9e-0575.61Show/hide
Query:  DRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITY
        DR KDKKKDT DEDF++ ELSDA +DDRD K DDADEDI Y
Subjt:  DRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITY

A0A5A7TVW4 Putative ribosome-binding factor A5.9e-0575.61Show/hide
Query:  DRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITY
        DR KDKKKDT DEDF++ ELSDA +DDRD K DDADEDI Y
Subjt:  DRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITY

A0A6J1G8H2 probable ribosome-binding factor A, chloroplastic2.9e-0470.73Show/hide
Query:  DRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITY
        DR KD+K + +DED EQSELSDAP+DDRD + DDADEDI Y
Subjt:  DRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATGTTTAGTGGTTTGCTCTTTTTGCTTGACTGTAGTAATTTCTATATTGGATCGGATCGGCAGAAGGACAAAAAGAAGGATACTAACGATGAAGACTTCGA
GCAATCGGAACTGTCCGATGCTCCTGAAGATGACAGGGACTGCAAAGCTGATGATGCTGATGAAGACATTACATATACTCATCTGTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATGTTTAGTGGTTTGCTCTTTTTGCTTGACTGTAGTAATTTCTATATTGGATCGGATCGGCAGAAGGACAAAAAGAAGGATACTAACGATGAAGACTTCGA
GCAATCGGAACTGTCCGATGCTCCTGAAGATGACAGGGACTGCAAAGCTGATGATGCTGATGAAGACATTACATATACTCATCTGTGCTGAGGCATCGGTTCACTTTCGC
AAGAGCAAGAAGGCACCAAAATATCAGAATGATGCTGCTCAAAACATTCTCCACTATACCATCCAGAATCTATGATCATCATCAAAGGTAATATACAGAAATTGCCTATT
CTACCCGAAATTAAAATATCGATATCAACAAAAATGTCCCGACAGATACTCGTGTTAGTATTTGTCATGATTTAGATGTCTTATCTCCTCGATCTCGGTATTGAATTGCG
TTCGATTCACAAAAGGGTGTTTGTTGAGATGAAATATTGTTCACATCATTGCAACTTGTTTTTTCTTTTTCTTTTTCTTTTTTTTTTTTTGGTGGAAAAGAGAAGATCCT
TTTAAATTATTCCATATAGTTTTCTTCCATTGATTAAATGTCGAATTAAAAATAAATAATCTGTCCAATAAATATCAA
Protein sequenceShow/hide protein sequence
MTEMFSGLLFLLDCSNFYIGSDRQKDKKKDTNDEDFEQSELSDAPEDDRDCKADDADEDITYTHLC