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CmoCh20G009480 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G009480
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA damage-repair/toleration protein DRT100-like
Genome locationCmo_Chr20:5039295..5039663
RNA-Seq ExpressionCmoCh20G009480
SyntenyCmoCh20G009480
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR013210 - Leucine-rich repeat-containing N-terminal, plant-type
IPR032675 - Leucine-rich repeat domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570381.1 DNA damage-repair/toleration protein, partial [Cucurbita argyrosperma subsp. sororia]1.2e-50100Show/hide
Query:  MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
        MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
Subjt:  MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA

KAG7010257.1 DNA damage-repair/toleration protein DRT-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-50100Show/hide
Query:  MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
        MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
Subjt:  MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA

XP_022944117.1 DNA damage-repair/toleration protein DRT100-like [Cucurbita moschata]1.2e-50100Show/hide
Query:  MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
        MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
Subjt:  MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA

XP_022986224.1 DNA damage-repair/toleration protein DRT100-like [Cucurbita maxima]6.0e-5099Show/hide
Query:  MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
        MRTAVRCL ILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
Subjt:  MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA

XP_023512290.1 DNA damage-repair/toleration protein DRT100-like [Cucurbita pepo subsp. pepo]1.2e-50100Show/hide
Query:  MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
        MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
Subjt:  MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA

TrEMBL top hitse value%identityAlignment
A0A5A7TIA9 DNA-damage-repair/toleration protein DRT100-like protein2.6e-4693.81Show/hide
Query:  TAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISP
        TAVRCLSILLILAVSSAVHACPPSERAALLAFRAAL EPYLGIFNSWTGDDCCNRW+GISCD VTHRVADINLRGE+EDPIFERAHRTG+MTG+ISP
Subjt:  TAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISP

A0A6J1FUX0 DNA damage-repair/toleration protein DRT100-like5.9e-51100Show/hide
Query:  MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
        MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
Subjt:  MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA

A0A6J1H2L3 DNA damage-repair/toleration protein DRT100-like2.0e-4690Show/hide
Query:  MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
        MRT V CL+ILL+LAV SAVH CPPSERAALLAFRAAL+EPYLGIFNSWTGDDCCNRWYG+SCD VTHRVADINLRGESEDPIFERAHRTGFMTG+ISPA
Subjt:  MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA

A0A6J1JFH2 DNA damage-repair/toleration protein DRT100-like2.9e-5099Show/hide
Query:  MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
        MRTAVRCL ILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
Subjt:  MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA

A0A6J1K361 DNA damage-repair/toleration protein DRT100-like2.6e-4690Show/hide
Query:  MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
        MRT V CL+ILL+LAV SAVH CPPSERAALLAFRAAL+EPYLGIFNSWTGDDCCNRWYG+SCD VTHRVADINLRGESEDPIFERAHRTGFMTG+ISPA
Subjt:  MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA

SwissProt top hitse value%identityAlignment
A7PW81 Polygalacturonase inhibitor4.7e-0532.48Show/hide
Query:  SILLILAVS----SAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADI-----NLRGESED-----PIFERA--HRTGF
        S+LL+L  +    S    C P ++  LL  + AL  PY  I  SW  +  C  WY + CD  THR+  +      L G+  D     P  E     +   
Subjt:  SILLILAVS----SAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADI-----NLRGESED-----PIFERA--HRTGF

Query:  MTGHISPA-XKEKSLKL
        +TG I PA  K K LK+
Subjt:  MTGHISPA-XKEKSLKL

Q00874 DNA damage-repair/toleration protein DRT1005.0e-2353.19Show/hide
Query:  LSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWT-GDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
        L  ++ ++V S V  C P ++ AL AF+++L EP LGIFN+W+   DCC  WYGISCD  + RV DI+LRGESED IF++A R+G+M+G I PA
Subjt:  LSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWT-GDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA

Q6JN46 Receptor-like protein EIX23.1e-0433.33Show/hide
Query:  CPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPAXKE
        C   ER ALL F+  L + + G  ++W  ++ C  W GI CD  T  V  ++L  E   P    A     +TG +SP+  E
Subjt:  CPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPAXKE

Arabidopsis top hitse value%identityAlignment
AT2G34930.1 disease resistance family protein / LRR family protein1.0e-1042.86Show/hide
Query:  SSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
        S+A   C  +ER ALL FRAAL +    +F SW+G DCCN W G+ CD+ T  V  I+LR  S+D +    ++ G + G I P+
Subjt:  SSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA

AT3G12610.1 Leucine-rich repeat (LRR) family protein3.6e-2453.19Show/hide
Query:  LSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWT-GDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
        L  ++ ++V S V  C P ++ AL AF+++L EP LGIFN+W+   DCC  WYGISCD  + RV DI+LRGESED IF++A R+G+M+G I PA
Subjt:  LSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWT-GDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA

AT3G20820.1 Leucine-rich repeat (LRR) family protein1.3e-3976.6Show/hide
Query:  ILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPAXKE
        +LL+L + S+   CPPS+R ALLAFR+AL EPYLGIFNSWTG DCC+ WYGISCDS+THRVADINLRGESEDPIFERAHRTG+MTGHIS +  E
Subjt:  ILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPAXKE

AT5G12940.1 Leucine-rich repeat (LRR) family protein1.5e-3060.87Show/hide
Query:  SILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
        ++++ L +S+ VH+C PS+RAALL FRA L EPY+G+FN+W G DCC  WYG+SCD  T RVA I LRGESEDP+F++A R+G MTG ISP+
Subjt:  SILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA

AT5G23400.1 Leucine-rich repeat (LRR) family protein3.2e-0934.12Show/hide
Query:  SSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCN-RWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA
        SS    C   +RA LL F++++ E   G+ +SW G DCCN  W G+ C+  T +V  + L+    +P       T +M G +SP+
Subjt:  SSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCN-RWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCACCGCCGTTCGGTGCTTATCCATTTTACTCATTCTCGCCGTTTCCTCCGCCGTTCATGCCTGCCCACCGTCCGAACGGGCAGCTCTTCTGGCTTTCAGAGCTGC
CCTTCAGGAGCCCTATTTAGGAATCTTCAATTCCTGGACCGGAGATGACTGTTGCAACCGGTGGTACGGCATTAGCTGTGACTCGGTCACCCACCGGGTTGCCGATATTA
ACCTCCGGGGCGAATCTGAGGACCCTATTTTCGAACGGGCTCACCGTACTGGTTTTATGACCGGCCATATTTCTCCTGCCANTAAAGAGAAATCTCTAAAACTTAAAAAA
AAAAAATACAAAATACAAAATACAATCAAACCTCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGCACCGCCGTTCGGTGCTTATCCATTTTACTCATTCTCGCCGTTTCCTCCGCCGTTCATGCCTGCCCACCGTCCGAACGGGCAGCTCTTCTGGCTTTCAGAGCTGC
CCTTCAGGAGCCCTATTTAGGAATCTTCAATTCCTGGACCGGAGATGACTGTTGCAACCGGTGGTACGGCATTAGCTGTGACTCGGTCACCCACCGGGTTGCCGATATTA
ACCTCCGGGGCGAATCTGAGGACCCTATTTTCGAACGGGCTCACCGTACTGGTTTTATGACCGGCCATATTTCTCCTGCCANTAAAGAGAAATCTCTAAAACTTAAAAAA
AAAAAATACAAAATACAAAATACAATCAAACCTCCTTAA
Protein sequenceShow/hide protein sequence
MRTAVRCLSILLILAVSSAVHACPPSERAALLAFRAALQEPYLGIFNSWTGDDCCNRWYGISCDSVTHRVADINLRGESEDPIFERAHRTGFMTGHISPAXKEKSLKLKK
KKYKIQNTIKPP