CuGenDBv2

Gene ID	CmoCh20G010500
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Vesicle transport protein
Genome location	Cmo_Chr20:9619549..9620998
RNA-Seq Expression	CmoCh20G010500
Synteny	CmoCh20G010500
Gene Ontology terms	GO:0015031 - protein transport (biological process) GO:0016192 - vesicle-mediated transport (biological process) GO:0000139 - Golgi membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR007305 - Vesicle transport protein, Got1/SFT2-like IPR011691 - Vesicle transport protein SFT2

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022932026.1 vesicle transport protein SFT2B isoform X1 [Cucurbita moschata]

1.7e-28

100

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Query:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF
        MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF
Subjt:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF

XP_022932027.1 vesicle transport protein SFT2B isoform X2 [Cucurbita moschata]

1.7e-28

100

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Query:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF
        MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF
Subjt:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF

XP_022973823.1 vesicle transport protein SFT2B isoform X1 [Cucurbita maxima]

2.3e-28

98.61

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Query:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF
        MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLAL+LEFGALIWYSLSYIPFARTMVSRVMVACLDTEF
Subjt:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF

XP_022973824.1 vesicle transport protein SFT2B isoform X2 [Cucurbita maxima]

2.3e-28

98.61

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Query:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF
        MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLAL+LEFGALIWYSLSYIPFARTMVSRVMVACLDTEF
Subjt:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF

XP_023512398.1 vesicle transport protein SFT2B isoform X2 [Cucurbita pepo subsp. pepo]

8.6e-28

95.83

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Query:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF
        MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLAL+LEFGAL+WYSLSYIPFARTMVSRV+VACLDTEF
Subjt:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CDD0 Vesicle transport protein

7.1e-28

95.83

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Query:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF
        MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLAL+LEFGALIWYSLSYIPFAR+MVS+VMVACLDTEF
Subjt:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF

A0A6J1EV79 Vesicle transport protein

8.3e-29

100

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Query:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF
        MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF
Subjt:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF

A0A6J1EVH7 Vesicle transport protein

8.3e-29

100

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Query:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF
        MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF
Subjt:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF

A0A6J1IE99 Vesicle transport protein

1.1e-28

98.61

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Query:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF
        MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLAL+LEFGALIWYSLSYIPFARTMVSRVMVACLDTEF
Subjt:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF

A0A6J1IFS2 Vesicle transport protein

1.1e-28

98.61

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Query:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF
        MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLAL+LEFGALIWYSLSYIPFARTMVSRVMVACLDTEF
Subjt:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF

SwissProt top hits

e value

%identity

Alignment

O95562 Vesicle transport protein SFT2B

1.6e-05

43.28

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Query:  MLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACL
        M +P R+ AT + L      L  A + HNK L L+  +L+  AL WYSLS+IPFAR  V +    CL
Subjt:  MLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACL

Q4FZV2 Vesicle transport protein SFT2B

3.6e-05

41.79

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Query:  MLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACL
        M +P R+ AT + L   +  L C+ ++ NK L L+  +L+  AL WYSLSYIP+AR  V +    CL
Subjt:  MLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACL

Q5SSN7 Vesicle transport protein SFT2A

1.8e-04

45.76

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Query:  MLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMV
        M +  R+ AT I L  ++F L  AL+   K L LL  +L+F ++ WYSLSYIP+AR  V
Subjt:  MLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMV

Q8VD57 Vesicle transport protein SFT2B

1.1e-04

44.12

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Query:  MLDPVRIYATAIYLASMIFAL-FCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACL
        M +P R+ AT + L  + FAL  C+ ++ NK L L+  +L+  AL WYSLSYIP+AR  V +    CL
Subjt:  MLDPVRIYATAIYLASMIFAL-FCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACL

Q8WV19 Vesicle transport protein SFT2A

8.1e-05

45.76

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Query:  MLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMV
        M +  R+ AT + L   IF L  AL+ H K L +L  +L+F ++ WYSLSYIP+AR  V
Subjt:  MLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMV

Arabidopsis top hits

e value

%identity

Alignment

AT5G23550.1 Got1/Sft2-like vescicle transport protein family

1.1e-25

79.17

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Query:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF
        MMLDP RIYATA+YLAS+I ALFCALYV NKLLTLLA++LEF  LIWYSLSYIPFARTMVS++ + C DTEF
Subjt:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF

AT5G24170.1 Got1/Sft2-like vescicle transport protein family

1.9e-17

60.56

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Query:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTE
        MM DPVR  AT+IY+  ++ AL CAL +H+K+LT+LA++ E  ALIWYSLSYIPFAR MVS +M+   DTE
Subjt:  MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTE

Sequences

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CDS sequence

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mRNA sequence

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ATGATGCTTGATCCTGTTCGGATTTATGCGACAGCCATATACCTTGCTAGCATGATCTTCGCCCTTTTTTGTGCTCTCTACGTCCACAACAAGCTGTTGACACTTCTTGC
ACTCGTTTTAGAATTCGGCGCCCTAATTTGGTATAGCTTAAGCTACATCCCTTTTGCAAGGACGATGGTTTCAAGGGTTATGGTAGCTTGTTTGGATACTGAGTTTTAGC
AGTAGACTCCGAGATCAACGTGTCGATCATCCTGGGTTCTTTTGGTGCAACATTGACGCTCGACATTGCTTCATGCATGACACGGGGCATTGTCGAACTTCATTGTATTA
TGTGTTTTTTAGGCCTTGTTTATGTCTCACTCAGACTAATTTCTTTATGTGAGTGTTCAATATGTGTGCTTTAAACAAGTATTATAAGCCTTGGTGATAGTATTCTCACT
TGTTTTCTAGAGGAGATTGAGCTGAGGTTGGCTGCCTAACATATGGAGTGAGTTGATAAAATAACATTGAACATTGGTGGAATACTCTGTTACTTTTATTTTTCCTTGAC
GTAGTAATAATGTTTGCTTTGGTCCG

Protein sequence

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MMLDPVRIYATAIYLASMIFALFCALYVHNKLLTLLALVLEFGALIWYSLSYIPFARTMVSRVMVACLDTEF

CmoCh20G010500 (gene) of Cucurbita moschata (Rifu) v1 genome