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CmoCh20G010660 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G010660
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTetratricopeptide-like helical
Genome locationCmo_Chr20:9869084..9872562
RNA-Seq ExpressionCmoCh20G010660
SyntenyCmoCh20G010660
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571344.1 hypothetical protein SDJN03_30259, partial [Cucurbita argyrosperma subsp. sororia]1.8e-10391.67Show/hide
Query:  MPMASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVEL
        MPMASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVEL
Subjt:  MPMASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVEL

Query:  LDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGY-----------PEVHAALAAALYVDKHAPLLAE
        LDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGY           PEVHAALAAALYVDKHAPLLAE
Subjt:  LDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGY-----------PEVHAALAAALYVDKHAPLLAE

Query:  NQFTIATLLDPHYVDIS----YVKETKH
        NQFTIATLLDPHYVDIS    + KE  H
Subjt:  NQFTIATLLDPHYVDIS----YVKETKH

XP_022156688.1 uncharacterized protein LOC111023534 [Momordica charantia]1.7e-9886.78Show/hide
Query:  MASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVELLD
        M S TAR LIPHL FPSSS++ NPNP KPSKP++  RLP+RRL LFSLP ATA +LPIP+NPI PSSC ALE F+PV+ SER+ASAA+SRRVSEAVELLD
Subjt:  MASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVELLD

Query:  KGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY
        KGRELQALGDFN+ALLYFTQVIDKYKDFAFSDYARVGRA ALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY
Subjt:  KGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY

Query:  VDISYVKETKHWPPSLISSLKNFLTLS
        VDISYVKETKHWPPSLISSL++FLTLS
Subjt:  VDISYVKETKHWPPSLISSLKNFLTLS

XP_022932010.1 uncharacterized protein LOC111438340 [Cucurbita moschata]6.1e-120100Show/hide
Query:  MPMASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVEL
        MPMASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVEL
Subjt:  MPMASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVEL

Query:  LDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP
        LDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP
Subjt:  LDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP

Query:  HYVDISYVKETKHWPPSLISSLKNFLTLS
        HYVDISYVKETKHWPPSLISSLKNFLTLS
Subjt:  HYVDISYVKETKHWPPSLISSLKNFLTLS

XP_022971626.1 uncharacterized protein LOC111470308 [Cucurbita maxima]7.2e-11396.07Show/hide
Query:  MPMASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVEL
        MPMASPTA PLIPHLLFPSSST  NPNPNKPSKPIS PRLPT+RLLLFSLPIATALLLPIPSNPIQPSSCDALE FDPVSRSEREASA ISRRVSEAVEL
Subjt:  MPMASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVEL

Query:  LDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP
        LDKGRELQALGDF+QALLYFTQVIDKYKDFAFSDYARVGRAFALYEIG REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP
Subjt:  LDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP

Query:  HYVDISYVKETKHWPPSLISSLKNFLTLS
        HYVDISYVKETKHWPPSLISSLKNFLTLS
Subjt:  HYVDISYVKETKHWPPSLISSLKNFLTLS

XP_023512389.1 uncharacterized protein LOC111777156 [Cucurbita pepo subsp. pepo]1.4e-11697.82Show/hide
Query:  MPMASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVEL
        MPMASPTARPLIPHLLFPSSSTNPNPNPNKPSKPIS PRLPTRRLLLFSLPIATALLLPIPSNPIQPSSC ALE FDPVSRSEREASAAISRRVSEAVEL
Subjt:  MPMASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVEL

Query:  LDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP
        LDKGRELQALGDF+ ALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP
Subjt:  LDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP

Query:  HYVDISYVKETKHWPPSLISSLKNFLTLS
        HYVDISYVKETKHWPPSLISSLKNFLTLS
Subjt:  HYVDISYVKETKHWPPSLISSLKNFLTLS

TrEMBL top hitse value%identityAlignment
A0A0A0LN32 Uncharacterized protein1.2e-9786.32Show/hide
Query:  MASPTARPLIPHLLFPSSSTNP-NPNPN---KPSKPISSPR---LPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVS
        M S TAR LIPHLL PSSS++  NP+ N   K SKP+S P    LPTRRLLLFSLPIATA LLPIP NPIQPSS  A+E FDPVSRSE++ASAAISRRVS
Subjt:  MASPTARPLIPHLLFPSSSTNP-NPNPN---KPSKPISSPR---LPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVS

Query:  EAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIA
        EAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRA ALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHA LLAENQFTIA
Subjt:  EAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIA

Query:  TLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS
        TLLDPHYVDISYVKETKHWPPSLISSL++FLTLS
Subjt:  TLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS

A0A5D3BSI6 Tetratricopeptide-like helical6.2e-8684.79Show/hide
Query:  MASPTARPLIPHLLFPSSST---------NPNPNPN-KPSKPISSPR---LPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAA
        M S TAR LIPHLLFPSSS+         NP+ NP+ K SKP+S P    LPTRRLLLFSLPIATA LLPIP+NPIQPSS  A+E FDPVSRSE+EASAA
Subjt:  MASPTARPLIPHLLFPSSST---------NPNPNPN-KPSKPISSPR---LPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAA

Query:  ISRRVSEAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAE
        ISRRVSEAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRA ALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHA LLAE
Subjt:  ISRRVSEAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAE

Query:  NQFTIATLLDPHYVDIS
        NQFTIATLLDPHYVDIS
Subjt:  NQFTIATLLDPHYVDIS

A0A6J1DRA5 uncharacterized protein LOC1110235348.4e-9986.78Show/hide
Query:  MASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVELLD
        M S TAR LIPHL FPSSS++ NPNP KPSKP++  RLP+RRL LFSLP ATA +LPIP+NPI PSSC ALE F+PV+ SER+ASAA+SRRVSEAVELLD
Subjt:  MASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVELLD

Query:  KGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY
        KGRELQALGDFN+ALLYFTQVIDKYKDFAFSDYARVGRA ALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY
Subjt:  KGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY

Query:  VDISYVKETKHWPPSLISSLKNFLTLS
        VDISYVKETKHWPPSLISSL++FLTLS
Subjt:  VDISYVKETKHWPPSLISSLKNFLTLS

A0A6J1F108 uncharacterized protein LOC1114383403.0e-120100Show/hide
Query:  MPMASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVEL
        MPMASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVEL
Subjt:  MPMASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVEL

Query:  LDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP
        LDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP
Subjt:  LDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP

Query:  HYVDISYVKETKHWPPSLISSLKNFLTLS
        HYVDISYVKETKHWPPSLISSLKNFLTLS
Subjt:  HYVDISYVKETKHWPPSLISSLKNFLTLS

A0A6J1I3T3 uncharacterized protein LOC1114703083.5e-11396.07Show/hide
Query:  MPMASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVEL
        MPMASPTA PLIPHLLFPSSST  NPNPNKPSKPIS PRLPT+RLLLFSLPIATALLLPIPSNPIQPSSCDALE FDPVSRSEREASA ISRRVSEAVEL
Subjt:  MPMASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVEL

Query:  LDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP
        LDKGRELQALGDF+QALLYFTQVIDKYKDFAFSDYARVGRAFALYEIG REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP
Subjt:  LDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDP

Query:  HYVDISYVKETKHWPPSLISSLKNFLTLS
        HYVDISYVKETKHWPPSLISSLKNFLTLS
Subjt:  HYVDISYVKETKHWPPSLISSLKNFLTLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCATGGCGTCTCCAACTGCGAGGCCACTGATTCCCCATCTCCTCTTTCCCTCTTCTTCCACAAACCCTAACCCTAACCCCAACAAACCTTCAAAACCCATCTCATC
TCCTCGATTACCCACCAGACGTTTGCTTCTCTTCTCCCTCCCCATCGCCACTGCCCTTCTCCTCCCAATTCCGAGCAATCCAATTCAGCCCAGTTCTTGCGACGCTCTGG
AAAGATTTGACCCTGTCAGCCGTTCTGAGCGAGAAGCGAGTGCCGCTATTTCCCGAAGAGTATCTGAAGCTGTGGAGCTTCTTGATAAAGGCAGGGAGTTGCAAGCTCTT
GGTGATTTCAATCAAGCTCTTCTCTACTTCACTCAGGTAATTGATAAATATAAAGATTTTGCCTTCTCGGACTATGCTCGAGTAGGCCGAGCATTCGCCCTGTATGAAAT
TGGTGACCGAGAAGAAGCAATTGCAGAGATGGAGGATGTTTCCATATCACTGAAGGGATATCCAGAAGTGCATGCGGCACTGGCTGCAGCCTTATACGTGGATAAACATG
CTCCATTGCTGGCTGAAAACCAATTCACCATAGCAACTTTGCTTGATCCTCATTATGTGGATATCTCGTATGTGAAAGAAACAAAGCACTGGCCTCCTAGTTTAATTAGT
TCTTTGAAGAATTTCTTAACACTTTCTTAG
mRNA sequenceShow/hide mRNA sequence
AAACGATATCTCAATGGTTAAGGCAATCTATATTGAAAATATGAAAATAAGGCTGAAGTTTTGCCACCAAAATCAACAGCCATGCCCATGGCGTCTCCAACTGCGAGGCC
ACTGATTCCCCATCTCCTCTTTCCCTCTTCTTCCACAAACCCTAACCCTAACCCCAACAAACCTTCAAAACCCATCTCATCTCCTCGATTACCCACCAGACGTTTGCTTC
TCTTCTCCCTCCCCATCGCCACTGCCCTTCTCCTCCCAATTCCGAGCAATCCAATTCAGCCCAGTTCTTGCGACGCTCTGGAAAGATTTGACCCTGTCAGCCGTTCTGAG
CGAGAAGCGAGTGCCGCTATTTCCCGAAGAGTATCTGAAGCTGTGGAGCTTCTTGATAAAGGCAGGGAGTTGCAAGCTCTTGGTGATTTCAATCAAGCTCTTCTCTACTT
CACTCAGGTAATTGATAAATATAAAGATTTTGCCTTCTCGGACTATGCTCGAGTAGGCCGAGCATTCGCCCTGTATGAAATTGGTGACCGAGAAGAAGCAATTGCAGAGA
TGGAGGATGTTTCCATATCACTGAAGGGATATCCAGAAGTGCATGCGGCACTGGCTGCAGCCTTATACGTGGATAAACATGCTCCATTGCTGGCTGAAAACCAATTCACC
ATAGCAACTTTGCTTGATCCTCATTATGTGGATATCTCGTATGTGAAAGAAACAAAGCACTGGCCTCCTAGTTTAATTAGTTCTTTGAAGAATTTCTTAACACTTTCTTA
GACATTTGTAATAATGTATAATACATACAACTCAATTCCTTGTTTTCTAAGTGTACAAAATGTATCATAGTCTATAGATAACTCTACAAACCCATGCAAGTAGTAGAAAA
ATAGTTTATTTTACGTCTCTTATCCCTTCAAATTGTAATATGAATTGATTTTCTTTCATTTGATCTTGCCCATTGCTTATCCTC
Protein sequenceShow/hide protein sequence
MPMASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVELLDKGRELQAL
GDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLIS
SLKNFLTLS