; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh20G008590 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G008590
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor RADIALIS-like
Genome locationCmo_Chr20:4328662..4328973
RNA-Seq ExpressionCmoCh20G008590
SyntenyCmoCh20G008590
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571113.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]5.6e-4996.12Show/hide
Query:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQRYHFK
        MASM+SSH SSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTAS SGTSNANINDQEQRYHFK
Subjt:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQRYHFK

Query:  IHS
        I+S
Subjt:  IHS

KAG6571117.1 Protein RADIALIS-like 2, partial [Cucurbita argyrosperma subsp. sororia]6.5e-4596.88Show/hide
Query:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR
        MASM+SSH SSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTAS SGTSNANINDQEQR
Subjt:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR

XP_022944318.1 protein RADIALIS-like 2 [Cucurbita moschata]1.5e-46100Show/hide
Query:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR
        MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR
Subjt:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR

XP_022986646.1 protein RADIALIS-like 2 [Cucurbita maxima]3.2e-4494.79Show/hide
Query:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR
        MASM+SSH SSSWTPK+NKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIE GHVPFPNYSSTASA+GTSNANINDQEQR
Subjt:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR

XP_023513343.1 protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo]5.5e-4494.79Show/hide
Query:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR
        MASM+SSH SSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASAS TSNAN++DQEQR
Subjt:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR

TrEMBL top hitse value%identityAlignment
A0A0A0LL58 MYB transcription factor MYB1424.5e-3679.61Show/hide
Query:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQRY-HF
        MAS++SS  SSSWTP QNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVK HFD LVEDVKHIESG VPFP Y+S++S+  TSNANI DQEQR  + 
Subjt:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQRY-HF

Query:  KIH
        K+H
Subjt:  KIH

A0A1S3CDK8 protein RADIALIS-like 27.2e-3473.64Show/hide
Query:  MASMASSHR---SSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASG----TSNANINDQ
        MAS++SS     SSSWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD LVEDVKHIESG VPFP Y+S++S+S     +SNANI DQ
Subjt:  MASMASSHR---SSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASG----TSNANINDQ

Query:  EQRY-HFKIH
        EQR  + K+H
Subjt:  EQRY-HFKIH

A0A6J1CYR5 protein RADIALIS-like 21.5e-3171.84Show/hide
Query:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQRY-HF
        MA+M+S   S SWTP QNKAFERALAVFDKDTPDRW NVA AV GGKT DEVK HFDLLVEDVKHIESG +PFPNY  TA+ +G+SN N+ND+E+R  + 
Subjt:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQRY-HF

Query:  KIH
        K+H
Subjt:  KIH

A0A6J1FXX9 protein RADIALIS-like 27.4e-47100Show/hide
Query:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR
        MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR
Subjt:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR

A0A6J1JBS7 protein RADIALIS-like 21.6e-4494.79Show/hide
Query:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR
        MASM+SSH SSSWTPK+NKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIE GHVPFPNYSSTASA+GTSNANINDQEQR
Subjt:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 16.5e-2456.84Show/hide
Query:  ASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR
        +S  SS  S SWT KQNKAFE+ALA +D+DTP+RW NVAK V GGKT +EVK H++LLV+D+  IE+GHVPFPNY    ++ G +N  ++ +E+R
Subjt:  ASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR

Q1A173 Protein RADIALIS-like 68.0e-2261.05Show/hide
Query:  MASSHRS--SSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR
        MAS+ RS  S WT  QNK FERALAV+DKDTPDRW NVAKAV GGKT +EVK H+D+LVED+ +IE+G VP PNY +  S    ++ +IND + R
Subjt:  MASSHRS--SSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR

Q58FS3 Transcription factor RADIALIS5.5e-2357.73Show/hide
Query:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQRY
        MAS   S R   W+ K+NKAFERALAV+DKDTPDRW NVA+AV  G+TP+EVK H+++LVED+K+IESG VPFPNY        T+  N+   E+R+
Subjt:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQRY

Q8GW75 Protein RADIALIS-like 57.5e-2057.29Show/hide
Query:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR
        MAS +S   SSSWT KQNK FERALAV+DKDTPDRW NVAKAV G K+ +EVK H+D+LVED+ +IE   VP P Y +     G+ +  I+D + R
Subjt:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR

Q9SIJ5 Protein RADIALIS-like 27.7e-2563.04Show/hide
Query:  SSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSN-ANINDQEQR
        SS+ S SWT KQNKAFERALAV+D+DTPDRW NVA+AV GGKTP+E K  +DLLV D++ IE+GHVPFP+Y +T   +G SN   + D+E+R
Subjt:  SSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSN-ANINDQEQR

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 55.3e-2157.29Show/hide
Query:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR
        MAS +S   SSSWT KQNK FERALAV+DKDTPDRW NVAKAV G K+ +EVK H+D+LVED+ +IE   VP P Y +     G+ +  I+D + R
Subjt:  MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR

AT1G75250.1 RAD-like 68.8e-2461.46Show/hide
Query:  MASSHRS--SSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQRY
        MAS+ RS  S WT  QNK FERALAV+DKDTPDRW NVAKAV GGKT +EVK H+D+LVED+ +IE+G VP PNY +  S    ++ +IND + RY
Subjt:  MASSHRS--SSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQRY

AT1G75250.2 RAD-like 65.7e-2361.05Show/hide
Query:  MASSHRS--SSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR
        MAS+ RS  S WT  QNK FERALAV+DKDTPDRW NVAKAV GGKT +EVK H+D+LVED+ +IE+G VP PNY +  S    ++ +IND + R
Subjt:  MASSHRS--SSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR

AT2G21650.1 Homeodomain-like superfamily protein5.5e-2663.04Show/hide
Query:  SSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSN-ANINDQEQR
        SS+ S SWT KQNKAFERALAV+D+DTPDRW NVA+AV GGKTP+E K  +DLLV D++ IE+GHVPFP+Y +T   +G SN   + D+E+R
Subjt:  SSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSN-ANINDQEQR

AT4G39250.1 RAD-like 14.6e-2556.84Show/hide
Query:  ASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR
        +S  SS  S SWT KQNKAFE+ALA +D+DTP+RW NVAK V GGKT +EVK H++LLV+D+  IE+GHVPFPNY    ++ G +N  ++ +E+R
Subjt:  ASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATGGCCTCCTCTCATCGCTCTTCCTCTTGGACTCCCAAGCAAAACAAAGCCTTTGAGAGGGCCTTGGCTGTCTTTGACAAGGACACTCCCGATCGCTGGCT
CAATGTCGCCAAGGCCGTCGGCGGAGGCAAGACCCCCGACGAGGTCAAGACCCATTTCGACCTTCTCGTCGAGGATGTCAAACACATTGAATCTGGCCATGTACCATTCC
CTAATTATTCCTCTACTGCTTCTGCCTCCGGAACATCCAATGCCAACATCAATGATCAAGAACAAAGGTATCACTTCAAAATACACTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCATGGCCTCCTCTCATCGCTCTTCCTCTTGGACTCCCAAGCAAAACAAAGCCTTTGAGAGGGCCTTGGCTGTCTTTGACAAGGACACTCCCGATCGCTGGCT
CAATGTCGCCAAGGCCGTCGGCGGAGGCAAGACCCCCGACGAGGTCAAGACCCATTTCGACCTTCTCGTCGAGGATGTCAAACACATTGAATCTGGCCATGTACCATTCC
CTAATTATTCCTCTACTGCTTCTGCCTCCGGAACATCCAATGCCAACATCAATGATCAAGAACAAAGGTATCACTTCAAAATACACTCTTAA
Protein sequenceShow/hide protein sequence
MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVKHIESGHVPFPNYSSTASASGTSNANINDQEQRYHFKIHS