; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh20G011630 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh20G011630
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionGag/pol protein
Genome locationCmo_Chr20:11456119..11461512
RNA-Seq ExpressionCmoCh20G011630
SyntenyCmoCh20G011630
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR001878 - Zinc finger, CCHC-type
IPR012337 - Ribonuclease H-like superfamily
IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR036397 - Ribonuclease H superfamily
IPR036875 - Zinc finger, CCHC-type superfamily
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADJ18449.1 gag/pol protein, partial [Bryonia dioica]0.0e+0060.71Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        M  SIVQLLASEKLNGDNY+ WKSNLNTILV+DDL+FVLT+ECP  P  NANRT R+AYDRW+KANDKARVYILAS++DVLAKKHD + TAK IM+SL+ 
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQP +SLRHEAIK+IY  RMKEGTSVREHVLDMM+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+NLT LLNELQ +Q+L  +KG
Subjt:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISK-KLLRGSSSKNKSGPSTSKGVLMKKKGKGKNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEKTQQG------------
        +  EANVA++K K +RGSSSKNK GPS ++   MKKKGKG  K P   K K + ADKGKCFHCN++GHWKRNCPKYL EKKAEK  QG            
Subjt:  QTGEANVAISK-KLLRGSSSKNKSGPSTSKGVLMKKKGKGKNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEKTQQG------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------YRTKET---------------------------------------------------------------
                                       +RT ET                                                               
Subjt:  -------------------------------YRTKET---------------------------------------------------------------

Query:  ------LELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS
              LELVH+DLCGPMNVKARGGYEYFISFIDD+SRYG++YL+HHKSE+ EKF+EYK EV+N +GKTIKTLRSDRGGEYMD +FQDY+IE GI+SQLS
Subjt:  ------LELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS

Query:  APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK---------------------------------
        AP  PQQNGVSERRNRTLLDMVRSMMS+AQLPD FWGYA++TA +ILN VP+KSV ETPYELWKGRK                                 
Subjt:  APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK---------------------------------

Query:  -------------------------------------------------------------------------------------------------ETQ
                                                                                                         ETQ
Subjt:  -------------------------------------------------------------------------------------------------ETQ

Query:  VIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDYEETFSPVAM
        +IIPDDGVEDPLTYKQAMND DRDQWIKAMNLEMESMYFNSVW LV+ P  VKPIGCKWIYKRKRDQ GKVQTFKARLVAK YTQ+EGVDYEETFSPVAM
Subjt:  VIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDYEETFSPVAM

Query:  LKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNST
        LKSIRILLSIATFY+YEIWQMDVKTAFLNGNLEESIYM QPEGFI QD EQ+VCKL++SIYGLKQASRSWNI+FDTAIKSYGF+QNVDEPCVYK+IVNS 
Subjt:  LKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNST

Query:  VAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQ
        VAFL+LYVDDILLIGNDV  LTD+K WL TQFQMKDLGEAQ++LGIQIVRNRKNKTLA+SQAS IDK+L RYKMQ+SKKG LPFRHG+HLSKEQ PKTPQ
Subjt:  VAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQ

Query:  EVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKSTSRSVFTLN
        EVEDM++IPY+SAVGSLMYAMLCTRPDICY VGIVSRYQSNPGR HWTAVKNILKYLRRTR+YML+YGAKDLILTGYTDSDFQ+D D+RKSTS SVFTLN
Subjt:  EVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKSTSRSVFTLN

Query:  GGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQ
        GGA++WRS+KQ CIADSTMEAEYVAACEAAKE+VWLRKFLTDLEVVPNMHLP+TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIV RGDV+VTQ
Subjt:  GGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQ

KAA0026233.1 gag/pol protein [Cucumis melo var. makuwa]0.0e+0066.99Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        ++++ + +LA++KLNG+NY +WK+ +N +L+IDDL+FVL ++CP  P +NA RT R+ Y+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+ 
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQ  + ++H+A+KYIYN RM EG SVREHVL+MMVHFNVA  NEAVIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT LLNELQT++SL+  KG
Subjt:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAIS-KKLLRGSSSKNKSGPSTSKGVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEK---------TQQG
        Q GEANVA S +K  RGS+S  KS PS+S     KKK  G+G K  +   +  K  KA KG CF CN+ GHWKRNCPKYL +KK  K         T +G
Subjt:  QTGEANVAIS-KKLLRGSSSKNKSGPSTSKGVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEK---------TQQG

Query:  YRTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS
        +R KE LELVH+DLCGPMNVKARGG+EYFI+F DDYSRYGY+YLM HKSEALEKF+EYK EV+N L KTIKT RSDRGGEYMDL+FQ+Y++E GI SQLS
Subjt:  YRTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS

Query:  APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK---------------------------------
        AP  PQQNGVSERRNRTLLDMVRSMMS+A LP+ FWGYAV+TA YILN VP+KSVSETP +LW G K                                 
Subjt:  APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK---------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---ETQVIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDYEET
           ET  +I D  +EDPLT+K+AM D D+D+WIKAMNLE+ESMYFNSVW+LV+QPDGVKPIGCKWIYKRKR   GKVQTFKARLVAK YTQ EGVDYEET
Subjt:  ---ETQVIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDYEET

Query:  FSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYK
        FSPVAMLKSIRILLSIA ++DYEIWQMDVKTAFLNGNLEE+IYM QPEGFI    EQ++CKL RSIYGLKQASRSWNI+FDTAIKSYGF Q VDEPCVYK
Subjt:  FSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYK

Query:  RIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQ
        RI+N +VAFLVLYVDDILLIGND+G+LTDIK WLATQFQMKDLGEAQFVLGIQI R+RKNK LALSQAS IDK++++Y MQ+SK+GLLPFRHGV LSKEQ
Subjt:  RIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQ

Query:  SPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKSTSR
         PKTPQ+VE+M+HIPYASAVGSLMYAMLCTRPDICY VGIVSRYQSNPG AHWTAVK ILKYLRRTRDY L+YG+KDLILTGYTDSDFQTD DSRKSTS 
Subjt:  SPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKSTSR

Query:  SVFTLNGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDV
        SVFTLNGGA++WRSIKQGCIADSTMEAEYVAACEAAKE+VWLR FL DLEVVPNM  P+TLYCDNSGAVANS+EPRSHKRGKHIERKYHLIREIV RGDV
Subjt:  SVFTLNGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDV

Query:  IVTQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVM
        IVTQIAS HN+ADPFTKPLTAKVFEGHL SLGLR M
Subjt:  IVTQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVM

KAA0031826.1 gag/pol protein [Cucumis melo var. makuwa]0.0e+0057.43Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        MT++ + +LA++KLNG+NY +WK+ +NT+L+IDDL+FVL +ECP  P +NA RT R+ Y+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+ 
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQ  + ++H+A+KYIYN RM EG SVREHVL+MMVHFNVAE N AVIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT LLNELQT++SL+  KG
Subjt:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAIS-KKLLRGSSSKNKSGPSTSKGVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEK-------------
        Q GEANVA S +K  RGS+S  KS PS+S     KKK  G+G K  +   +  K  KA KG CFHCN+ GHWKRNCPKYL EKK  K             
Subjt:  QTGEANVAIS-KKLLRGSSSKNKSGPSTSKGVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEK-------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------------------------------------------------------------------------------T
                                                                                                           T
Subjt:  ---------------------------------------------------------------------------------------------------T

Query:  QQGYRTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRS
         +G+R KE LELVH+DLCGPMNVKARGG+EYFI+F DDYSRYGY+YLM HKSEALEKF+EYK EV+N L KTIKT RSDRGGEYMDL+FQ+Y++E GI S
Subjt:  QQGYRTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRS

Query:  QLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK------------------------------
        QLSAPG PQQNGVSERRNRTLLDMVRSMMS+A LP+ FWGYAV+TA YILN VP+KSVSETP +LW GRK                              
Subjt:  QLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------ETQVIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDY
              ET  +I D  +EDPLT+K+AM D D+D+WIKAMNLE+ESMYFNSVW+LV+QPDGVKPIGCKWIYKRKR   GKVQTFKARLVAK YTQ EGVDY
Subjt:  ------ETQVIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDY

Query:  EETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPC
        EETFSPVAMLKSIRILLSIA ++DYEIWQMDVKTAFLNGNLEE+IYM QPEGFI    EQ++CKL RSIYGLKQASRSWNI+FDTAIKSYGF Q VDEPC
Subjt:  EETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPC

Query:  VYKRIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLS
        VYKRI+N +VAFLVLYVDDILLIGND+G+LTDIK WLATQFQMKDLGEAQFVLGIQI R+RKNK LALSQAS IDK++++Y MQ+SK+GLLPFRHGV LS
Subjt:  VYKRIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLS

Query:  KEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKS
        KEQ PKTPQ+VE+M+HIPYASAVGSLMYAMLCTRPDICY VGIVSRYQSNPG AHWTAVK ILKYLRRTRDY L+YG+KDLILTGYTDSDFQTD DSRKS
Subjt:  KEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKS

Query:  TSRSVFTLNGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQR
        TS SVFTLNGGA++WRSIKQGCIADSTMEAEYVAACEAAKE+VWLR FL DLEVVPNM  P+TLYCDNSGAVANS+EPRSHKRGKHIERKYHLIREIV R
Subjt:  TSRSVFTLNGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQR

Query:  GDVIVTQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVM
        GDVIVTQIAS HN+ADPFTKPLTAKVFEGHL SLGLR M
Subjt:  GDVIVTQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVM

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]0.0e+0057.43Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        MT++ + +LA++KLNG+NY +WK+ +NT+L+IDDL+FVL +ECP  P +NA RT R+ Y+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+ 
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQ  + ++H+A+KYIYN RM EG SVREHVL+MMVHFNVAE N AVIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT LLNELQT++SL+  KG
Subjt:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAIS-KKLLRGSSSKNKSGPSTSKGVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEK-------------
        Q GEANVA S +K  RGS+S  KS PS+S     KKK  G+G K  +   +  K  KA KG CFHCN+ GHWKRNCPKYL EKK  K             
Subjt:  QTGEANVAIS-KKLLRGSSSKNKSGPSTSKGVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEK-------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------------------------------------------------------------------------------T
                                                                                                           T
Subjt:  ---------------------------------------------------------------------------------------------------T

Query:  QQGYRTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRS
         +G+R KE LELVH+DLCGPMNVKARGG+EYFI+F DDYSRYGY+YLM HKSEALEKF+EYK EV+N L KTIKT RSDRGGEYMDL+FQ+Y++E GI S
Subjt:  QQGYRTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRS

Query:  QLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK------------------------------
        QLSAPG PQQNGVSERRNRTLLDMVRSMMS+A LP+ FWGYAV+TA YILN VP+KSVSETP +LW GRK                              
Subjt:  QLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------ETQVIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDY
              ET  +I D  +EDPLT+K+AM D D+D+WIKAMNLE+ESMYFNSVW+LV+QPDGVKPIGCKWIYKRKR   GKVQTFKARLVAK YTQ EGVDY
Subjt:  ------ETQVIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDY

Query:  EETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPC
        EETFSPVAMLKSIRILLSIA ++DYEIWQMDVKTAFLNGNLEE+IYM QPEGFI    EQ++CKL RSIYGLKQASRSWNI+FDTAIKSYGF Q VDEPC
Subjt:  EETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPC

Query:  VYKRIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLS
        VYKRI+N +VAFLVLYVDDILLIGND+G+LTDIK WLATQFQMKDLGEAQFVLGIQI R+RKNK LALSQAS IDK++++Y MQ+SK+GLLPFRHGV LS
Subjt:  VYKRIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLS

Query:  KEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKS
        KEQ PKTPQ+VE+M+HIPYASAVGSLMYAMLCTRPDICY VGIVSRYQSNPG AHWTAVK ILKYLRRTRDY L+YG+KDLILTGYTDSDFQTD DSRKS
Subjt:  KEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKS

Query:  TSRSVFTLNGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQR
        TS SVFTLNGGA++WRSIKQGCIADSTMEAEYVAACEAAKE+VWLR FL DLEVVPNM  P+TLYCDNSGAVANS+EPRSHKRGKHIERKYHLIREIV R
Subjt:  TSRSVFTLNGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQR

Query:  GDVIVTQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVM
        GDVIVTQIAS HN+ADPFTKPLTAKVFEGHL SLGLR M
Subjt:  GDVIVTQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVM

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]0.0e+0057.51Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        MT++ + +LA++KLNG+NY +WK N NT+L+IDDL+FVL +ECP  P +NA RT R+ Y+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+ 
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQ  + ++H+A+KYIYN RM EG SVREHVL+MMVHFNVAE N AVIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT LLNELQT++SL+  KG
Subjt:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAIS-KKLLRGSSSKNKSGPSTSKGVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEK-------------
        Q GEANVA S +K  RGS+S  KS PS+S     KKK  G+G K  +   +  K  KA KG CFHCN+ GHWKRNCPKYL EKK  K             
Subjt:  QTGEANVAIS-KKLLRGSSSKNKSGPSTSKGVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEK-------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------------------------------------------------------------------------------T
                                                                                                           T
Subjt:  ---------------------------------------------------------------------------------------------------T

Query:  QQGYRTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRS
         +G+R KE LELVH+DLCGPMNVKARGG+EYFI+F DDYSRYGY+YLM HKSEALEKF+EYK EV+N L KTIKT RSDRGGEYMDL+FQ+Y++E GI S
Subjt:  QQGYRTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRS

Query:  QLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK------------------------------
        QLSAPG PQQNGVSERRNRTLLDMVRSMMS+A LP+ FWGYAV+TA YILN VP+KSVSETP +LW GRK                              
Subjt:  QLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------ETQVIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDY
              ET  +I D  +EDPLT+K+AM D D+D+WIKAMNLE+ESMYFNSVW+LV+QPDGVKPIGCKWIYKRKR   GKVQTFKARLVAK YTQ EGVDY
Subjt:  ------ETQVIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDY

Query:  EETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPC
        EETFSPVAMLKSIRILLSIA ++DYEIWQMDVKTAFLNGNLEE+IYM QPEGFI    EQ++CKL RSIYGLKQASRSWNI+FDTAIKSYGF Q VDEPC
Subjt:  EETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPC

Query:  VYKRIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLS
        VYKRI+N +VAFLVLYVDDILLIGND+G+LTDIK WLATQFQMKDLGEAQFVLGIQI R+RKNK LALSQAS IDK++++Y MQ+SK+GLLPFRHGV LS
Subjt:  VYKRIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLS

Query:  KEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKS
        KEQ PKTPQ+VE+M+HIPYASAVGSLMYAMLCTRPDICY VGIVSRYQSNPG AHWTAVK ILKYLRRTRDY L+YG+KDLILTGYTDSDFQTD DSRKS
Subjt:  KEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKS

Query:  TSRSVFTLNGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQR
        TS SVFTLNGGA++WRSIKQGCIADSTMEAEYVAACEAAKE+VWLR FL DLEVVPNM  P+TLYCDNSGAVANS+EPRSHKRGKHIERKYHLIREIV R
Subjt:  TSRSVFTLNGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQR

Query:  GDVIVTQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVM
        GDVIVTQIAS HN+ADPFTKPLTAKVFEGHL SLGLR M
Subjt:  GDVIVTQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVM

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein0.0e+0057.43Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        MT++ + +LA++KLNG+NY +WK+ +NT+L+IDDL+FVL +ECP  P +NA RT R+ Y+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+ 
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQ  + ++H+A+KYIYN RM EG SVREHVL+MMVHFNVAE N AVIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT LLNELQT++SL+  KG
Subjt:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAIS-KKLLRGSSSKNKSGPSTSKGVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEK-------------
        Q GEANVA S +K  RGS+S  KS PS+S     KKK  G+G K  +   +  K  KA KG CFHCN+ GHWKRNCPKYL EKK  K             
Subjt:  QTGEANVAIS-KKLLRGSSSKNKSGPSTSKGVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEK-------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------------------------------------------------------------------------------T
                                                                                                           T
Subjt:  ---------------------------------------------------------------------------------------------------T

Query:  QQGYRTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRS
         +G+R KE LELVH+DLCGPMNVKARGG+EYFI+F DDYSRYGY+YLM HKSEALEKF+EYK EV+N L KTIKT RSDRGGEYMDL+FQ+Y++E GI S
Subjt:  QQGYRTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRS

Query:  QLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK------------------------------
        QLSAPG PQQNGVSERRNRTLLDMVRSMMS+A LP+ FWGYAV+TA YILN VP+KSVSETP +LW GRK                              
Subjt:  QLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------ETQVIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDY
              ET  +I D  +EDPLT+K+AM D D+D+WIKAMNLE+ESMYFNSVW+LV+QPDGVKPIGCKWIYKRKR   GKVQTFKARLVAK YTQ EGVDY
Subjt:  ------ETQVIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDY

Query:  EETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPC
        EETFSPVAMLKSIRILLSIA ++DYEIWQMDVKTAFLNGNLEE+IYM QPEGFI    EQ++CKL RSIYGLKQASRSWNI+FDTAIKSYGF Q VDEPC
Subjt:  EETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPC

Query:  VYKRIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLS
        VYKRI+N +VAFLVLYVDDILLIGND+G+LTDIK WLATQFQMKDLGEAQFVLGIQI R+RKNK LALSQAS IDK++++Y MQ+SK+GLLPFRHGV LS
Subjt:  VYKRIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLS

Query:  KEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKS
        KEQ PKTPQ+VE+M+HIPYASAVGSLMYAMLCTRPDICY VGIVSRYQSNPG AHWTAVK ILKYLRRTRDY L+YG+KDLILTGYTDSDFQTD DSRKS
Subjt:  KEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKS

Query:  TSRSVFTLNGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQR
        TS SVFTLNGGA++WRSIKQGCIADSTMEAEYVAACEAAKE+VWLR FL DLEVVPNM  P+TLYCDNSGAVANS+EPRSHKRGKHIERKYHLIREIV R
Subjt:  TSRSVFTLNGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQR

Query:  GDVIVTQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVM
        GDVIVTQIAS HN+ADPFTKPLTAKVFEGHL SLGLR M
Subjt:  GDVIVTQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVM

A0A5A7SNP8 Gag/pol protein0.0e+0066.99Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        ++++ + +LA++KLNG+NY +WK+ +N +L+IDDL+FVL ++CP  P +NA RT R+ Y+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+ 
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQ  + ++H+A+KYIYN RM EG SVREHVL+MMVHFNVA  NEAVIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT LLNELQT++SL+  KG
Subjt:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAIS-KKLLRGSSSKNKSGPSTSKGVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEK---------TQQG
        Q GEANVA S +K  RGS+S  KS PS+S     KKK  G+G K  +   +  K  KA KG CF CN+ GHWKRNCPKYL +KK  K         T +G
Subjt:  QTGEANVAIS-KKLLRGSSSKNKSGPSTSKGVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEK---------TQQG

Query:  YRTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS
        +R KE LELVH+DLCGPMNVKARGG+EYFI+F DDYSRYGY+YLM HKSEALEKF+EYK EV+N L KTIKT RSDRGGEYMDL+FQ+Y++E GI SQLS
Subjt:  YRTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS

Query:  APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK---------------------------------
        AP  PQQNGVSERRNRTLLDMVRSMMS+A LP+ FWGYAV+TA YILN VP+KSVSETP +LW G K                                 
Subjt:  APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK---------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---ETQVIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDYEET
           ET  +I D  +EDPLT+K+AM D D+D+WIKAMNLE+ESMYFNSVW+LV+QPDGVKPIGCKWIYKRKR   GKVQTFKARLVAK YTQ EGVDYEET
Subjt:  ---ETQVIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDYEET

Query:  FSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYK
        FSPVAMLKSIRILLSIA ++DYEIWQMDVKTAFLNGNLEE+IYM QPEGFI    EQ++CKL RSIYGLKQASRSWNI+FDTAIKSYGF Q VDEPCVYK
Subjt:  FSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYK

Query:  RIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQ
        RI+N +VAFLVLYVDDILLIGND+G+LTDIK WLATQFQMKDLGEAQFVLGIQI R+RKNK LALSQAS IDK++++Y MQ+SK+GLLPFRHGV LSKEQ
Subjt:  RIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQ

Query:  SPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKSTSR
         PKTPQ+VE+M+HIPYASAVGSLMYAMLCTRPDICY VGIVSRYQSNPG AHWTAVK ILKYLRRTRDY L+YG+KDLILTGYTDSDFQTD DSRKSTS 
Subjt:  SPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKSTSR

Query:  SVFTLNGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDV
        SVFTLNGGA++WRSIKQGCIADSTMEAEYVAACEAAKE+VWLR FL DLEVVPNM  P+TLYCDNSGAVANS+EPRSHKRGKHIERKYHLIREIV RGDV
Subjt:  SVFTLNGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDV

Query:  IVTQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVM
        IVTQIAS HN+ADPFTKPLTAKVFEGHL SLGLR M
Subjt:  IVTQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVM

A0A5A7TZD7 Gag/pol protein0.0e+0057.51Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        MT++ + +LA++KLNG+NY +WK N NT+L+IDDL+FVL +ECP  P +NA RT R+ Y+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+ 
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQ  + ++H+A+KYIYN RM EG SVREHVL+MMVHFNVAE N AVIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT LLNELQT++SL+  KG
Subjt:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAIS-KKLLRGSSSKNKSGPSTSKGVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEK-------------
        Q GEANVA S +K  RGS+S  KS PS+S     KKK  G+G K  +   +  K  KA KG CFHCN+ GHWKRNCPKYL EKK  K             
Subjt:  QTGEANVAIS-KKLLRGSSSKNKSGPSTSKGVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEK-------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------------------------------------------------------------------------------T
                                                                                                           T
Subjt:  ---------------------------------------------------------------------------------------------------T

Query:  QQGYRTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRS
         +G+R KE LELVH+DLCGPMNVKARGG+EYFI+F DDYSRYGY+YLM HKSEALEKF+EYK EV+N L KTIKT RSDRGGEYMDL+FQ+Y++E GI S
Subjt:  QQGYRTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRS

Query:  QLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK------------------------------
        QLSAPG PQQNGVSERRNRTLLDMVRSMMS+A LP+ FWGYAV+TA YILN VP+KSVSETP +LW GRK                              
Subjt:  QLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------ETQVIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDY
              ET  +I D  +EDPLT+K+AM D D+D+WIKAMNLE+ESMYFNSVW+LV+QPDGVKPIGCKWIYKRKR   GKVQTFKARLVAK YTQ EGVDY
Subjt:  ------ETQVIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDY

Query:  EETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPC
        EETFSPVAMLKSIRILLSIA ++DYEIWQMDVKTAFLNGNLEE+IYM QPEGFI    EQ++CKL RSIYGLKQASRSWNI+FDTAIKSYGF Q VDEPC
Subjt:  EETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPC

Query:  VYKRIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLS
        VYKRI+N +VAFLVLYVDDILLIGND+G+LTDIK WLATQFQMKDLGEAQFVLGIQI R+RKNK LALSQAS IDK++++Y MQ+SK+GLLPFRHGV LS
Subjt:  VYKRIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLS

Query:  KEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKS
        KEQ PKTPQ+VE+M+HIPYASAVGSLMYAMLCTRPDICY VGIVSRYQSNPG AHWTAVK ILKYLRRTRDY L+YG+KDLILTGYTDSDFQTD DSRKS
Subjt:  KEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKS

Query:  TSRSVFTLNGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQR
        TS SVFTLNGGA++WRSIKQGCIADSTMEAEYVAACEAAKE+VWLR FL DLEVVPNM  P+TLYCDNSGAVANS+EPRSHKRGKHIERKYHLIREIV R
Subjt:  TSRSVFTLNGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQR

Query:  GDVIVTQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVM
        GDVIVTQIAS HN+ADPFTKPLTAKVFEGHL SLGLR M
Subjt:  GDVIVTQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVM

A0A5D3CPJ6 Gag/pol protein0.0e+0057.43Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        MT++ + +LA++KLNG+NY +WK+ +NT+L+IDDL+FVL +ECP  P +NA RT R+ Y+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+ 
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQ  + ++H+A+KYIYN RM EG SVREHVL+MMVHFNVAE N AVIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT LLNELQT++SL+  KG
Subjt:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAIS-KKLLRGSSSKNKSGPSTSKGVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEK-------------
        Q GEANVA S +K  RGS+S  KS PS+S     KKK  G+G K  +   +  K  KA KG CFHCN+ GHWKRNCPKYL EKK  K             
Subjt:  QTGEANVAIS-KKLLRGSSSKNKSGPSTSKGVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEK-------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------------------------------------------------------------------------------T
                                                                                                           T
Subjt:  ---------------------------------------------------------------------------------------------------T

Query:  QQGYRTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRS
         +G+R KE LELVH+DLCGPMNVKARGG+EYFI+F DDYSRYGY+YLM HKSEALEKF+EYK EV+N L KTIKT RSDRGGEYMDL+FQ+Y++E GI S
Subjt:  QQGYRTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRS

Query:  QLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK------------------------------
        QLSAPG PQQNGVSERRNRTLLDMVRSMMS+A LP+ FWGYAV+TA YILN VP+KSVSETP +LW GRK                              
Subjt:  QLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------ETQVIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDY
              ET  +I D  +EDPLT+K+AM D D+D+WIKAMNLE+ESMYFNSVW+LV+QPDGVKPIGCKWIYKRKR   GKVQTFKARLVAK YTQ EGVDY
Subjt:  ------ETQVIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDY

Query:  EETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPC
        EETFSPVAMLKSIRILLSIA ++DYEIWQMDVKTAFLNGNLEE+IYM QPEGFI    EQ++CKL RSIYGLKQASRSWNI+FDTAIKSYGF Q VDEPC
Subjt:  EETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPC

Query:  VYKRIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLS
        VYKRI+N +VAFLVLYVDDILLIGND+G+LTDIK WLATQFQMKDLGEAQFVLGIQI R+RKNK LALSQAS IDK++++Y MQ+SK+GLLPFRHGV LS
Subjt:  VYKRIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLS

Query:  KEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKS
        KEQ PKTPQ+VE+M+HIPYASAVGSLMYAMLCTRPDICY VGIVSRYQSNPG AHWTAVK ILKYLRRTRDY L+YG+KDLILTGYTDSDFQTD DSRKS
Subjt:  KEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKS

Query:  TSRSVFTLNGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQR
        TS SVFTLNGGA++WRSIKQGCIADSTMEAEYVAACEAAKE+VWLR FL DLEVVPNM  P+TLYCDNSGAVANS+EPRSHKRGKHIERKYHLIREIV R
Subjt:  TSRSVFTLNGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQR

Query:  GDVIVTQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVM
        GDVIVTQIAS HN+ADPFTKPLTAKVFEGHL SLGLR M
Subjt:  GDVIVTQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVM

E2GK51 Gag/pol protein (Fragment)0.0e+0060.71Show/hide
Query:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
        M  SIVQLLASEKLNGDNY+ WKSNLNTILV+DDL+FVLT+ECP  P  NANRT R+AYDRW+KANDKARVYILAS++DVLAKKHD + TAK IM+SL+ 
Subjt:  MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG

Query:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG
        MFGQP +SLRHEAIK+IY  RMKEGTSVREHVLDMM+HFN+AE N   IDE +QVSFI+ SLPKSF  F+TN  +NKIE+NLT LLNELQ +Q+L  +KG
Subjt:  MFGQPYFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKG

Query:  QTGEANVAISK-KLLRGSSSKNKSGPSTSKGVLMKKKGKGKNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEKTQQG------------
        +  EANVA++K K +RGSSSKNK GPS ++   MKKKGKG  K P   K K + ADKGKCFHCN++GHWKRNCPKYL EKKAEK  QG            
Subjt:  QTGEANVAISK-KLLRGSSSKNKSGPSTSKGVLMKKKGKGKNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEKTQQG------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -------------------------------YRTKET---------------------------------------------------------------
                                       +RT ET                                                               
Subjt:  -------------------------------YRTKET---------------------------------------------------------------

Query:  ------LELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS
              LELVH+DLCGPMNVKARGGYEYFISFIDD+SRYG++YL+HHKSE+ EKF+EYK EV+N +GKTIKTLRSDRGGEYMD +FQDY+IE GI+SQLS
Subjt:  ------LELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS

Query:  APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK---------------------------------
        AP  PQQNGVSERRNRTLLDMVRSMMS+AQLPD FWGYA++TA +ILN VP+KSV ETPYELWKGRK                                 
Subjt:  APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVSETPYELWKGRK---------------------------------

Query:  -------------------------------------------------------------------------------------------------ETQ
                                                                                                         ETQ
Subjt:  -------------------------------------------------------------------------------------------------ETQ

Query:  VIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDYEETFSPVAM
        +IIPDDGVEDPLTYKQAMND DRDQWIKAMNLEMESMYFNSVW LV+ P  VKPIGCKWIYKRKRDQ GKVQTFKARLVAK YTQ+EGVDYEETFSPVAM
Subjt:  VIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDYEETFSPVAM

Query:  LKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNST
        LKSIRILLSIATFY+YEIWQMDVKTAFLNGNLEESIYM QPEGFI QD EQ+VCKL++SIYGLKQASRSWNI+FDTAIKSYGF+QNVDEPCVYK+IVNS 
Subjt:  LKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNST

Query:  VAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQ
        VAFL+LYVDDILLIGNDV  LTD+K WL TQFQMKDLGEAQ++LGIQIVRNRKNKTLA+SQAS IDK+L RYKMQ+SKKG LPFRHG+HLSKEQ PKTPQ
Subjt:  VAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQ

Query:  EVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKSTSRSVFTLN
        EVEDM++IPY+SAVGSLMYAMLCTRPDICY VGIVSRYQSNPGR HWTAVKNILKYLRRTR+YML+YGAKDLILTGYTDSDFQ+D D+RKSTS SVFTLN
Subjt:  EVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKSTSRSVFTLN

Query:  GGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQ
        GGA++WRS+KQ CIADSTMEAEYVAACEAAKE+VWLRKFLTDLEVVPNMHLP+TLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIV RGDV+VTQ
Subjt:  GGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQ

SwissProt top hitse value%identityAlignment
P04146 Copia protein6.3e-10026.89Show/hide
Query:  KETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPG
        K  L +VH+D+CGP+         YF+ F+D ++ Y   YL+ +KS+    F+++  + +      +  L  D G EY+    + + ++ GI   L+ P 
Subjt:  KETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPG

Query:  MPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSV---SETPYELWKGRK---------------------------------
         PQ NGVSER  RT+ +  R+M+S A+L   FWG AV TATY++N +P++++   S+TPYE+W  +K                                 
Subjt:  MPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSV---SETPYELWKGRK---------------------------------

Query:  ---------------------------ETQVI----------------------------------------------------------IPDD------
                                   ET ++                                                           P+D      
Subjt:  ---------------------------ETQVI----------------------------------------------------------IPDD------

Query:  ---------------------------------------------------------------GVEDP---------------------LTYKQAMND--
                                                                       G+++P                     ++Y +  N   
Subjt:  ---------------------------------------------------------------GVEDP---------------------LTYKQAMND--

Query:  -----------------------EDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDYEETFSP
                               +D+  W +A+N E+ +   N+ W +  +P+    +  +W++  K ++ G    +KARLVA+ +TQ+  +DYEETF+P
Subjt:  -----------------------EDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDYEETFSP

Query:  VAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVY---K
        VA + S R +LS+   Y+ ++ QMDVKTAFLNG L+E IYM  P+G     +   VCKL ++IYGLKQA+R W   F+ A+K   F  +  + C+Y   K
Subjt:  VAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVY---K

Query:  RIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQ
          +N  + +++LYVDD+++   D+  + + K +L  +F+M DL E +  +GI+I    +   + LSQ++ + K+L ++ M++      P    ++     
Subjt:  RIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQ

Query:  SPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYG---AKDLILTGYTDSDFQTDVDSRKS
        S       ++  + P  S +G LMY MLCTRPD+   V I+SRY S      W  +K +L+YL+ T D  L++    A +  + GY DSD+      RKS
Subjt:  SPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYG---AKDLILTGYTDSDFQTDVDSRKS

Query:  TSRSVFTL-NGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQ
        T+  +F + +   I W + +Q  +A S+ EAEY+A  EA +E++WL+  LT + +   +  P+ +Y DN G ++ +  P  HKR KHI+ KYH  RE VQ
Subjt:  TSRSVFTL-NGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQ

Query:  RGDVIVTQIASEHNIADPFTKPLTAKVFEGHLVSLGL
           + +  I +E+ +AD FTKPL A  F      LGL
Subjt:  RGDVIVTQIASEHNIADPFTKPLTAKVFEGHLVSLGL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-949.3e-16038.11Show/hide
Query:  RTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSA
        R    L+LV++D+CGPM +++ GG +YF++FIDD SR  ++Y++  K +  + F+++   V+   G+ +K LRSD GGEY    F++Y   HGIR + + 
Subjt:  RTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSA

Query:  PGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPT--------------KSVS-------------------------------
        PG PQ NGV+ER NRT+++ VRSM+  A+LP  FWG AV+TA Y++N  P+              K VS                               
Subjt:  PGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPT--------------KSVS-------------------------------

Query:  -------ETPYELWKGRK------------ETQV-------------IIP---------------------------------------DDGVE------
               E  Y LW   K            E++V             IIP                                       D+GVE      
Subjt:  -------ETPYELWKGRK------------ETQV-------------IIP---------------------------------------DDGVE------

Query:  ----------------------------------DPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFK
                                          +P + K+ ++  +++Q +KAM  EMES+  N  ++LV  P G +P+ CKW++K K+D   K+  +K
Subjt:  ----------------------------------DPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFK

Query:  ARLVAKDYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFD
        ARLV K + Q++G+D++E FSPV  + SIR +LS+A   D E+ Q+DVKTAFL+G+LEE IYM QPEGF     +  VCKL +S+YGLKQA R W +KFD
Subjt:  ARLVAKDYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFD

Query:  TAIKSYGFKQNVDEPCVY-KRIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKM
        + +KS  + +   +PCVY KR   +    L+LYVDD+L++G D G++  +K  L+  F MKDLG AQ +LG++IVR R ++ L LSQ   I+++L R+ M
Subjt:  TAIKSYGFKQNVDEPCVY-KRIVNSTVAFLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKM

Query:  QDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLIL
        +++K    P    + LSK+  P T +E  +M  +PY+SAVGSLMYAM+CTRPDI + VG+VSR+  NPG+ HW AVK IL+YLR T    L +G  D IL
Subjt:  QDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLIL

Query:  TGYTDSDFQTDVDSRKSTSRSVFTLNGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKR
         GYTD+D   D+D+RKS++  +FT +GGAI W+S  Q C+A ST EAEY+AA E  KE +WL++FL +L +    ++   +YCD+  A+  SK    H R
Subjt:  TGYTDSDFQTDVDSRKSTSRSVFTLNGGAIIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKR

Query:  GKHIERKYHLIREIVQRGDVIVTQIASEHNIADPFTKPLTAKVFE
         KHI+ +YH IRE+V    + V +I++  N AD  TK +    FE
Subjt:  GKHIERKYHLIREIVQRGDVIVTQIASEHNIADPFTKPLTAKVFE

P25600 Putative transposon Ty5-1 protein YCL074W1.9e-3533.12Show/hide
Query:  MDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLYVDDILLIGNDVGI
        MDV TAFLN  ++E IY+ QP GF+ + +   V +L   +YGLKQA   WN   +  +K  GF ++  E  +Y R  +    ++ +YVDD+L+      I
Subjt:  MDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLYVDDILLIGNDVGI

Query:  LTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYA
           +K  L   + MKDLG+    LG+ I     N  + LS    I K     ++   K    P  +   L +  SP     ++D+   PY S VG L++ 
Subjt:  LTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASAVGSLMYA

Query:  MLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMY-GAKDLILTGYTDSDFQTDVDSRKSTSRSVFTLNGGAIIWRSIK-QGCIADST
            RPDI Y V ++SR+   P   H  + + +L+YL  TR   L Y     L LT Y D+      D   ST   V  L G  + W S K +G I   +
Subjt:  MLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMY-GAKDLILTGYTDSDFQTDVDSRKSTSRSVFTLNGGAIIWRSIK-QGCIADST

Query:  MEAEYVAACEAAKE
         EAEY+ A E   E
Subjt:  MEAEYVAACEAAKE

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.2e-8436.35Show/hide
Query:  DPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDG-VKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDYEETFSPVAMLKSIRILL
        +P T  QA+ DE   +W  AM  E+ +   N  W+LV  P   V  +GC+WI+ +K +  G +  +KARLVAK Y QR G+DY ETFSPV    SIRI+L
Subjt:  DPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDG-VKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDYEETFSPVAMLKSIRILL

Query:  SIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLYV
         +A    + I Q+DV  AFL G L + +YM+QP GFI++D    VCKL++++YGLKQA R+W ++    + + GF  +V +  ++      ++ ++++YV
Subjt:  SIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLYV

Query:  DDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHI
        DDIL+ GND  +L +    L+ +F +KD  E  + LGI+    R    L LSQ   I  +L R  M  +K    P      LS     K     E     
Subjt:  DDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHI

Query:  PYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDY-MLMYGAKDLILTGYTDSDFQTDVDSRKSTSRSVFTLNGGAIIWR
         Y   VGSL Y +  TRPDI Y V  +S++   P   H  A+K IL+YL  T ++ + +     L L  Y+D+D+  D D   ST+  +  L    I W 
Subjt:  PYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDY-MLMYGAKDLILTGYTDSDFQTDVDSRKSTSRSVFTLNGGAIIWR

Query:  SIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIASEHNIAD
        S KQ  +  S+ EAEY +    + E  W+   LT+L +   +  P  +YCDN GA      P  H R KHI   YH IR  VQ G + V  +++   +AD
Subjt:  SIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIASEHNIAD

Query:  PFTKPLTAKVFEGHLVSLGL
          TKPL+   F+     +G+
Subjt:  PFTKPLTAKVFEGHLVSLGL

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.6e-2130.94Show/hide
Query:  NCPKYLVEK--KAEKTQQGYRTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEY
        +C   L+ K  K   +Q    +   LE +++D+     + +   Y Y++ F+D ++RY +LY +  KS+  E F  +K  ++N     I T  SD GGE+
Subjt:  NCPKYLVEK--KAEKTQQGYRTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEY

Query:  MDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVS-ETPYE
        + L   +Y  +HGI    S P  P+ NG+SER++R +++   +++S A +P  +W YA   A Y++N +PT  +  E+P++
Subjt:  MDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVS-ETPYE

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.4e-8635.96Show/hide
Query:  DPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELV-NQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDYEETFSPVAMLKSIRILL
        +P T  QAM D   D+W +AM  E+ +   N  W+LV   P  V  +GC+WI+ +K +  G +  +KARLVAK Y QR G+DY ETFSPV    SIRI+L
Subjt:  DPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELV-NQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDYEETFSPVAMLKSIRILL

Query:  SIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLYV
         +A    + I Q+DV  AFL G L + +YM+QP GF+++D    VC+L+++IYGLKQA R+W ++  T + + GF  ++ +  ++      ++ ++++YV
Subjt:  SIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFLVLYV

Query:  DDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHI
        DDIL+ GND  +L      L+ +F +K+  +  + LGI+    R  + L LSQ      +L R  M  +K    P      L+     K P   E     
Subjt:  DDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHI

Query:  PYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDY-MLMYGAKDLILTGYTDSDFQTDVDSRKSTSRSVFTLNGGAIIWR
         Y   VGSL Y +  TRPD+ Y V  +S+Y   P   HW A+K +L+YL  T D+ + +     L L  Y+D+D+  D D   ST+  +  L    I W 
Subjt:  PYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDY-MLMYGAKDLILTGYTDSDFQTDVDSRKSTSRSVFTLNGGAIIWR

Query:  SIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIASEHNIAD
        S KQ  +  S+ EAEY +    + E  W+   LT+L +   +  P  +YCDN GA      P  H R KHI   YH IR  VQ G + V  +++   +AD
Subjt:  SIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIASEHNIAD

Query:  PFTKPLTAKVFEGHLVSLGL
          TKPL+   F+     +G+
Subjt:  PFTKPLTAKVFEGHLVSLGL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.1e-2233.75Show/hide
Query:  TKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAP
        + + LE +++D+     + +   Y Y++ F+D ++RY +LY +  KS+  + F  +K+ V+N     I TL SD GGE++ LR  DY+ +HGI    S P
Subjt:  TKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAP

Query:  GMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVS-ETPYE
          P+ NG+SER++R +++M  +++S A +P  +W YA   A Y++N +PT  +  ++P++
Subjt:  GMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTKSVS-ETPYE

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.4e-7834.92Show/hide
Query:  EDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDYEETFSPVAMLKSIRILL
        ++P TY +A   ++   W  AM+ E+ +M     WE+   P   KPIGCKW+YK K +  G ++ +KARLVAK YTQ+EG+D+ ETFSPV  L S++++L
Subjt:  EDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDYEETFSPVAMLKSIRILL

Query:  SIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHE----QRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFL
        +I+  Y++ + Q+D+  AFLNG+L+E IYM  P G+  +  +      VC LK+SIYGLKQASR W +KF   +  +GF Q+  +   + +I  +    +
Subjt:  SIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHE----QRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAFL

Query:  VLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVED
        ++YVDDI++  N+   + ++K  L + F+++DLG  ++ LG++I R+     + + Q      +L    +   K   +P    V  S         +  D
Subjt:  VLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVED

Query:  MKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAK-DLILTGYTDSDFQTDVDSRKSTSRSVFTLNGGA
         K   Y   +G LMY  + TR DI + V  +S++   P  AH  AV  IL Y++ T    L Y ++ ++ L  ++D+ FQ+  D+R+ST+     L    
Subjt:  MKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAK-DLILTGYTDSDFQTDVDSRKSTSRSVFTLNGGA

Query:  IIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE
        I W+S KQ  ++ S+ EAEY A   A  E +WL +F  +L++   +  P  L+CDN+ A+  +     H+R KHIE   H +RE
Subjt:  IIWRSIKQGCIADSTMEAEYVAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIRE

ATMG00810.1 DNA/RNA polymerases superfamily protein1.1e-1932.05Show/hide
Query:  FLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEV
        +L+LYVDDILL G+   +L  +   L++ F MKDLG   + LGIQI  +     L LSQ    +++L    M D K    P    ++ S   + K P   
Subjt:  FLVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEV

Query:  EDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDY-MLMYGAKDLILTGYTDSDFQTDVDSRKSTSRSVFTLNG
        +      + S VG+L Y  L TRPDI Y V IV +    P  A +  +K +L+Y++ T  + + ++    L +  + DSD+     +R+ST+     L  
Subjt:  EDMKHIPYASAVGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDY-MLMYGAKDLILTGYTDSDFQTDVDSRKSTSRSVFTLNG

Query:  GAIIWRSIKQGCIADSTMEAEYVAACEAAKESVW
          I W + +Q  ++ S+ E EY A    A E  W
Subjt:  GAIIWRSIKQGCIADSTMEAEYVAACEAAKESVW

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)5.4e-1440.7Show/hide
Query:  WIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDYEETFSPVAMLKSIRILLSIA
        W +AM  E++++  N  W LV  P     +GCKW++K K    G +   KARLVAK + Q EG+ + ET+SPV    +IR +L++A
Subjt:  WIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDYEETFSPVAMLKSIRILLSIA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTGGTCATTGATGATTTAAAGTT
TGTTTTAACTAAAGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAACAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTC
TAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTACTTCTCCCTTAGA
CATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGAACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGC
TGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTG
CTCTTCTCAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTACGAGGATCGTCCTCCAAA
AATAAGTCTGGACCTTCAACTTCTAAAGGTGTTTTGATGAAGAAGAAGGGAAAGGGGAAAAATAAGATTCCTACTAACCGCAAGAACAAGGTTCAAAAAGCAGATAAAGG
AAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCAAAATACCTTGTAGAGAAGAAAGCCGAAAAGACACAACAAGGTTATAGAACCAAAGAAACCT
TAGAACTCGTGCATACAGATCTCTGTGGTCCAATGAATGTCAAAGCACGAGGAGGGTATGAATATTTCATCAGTTTTATTGATGATTATTCAAGGTATGGCTATCTTTAC
CTAATGCATCACAAGTCCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTCAGAATCTATTAGGTAAAACTATTAAAACACTTCGATCAGATCGAGGAGGAGA
GTACATGGATTTAAGATTTCAGGACTATATGATAGAACATGGAATAAGGTCTCAACTCTCAGCCCCTGGTATGCCTCAACAAAATGGTGTATCAGAAAGAAGAAATAGAA
CTCTATTAGACATGGTTCGGTCTATGATGAGTTTCGCTCAATTACCCGATCCATTTTGGGGATATGCAGTAAAGACTGCTACATACATTTTGAACATGGTTCCTACTAAG
AGTGTTTCAGAAACACCTTATGAGTTATGGAAAGGGCGTAAAGAAACTCAAGTCATCATACCTGATGATGGCGTTGAGGATCCATTGACCTATAAACAGGCAATGAATGA
TGAGGATAGAGATCAGTGGATTAAAGCCATGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGGAACTTGTAAATCAACCGGATGGGGTAAAACCTATTGGTT
GCAAATGGATCTATAAGAGGAAACGAGACCAAACCGGTAAGGTACAGACCTTTAAAGCACGACTAGTAGCAAAGGATTATACCCAAAGAGAGGGGGTGGACTATGAAGAA
ACCTTCTCTCCTGTTGCTATGCTTAAATCAATAAGAATACTCTTGTCTATTGCCACATTTTATGATTATGAAATTTGGCAAATGGATGTTAAGACAGCTTTTCTAAACGG
CAATCTTGAAGAGAGTATCTATATGGCTCAACCAGAGGGGTTCATTGAACAGGATCACGAGCAAAGGGTTTGCAAGCTTAAAAGATCCATTTATGGGTTGAAGCAAGCAT
CTCGATCCTGGAATATAAAGTTTGATACTGCGATCAAATCTTATGGCTTTAAACAGAATGTTGACGAACCTTGTGTTTATAAAAGGATAGTCAACTCTACAGTAGCTTTC
CTGGTGTTGTACGTTGACGATATCCTACTCATTGGAAATGATGTGGGAATTCTGACTGACATTAAGCATTGGCTGGCGACACAATTCCAAATGAAAGATTTGGGAGAGGC
TCAGTTTGTTCTTGGAATCCAAATTGTTCGGAATCGCAAGAACAAAACACTAGCATTGTCTCAAGCATCGAACATCGACAAAATGTTGATTCGATATAAGATGCAGGACT
CCAAGAAAGGATTATTACCTTTCAGGCATGGAGTTCATTTGTCGAAGGAACAAAGTCCTAAGACACCTCAAGAAGTTGAGGATATGAAACACATTCCCTATGCATCAGCG
GTCGGTAGTCTGATGTATGCCATGCTTTGTACCCGACCCGACATATGCTATGTTGTGGGAATTGTCAGCAGATATCAGTCCAATCCGGGACGTGCTCATTGGACTGCCGT
TAAGAATATCCTCAAGTATCTTAGGAGAACGAGGGACTATATGCTAATGTACGGTGCTAAGGATCTGATCCTTACAGGGTACACTGACTCAGATTTTCAGACGGATGTTG
ATTCGAGGAAATCGACATCAAGATCTGTCTTCACTCTGAACGGAGGAGCAATAATATGGAGAAGCATAAAGCAAGGTTGCATTGCTGATTCCACCATGGAGGCTGAGTAT
GTTGCTGCTTGTGAAGCAGCGAAAGAATCTGTATGGCTTAGGAAGTTCTTAACTGATTTGGAAGTCGTTCCAAATATGCATCTTCCCGTCACTCTTTATTGTGATAACAG
TGGAGCAGTTGCAAATTCAAAAGAACCAAGAAGCCATAAGCGAGGAAAACATATTGAACGCAAATATCATCTCATAAGGGAGATTGTGCAACGAGGAGATGTGATCGTCA
CACAGATAGCTTCAGAGCACAACATTGCTGATCCATTTACAAAGCCCCTCACGGCTAAAGTGTTTGAAGGGCACCTAGTGAGTCTAGGACTACGAGTTATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTGGTCATTGATGATTTAAAGTT
TGTTTTAACTAAAGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAACAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTC
TAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTACTTCTCCCTTAGA
CATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGAACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGC
TGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTG
CTCTTCTCAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTACGAGGATCGTCCTCCAAA
AATAAGTCTGGACCTTCAACTTCTAAAGGTGTTTTGATGAAGAAGAAGGGAAAGGGGAAAAATAAGATTCCTACTAACCGCAAGAACAAGGTTCAAAAAGCAGATAAAGG
AAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCAAAATACCTTGTAGAGAAGAAAGCCGAAAAGACACAACAAGGTTATAGAACCAAAGAAACCT
TAGAACTCGTGCATACAGATCTCTGTGGTCCAATGAATGTCAAAGCACGAGGAGGGTATGAATATTTCATCAGTTTTATTGATGATTATTCAAGGTATGGCTATCTTTAC
CTAATGCATCACAAGTCCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTCAGAATCTATTAGGTAAAACTATTAAAACACTTCGATCAGATCGAGGAGGAGA
GTACATGGATTTAAGATTTCAGGACTATATGATAGAACATGGAATAAGGTCTCAACTCTCAGCCCCTGGTATGCCTCAACAAAATGGTGTATCAGAAAGAAGAAATAGAA
CTCTATTAGACATGGTTCGGTCTATGATGAGTTTCGCTCAATTACCCGATCCATTTTGGGGATATGCAGTAAAGACTGCTACATACATTTTGAACATGGTTCCTACTAAG
AGTGTTTCAGAAACACCTTATGAGTTATGGAAAGGGCGTAAAGAAACTCAAGTCATCATACCTGATGATGGCGTTGAGGATCCATTGACCTATAAACAGGCAATGAATGA
TGAGGATAGAGATCAGTGGATTAAAGCCATGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGGAACTTGTAAATCAACCGGATGGGGTAAAACCTATTGGTT
GCAAATGGATCTATAAGAGGAAACGAGACCAAACCGGTAAGGTACAGACCTTTAAAGCACGACTAGTAGCAAAGGATTATACCCAAAGAGAGGGGGTGGACTATGAAGAA
ACCTTCTCTCCTGTTGCTATGCTTAAATCAATAAGAATACTCTTGTCTATTGCCACATTTTATGATTATGAAATTTGGCAAATGGATGTTAAGACAGCTTTTCTAAACGG
CAATCTTGAAGAGAGTATCTATATGGCTCAACCAGAGGGGTTCATTGAACAGGATCACGAGCAAAGGGTTTGCAAGCTTAAAAGATCCATTTATGGGTTGAAGCAAGCAT
CTCGATCCTGGAATATAAAGTTTGATACTGCGATCAAATCTTATGGCTTTAAACAGAATGTTGACGAACCTTGTGTTTATAAAAGGATAGTCAACTCTACAGTAGCTTTC
CTGGTGTTGTACGTTGACGATATCCTACTCATTGGAAATGATGTGGGAATTCTGACTGACATTAAGCATTGGCTGGCGACACAATTCCAAATGAAAGATTTGGGAGAGGC
TCAGTTTGTTCTTGGAATCCAAATTGTTCGGAATCGCAAGAACAAAACACTAGCATTGTCTCAAGCATCGAACATCGACAAAATGTTGATTCGATATAAGATGCAGGACT
CCAAGAAAGGATTATTACCTTTCAGGCATGGAGTTCATTTGTCGAAGGAACAAAGTCCTAAGACACCTCAAGAAGTTGAGGATATGAAACACATTCCCTATGCATCAGCG
GTCGGTAGTCTGATGTATGCCATGCTTTGTACCCGACCCGACATATGCTATGTTGTGGGAATTGTCAGCAGATATCAGTCCAATCCGGGACGTGCTCATTGGACTGCCGT
TAAGAATATCCTCAAGTATCTTAGGAGAACGAGGGACTATATGCTAATGTACGGTGCTAAGGATCTGATCCTTACAGGGTACACTGACTCAGATTTTCAGACGGATGTTG
ATTCGAGGAAATCGACATCAAGATCTGTCTTCACTCTGAACGGAGGAGCAATAATATGGAGAAGCATAAAGCAAGGTTGCATTGCTGATTCCACCATGGAGGCTGAGTAT
GTTGCTGCTTGTGAAGCAGCGAAAGAATCTGTATGGCTTAGGAAGTTCTTAACTGATTTGGAAGTCGTTCCAAATATGCATCTTCCCGTCACTCTTTATTGTGATAACAG
TGGAGCAGTTGCAAATTCAAAAGAACCAAGAAGCCATAAGCGAGGAAAACATATTGAACGCAAATATCATCTCATAAGGGAGATTGTGCAACGAGGAGATGTGATCGTCA
CACAGATAGCTTCAGAGCACAACATTGCTGATCCATTTACAAAGCCCCTCACGGCTAAAGTGTTTGAAGGGCACCTAGTGAGTCTAGGACTACGAGTTATGTAA
Protein sequenceShow/hide protein sequence
MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTKECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPYFSLR
HEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKGQTGEANVAISKKLLRGSSSK
NKSGPSTSKGVLMKKKGKGKNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLVEKKAEKTQQGYRTKETLELVHTDLCGPMNVKARGGYEYFISFIDDYSRYGYLY
LMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVKTATYILNMVPTK
SVSETPYELWKGRKETQVIIPDDGVEDPLTYKQAMNDEDRDQWIKAMNLEMESMYFNSVWELVNQPDGVKPIGCKWIYKRKRDQTGKVQTFKARLVAKDYTQREGVDYEE
TFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMAQPEGFIEQDHEQRVCKLKRSIYGLKQASRSWNIKFDTAIKSYGFKQNVDEPCVYKRIVNSTVAF
LVLYVDDILLIGNDVGILTDIKHWLATQFQMKDLGEAQFVLGIQIVRNRKNKTLALSQASNIDKMLIRYKMQDSKKGLLPFRHGVHLSKEQSPKTPQEVEDMKHIPYASA
VGSLMYAMLCTRPDICYVVGIVSRYQSNPGRAHWTAVKNILKYLRRTRDYMLMYGAKDLILTGYTDSDFQTDVDSRKSTSRSVFTLNGGAIIWRSIKQGCIADSTMEAEY
VAACEAAKESVWLRKFLTDLEVVPNMHLPVTLYCDNSGAVANSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTQIASEHNIADPFTKPLTAKVFEGHLVSLGLRVM