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CmoCh20G010300 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G010300
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCmo_Chr20:8871674..8874793
RNA-Seq ExpressionCmoCh20G010300
SyntenyCmoCh20G010300
Gene Ontology termsNA
InterPro domainsIPR022203 - Protein of unknown function DUF3727


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571304.1 hypothetical protein SDJN03_30219, partial [Cucurbita argyrosperma subsp. sororia]1.4e-2088.52Show/hide
Query:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
        DDGQDVDVDGLPNEGVEITCFDM       DGAHYMIYTPSDPLLFVATKDKLGQLTIADD
Subjt:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
KAG7011085.1 hypothetical protein SDJN02_27883, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-2088.52Show/hide
Query:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
        DDGQDVDVDGLPNEGVEITCFDM       DGAHYMIYTPSDPLLFVATKDKLGQLTIADD
Subjt:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
XP_022932311.1 uncharacterized protein LOC111438664 [Cucurbita moschata]1.4e-2088.52Show/hide
Query:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
        DDGQDVDVDGLPNEGVEITCFDM       DGAHYMIYTPSDPLLFVATKDKLGQLTIADD
Subjt:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
XP_022973192.1 uncharacterized protein LOC111471694 [Cucurbita maxima]1.4e-2088.52Show/hide
Query:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
        DDGQDVDVDGLPNEGVEITCFDM       DGAHYMIYTPSDPLLFVATKDKLGQLTIADD
Subjt:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
XP_023512665.1 uncharacterized protein LOC111777348 [Cucurbita pepo subsp. pepo]1.4e-2088.52Show/hide
Query:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
        DDGQDVDVDGLPNEGVEITCFDM       DGAHYMIYTPSDPLLFVATKDKLGQLTIADD
Subjt:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
TrEMBL top hitse value%identityAlignment
A0A6J1DU07 uncharacterized protein LOC111024390 isoform X22.0e-1783.61Show/hide
Query:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
        DDGQ  DVDGLPNEGVEITCF M       DGAHYMIYTPSDPLLFVATKDKLGQLTIADD
Subjt:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
A0A6J1DXG8 uncharacterized protein LOC111024390 isoform X12.0e-1783.61Show/hide
Query:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
        DDGQ  DVDGLPNEGVEITCF M       DGAHYMIYTPSDPLLFVATKDKLGQLTIADD
Subjt:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
A0A6J1DZ59 uncharacterized protein LOC111024390 isoform X32.0e-1783.61Show/hide
Query:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
        DDGQ  DVDGLPNEGVEITCF M       DGAHYMIYTPSDPLLFVATKDKLGQLTIADD
Subjt:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
A0A6J1EW11 uncharacterized protein LOC1114386646.7e-2188.52Show/hide
Query:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
        DDGQDVDVDGLPNEGVEITCFDM       DGAHYMIYTPSDPLLFVATKDKLGQLTIADD
Subjt:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
A0A6J1I6V6 uncharacterized protein LOC1114716946.7e-2188.52Show/hide
Query:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
        DDGQDVDVDGLPNEGVEITCFDM       DGAHYMIYTPSDPLLFVATKDKLGQLTIADD
Subjt:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G33480.1 unknown protein8.4e-1667.21Show/hide
Query:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD
        DDGQ  DV+GLP EGVEITCF +       DG+HYM+YTPSDPLLFVA KD+ G L IADD
Subjt:  DDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCCTCCTGTGACAGATAATAGAAGACAAAAAATCACGTGTATGGAGGTTGCTTTCTTACCCATTGTCTTTGGTGATGATGGACAAGATGTAGATGTAGATGGCTT
GCCTAATGAGGGTGTAGAGATCACTTGCTTTGATATGATAGCTGAAGATTCTGAGCAGGATGGAGCACATTACATGATTTATACGCCATCTGATCCGCTTCTTTTTGTTG
CTACGAAGGACAAGCTTGGACAACTGACAATTGCTGATGATGTTCCTAAAGTATCCACGTGTCGCGCTCTAAGAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGCCTCCTGTGACAGATAATAGAAGACAAAAAATCACGTGTATGGAGGTTGCTTTCTTACCCATTGTCTTTGGTGATGATGGACAAGATGTAGATGTAGATGGCTT
GCCTAATGAGGGTGTAGAGATCACTTGCTTTGATATGATAGCTGAAGATTCTGAGCAGGATGGAGCACATTACATGATTTATACGCCATCTGATCCGCTTCTTTTTGTTG
CTACGAAGGACAAGCTTGGACAACTGACAATTGCTGATGATGTTCCTAAAGTATCCACGTGTCGCGCTCTAAGAGATTAG
Protein sequenceShow/hide protein sequence
MLPPVTDNRRQKITCMEVAFLPIVFGDDGQDVDVDGLPNEGVEITCFDMIAEDSEQDGAHYMIYTPSDPLLFVATKDKLGQLTIADDVPKVSTCRALRD