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CmoCh20G009560 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G009560
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionShikimate dehydrogenase
Genome locationCmo_Chr20:5202855..5204285
RNA-Seq ExpressionCmoCh20G009560
SyntenyCmoCh20G009560
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER56690.1 shikimate dehydrogenase [Striga asiatica]2.5e-0454.55Show/hide
Query:  NLSALNSIASSHTSSFLAISATARCTVVFSGTTNLPSNTTSSVTVCGSAKCPGGCLLKVSIITAFR
        NLS LNS  SS T     ISAT + T  F GT   P+N+TS VT+CG  K PGGCLL+ S  TA R
Subjt:  NLSALNSIASSHTSSFLAISATARCTVVFSGTTNLPSNTTSSVTVCGSAKCPGGCLLKVSIITAFR

KAG5559079.1 hypothetical protein RHGRI_008857 [Rhododendron griersonianum]1.9e-0446.75Show/hide
Query:  RDEVTTEEVPVGAVEGVEDGDLVAVEDLSSGGGRGPASECSAVVVESLVGDGMGGDEDDRAGAEVECEDGAIVSMEG
        R +V  EE P G+V G  D  LVA  DL+ G G G   +  A++ E LVG G G DED RAG + E ED A+   EG
Subjt:  RDEVTTEEVPVGAVEGVEDGDLVAVEDLSSGGGRGPASECSAVVVESLVGDGMGGDEDDRAGAEVECEDGAIVSMEG

KAG5559086.1 hypothetical protein RHGRI_008864 [Rhododendron griersonianum]1.0e-0550.65Show/hide
Query:  RDEVTTEEVPVGAVEGVEDGDLVAVEDLSSGGGRGPASECSAVVVESLVGDGMGGDEDDRAGAEVECEDGAIVSMEG
        R +V  EE P G+V G  D  LVA  DL+ G G G   E  AV+ E LVG G G DED RAG   E EDGA+   EG
Subjt:  RDEVTTEEVPVGAVEGVEDGDLVAVEDLSSGGGRGPASECSAVVVESLVGDGMGGDEDDRAGAEVECEDGAIVSMEG

KAG8649971.1 hypothetical protein MANES_08G163522v8, partial [Manihot esculenta]3.5e-0649.46Show/hide
Query:  QLNLPPPPPNLF-------STFRFFFLNLSALNSIASSHTSSFLAISATARCTVVFSGTTNLPSNTTSSVTVCGSAKCPGGCLLKVSIITAFR
        Q+ LP P   +F       S     F NLS LN+I SSHT     ISAT +  V   GT N PS T SS+T CG+ KCPGGC L  S ITAFR
Subjt:  QLNLPPPPPNLF-------STFRFFFLNLSALNSIASSHTSSFLAISATARCTVVFSGTTNLPSNTTSSVTVCGSAKCPGGCLLKVSIITAFR

KVH97470.1 hypothetical protein Ccrd_000444 [Cynara cardunculus var. scolymus]7.3e-0455.07Show/hide
Query:  FFLNLSALNSIASSHTSSFLAISATARCTVVFSGTTNLPSNTTSSVTVCGSAKCPGGCLLKVSIITAFR
        F  NLS LNSI SSHT     ISAT +  V  SG    PS +TS VT+CGS + P GCLL  S  TAFR
Subjt:  FFLNLSALNSIASSHTSSFLAISATARCTVVFSGTTNLPSNTTSSVTVCGSAKCPGGCLLKVSIITAFR

TrEMBL top hitse value%identityAlignment
A0A103XV92 Uncharacterized protein3.5e-0455.07Show/hide
Query:  FFLNLSALNSIASSHTSSFLAISATARCTVVFSGTTNLPSNTTSSVTVCGSAKCPGGCLLKVSIITAFR
        F  NLS LNSI SSHT     ISAT +  V  SG    PS +TS VT+CGS + P GCLL  S  TAFR
Subjt:  FFLNLSALNSIASSHTSSFLAISATARCTVVFSGTTNLPSNTTSSVTVCGSAKCPGGCLLKVSIITAFR

A0A5A7RHN9 Shikimate dehydrogenase1.2e-0454.55Show/hide
Query:  NLSALNSIASSHTSSFLAISATARCTVVFSGTTNLPSNTTSSVTVCGSAKCPGGCLLKVSIITAFR
        NLS LNS  SS T     ISAT + T  F GT   P+N+TS VT+CG  K PGGCLL+ S  TA R
Subjt:  NLSALNSIASSHTSSFLAISATARCTVVFSGTTNLPSNTTSSVTVCGSAKCPGGCLLKVSIITAFR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAAGGAGATGATCCTATGGGCCTCTCTTCTTTTAGCGAGCGGAAATGCGAGCCTGCAGCGGCGTCTTCATGACGATCGAAACCTCAAACTTCTCCTCAGGATCAA
CTTCACCCTCCTCATCCCATTTGAACAGCCATACCAAATTTCCCACAAAATACTGCAAATGAAGCATCGAAATCCCAGCTCCTGGGCACATTCTTCTCCCTCCCCCATAT
GGCATCAACTTAATCTCCCTCCTCCCCCTCCAAATCTCTTCTCTACCTTCCGCTTCTTCTTCCTCAATCTCTCCGCCCTGAACTCCATCGCCTCCTCCCATACCTCCTCG
TTCCTCGCCATCTCCGCCACCGCTAGATGCACTGTCGTTTTCTCCGGCACCACGAATCTCCCGTCCAATACCACCTCCTCTGTCACTGTATGTGGTAGTGCCAAATGCCC
TGGCGGATGCCTCCTCAAGGTCTCCATTATCACTGCTTTCAGAACGCGATGGAGGAGATCGGCTAGGGCTTTGATTCGATCCTCGTCGATCTTCAATCCAAAGCACATGA
ACACTGATAACTCCATCATAGTCGGCCAGAAATGGTCGACAAGGCGAACGGCAGTGGCGCCGCCCTGGGAGTGCGATTTCAGGCGAGAGACTAGCAAGTGCAGGCTCCAC
CGAGACGAGGTTACGACGGAGGAGGTTCCAGTTGGGGCCGTGGAAGGCGTTGAAGATGGTGATTTGGTTGCTGTAGAGGATCTTAGTAGTGGTGGAGGCAGGGGGCCGGC
CAGCGAATGCAGCGCCGTTGTGGTTGAGAGCTTGGTGGGCGATGGAATGGGCGGCGATGAAGATGACAGGGCGGGAGCCGAAGTGGAGTGTGAAGATGGGGCCATAGTGA
GCATGGAGGGTGTGAATGAGCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAAAGGAGATGATCCTATGGGCCTCTCTTCTTTTAGCGAGCGGAAATGCGAGCCTGCAGCGGCGTCTTCATGACGATCGAAACCTCAAACTTCTCCTCAGGATCAA
CTTCACCCTCCTCATCCCATTTGAACAGCCATACCAAATTTCCCACAAAATACTGCAAATGAAGCATCGAAATCCCAGCTCCTGGGCACATTCTTCTCCCTCCCCCATAT
GGCATCAACTTAATCTCCCTCCTCCCCCTCCAAATCTCTTCTCTACCTTCCGCTTCTTCTTCCTCAATCTCTCCGCCCTGAACTCCATCGCCTCCTCCCATACCTCCTCG
TTCCTCGCCATCTCCGCCACCGCTAGATGCACTGTCGTTTTCTCCGGCACCACGAATCTCCCGTCCAATACCACCTCCTCTGTCACTGTATGTGGTAGTGCCAAATGCCC
TGGCGGATGCCTCCTCAAGGTCTCCATTATCACTGCTTTCAGAACGCGATGGAGGAGATCGGCTAGGGCTTTGATTCGATCCTCGTCGATCTTCAATCCAAAGCACATGA
ACACTGATAACTCCATCATAGTCGGCCAGAAATGGTCGACAAGGCGAACGGCAGTGGCGCCGCCCTGGGAGTGCGATTTCAGGCGAGAGACTAGCAAGTGCAGGCTCCAC
CGAGACGAGGTTACGACGGAGGAGGTTCCAGTTGGGGCCGTGGAAGGCGTTGAAGATGGTGATTTGGTTGCTGTAGAGGATCTTAGTAGTGGTGGAGGCAGGGGGCCGGC
CAGCGAATGCAGCGCCGTTGTGGTTGAGAGCTTGGTGGGCGATGGAATGGGCGGCGATGAAGATGACAGGGCGGGAGCCGAAGTGGAGTGTGAAGATGGGGCCATAGTGA
GCATGGAGGGTGTGAATGAGCGATGA
Protein sequenceShow/hide protein sequence
MVKEMILWASLLLASGNASLQRRLHDDRNLKLLLRINFTLLIPFEQPYQISHKILQMKHRNPSSWAHSSPSPIWHQLNLPPPPPNLFSTFRFFFLNLSALNSIASSHTSS
FLAISATARCTVVFSGTTNLPSNTTSSVTVCGSAKCPGGCLLKVSIITAFRTRWRRSARALIRSSSIFNPKHMNTDNSIIVGQKWSTRRTAVAPPWECDFRRETSKCRLH
RDEVTTEEVPVGAVEGVEDGDLVAVEDLSSGGGRGPASECSAVVVESLVGDGMGGDEDDRAGAEVECEDGAIVSMEGVNER