CuGenDBv2

Gene ID	CmoCh20G008390
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	protein CASPARIAN STRIP INTEGRITY FACTOR 1-like
Genome location	Cmo_Chr20:4199239..4201656
RNA-Seq Expression	CmoCh20G008390
Synteny	CmoCh20G008390
Gene Ontology terms	GO:0010039 - response to iron ion (biological process) GO:0010447 - response to acidic pH (biological process) GO:0055072 - iron ion homeostasis (biological process) GO:2000067 - regulation of root morphogenesis (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0048226 - Casparian strip (cellular component)
InterPro domains	IPR038974 - Protein Casparian strip integrity factor 1/2

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7010912.1 Protein CASPARIAN STRIP INTEGRITY FACTOR 1, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.8e-27

86.49

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Query:  LLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        L  T+  + IC+  RPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
Subjt:  LLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN

XP_022944149.1 protein CASPARIAN STRIP INTEGRITY FACTOR 1-like [Cucurbita moschata]

2.2e-41

100

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Query:  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
Subjt:  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN

XP_022986650.1 protein CASPARIAN STRIP INTEGRITY FACTOR 1-like [Cucurbita maxima]

1.1e-37

95.51

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Query:  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        MFFKYKLGF V FF LL TSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
Subjt:  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN

XP_023511856.1 protein CASPARIAN STRIP INTEGRITY FACTOR 1-like [Cucurbita pepo subsp. pepo]

7.3e-37

92.13

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Query:  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        MFFKYKLGFV    FLL +SFFSTICIAG PSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
Subjt:  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN

XP_038902215.1 protein CASPARIAN STRIP INTEGRITY FACTOR 1-like [Benincasa hispida]

1.4e-27

78.02

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Query:  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVV--NGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        MF KYKL F  +F  LL TSF STICIAGRPSKLV EVV   GVVHE  KR TR EMED+HERLLRVNTKDYGRYDP+P+FVKPPFKLIPN
Subjt:  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVV--NGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJ22 Uncharacterized protein

2.8e-26

77.17

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Query:  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVV--NGVVHEGRKRTTRDEMED-VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        MF KYKL F  +F  LL TSF STICIAGRPSKLV EVV   GVVHE  KR TR EME+ +HERLLRVNTKDYGRYDPSP+FVKPPFKLIPN
Subjt:  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVV--NGVVHEGRKRTTRDEMED-VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN

A0A1S3CEV9 uncharacterized protein LOC103499698

1.8e-25

76.34

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Query:  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVV--NGVVHEGRKRTTR-DEMED-VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        MF KYKL F  +F  LL TSF S+ICIAGRPSKLV EVV   GVVHE  KR TR DEMED +HERLLRVNTKDYGRYDP+P+FVKPPFKLIPN
Subjt:  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVV--NGVVHEGRKRTTR-DEMED-VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN

A0A5A7TUS0 Uncharacterized protein

1.8e-25

76.34

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Query:  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVV--NGVVHEGRKRTTR-DEMED-VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        MF KYKL F  +F  LL TSF S+ICIAGRPSKLV EVV   GVVHE  KR TR DEMED +HERLLRVNTKDYGRYDP+P+FVKPPFKLIPN
Subjt:  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVV--NGVVHEGRKRTTR-DEMED-VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN

A0A6J1FW62 protein CASPARIAN STRIP INTEGRITY FACTOR 1-like

1.1e-41

100

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Query:  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
Subjt:  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN

A0A6J1JEM0 protein CASPARIAN STRIP INTEGRITY FACTOR 1-like

5.5e-38

95.51

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Query:  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        MFFKYKLGF V FF LL TSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
Subjt:  MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN

SwissProt top hits

e value

%identity

Alignment

O65684 Protein CASPARIAN STRIP INTEGRITY FACTOR 2

6.1e-10

41.76

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Query:  KLGFVVVFFFLLLTSFFSTICIAGRPSKLVH-------EVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        KLGF++   FLL+++    +C AGR S L++       EVV   +HE             HER+LR+N++DYG   P P  V+PPFKLIPN
Subjt:  KLGFVVVFFFLLLTSFFSTICIAGRPSKLVH-------EVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN

Q84MD2 Protein CASPARIAN STRIP INTEGRITY FACTOR 1

1.2e-10

44.32

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Query:  KLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMED----VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        KLGF+    F+++++   ++  AGRPS  VH+ +N           R+EM +     HERLLR+NTKDYG   PSP   +PPFKLIPN
Subjt:  KLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMED----VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN

Arabidopsis top hits

e value

%identity

Alignment

AT2G16385.1 unknown protein

8.7e-12

44.32

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Query:  KLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMED----VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        KLGF+    F+++++   ++  AGRPS  VH+ +N           R+EM +     HERLLR+NTKDYG   PSP   +PPFKLIPN
Subjt:  KLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMED----VHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN

AT4G34600.1 unknown protein

4.3e-11

41.76

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Query:  KLGFVVVFFFLLLTSFFSTICIAGRPSKLVH-------EVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN
        KLGF++   FLL+++    +C AGR S L++       EVV   +HE             HER+LR+N++DYG   P P  V+PPFKLIPN
Subjt:  KLGFVVVFFFLLLTSFFSTICIAGRPSKLVH-------EVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN

Sequences

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CDS sequence

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ATGTTTTTCAAGTATAAGCTCGGCTTCGTCGTCGTCTTCTTCTTCCTCCTCTTGACCTCGTTTTTCTCCACTATTTGCATTGCAGGTCGACCTTCTAAGCTGGTTCATGA
GGTTGTTAATGGTGTTGTGCATGAGGGTCGAAAGAGGACGACACGAGATGAAATGGAGGACGTCCATGAAAGGCTTTTGAGGGTAAACACCAAAGACTATGGAAGATATG
ATCCATCTCCATCTTTTGTGAAGCCTCCTTTCAAGCTCATCCCCAACTAA

mRNA sequence

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TTGGTTCTATGCTCTTTGGAAAAACAAGAACAAGAAGAAAGACCATCATTAAGGTTGTTTCTATCATACTTGGGAATCATGTTTTTCAAGTATAAGCTCGGCTTCGTCGT
CGTCTTCTTCTTCCTCCTCTTGACCTCGTTTTTCTCCACTATTTGCATTGCAGGTCGACCTTCTAAGCTGGTTCATGAGGTTGTTAATGGTGTTGTGCATGAGGGTCGAA
AGAGGACGACACGAGATGAAATGGAGGACGTCCATGAAAGGCTTTTGAGGGTAAACACCAAAGACTATGGAAGATATGATCCATCTCCATCTTTTGTGAAGCCTCCTTTC
AAGCTCATCCCCAACTAAGAGGCAAAAGAATCCATCACCAATATGGACTCTTTTACCACTACCTTAGCTTATAAATAAATAATCAGAAATATCATGTGTTTCATAGTATA
TGTATAATATATATAGTATATAATATGGTCACAGACTTAGATATATATATATATATATGTATGAATATAAAGCTTTAGTAATGTTTTGATGTATACATTTGGTGTATGTT
TCGATGTACTTTAATATACTATTTTTAATACTATTTTGGTCTTGATTTCGC

Protein sequence

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MFFKYKLGFVVVFFFLLLTSFFSTICIAGRPSKLVHEVVNGVVHEGRKRTTRDEMEDVHERLLRVNTKDYGRYDPSPSFVKPPFKLIPN

CmoCh20G008390 (gene) of Cucurbita moschata (Rifu) v1 genome