CuGenDBv2

Gene ID	CmoCh20G011650
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	zinc finger CCCH domain-containing protein 62-like
Genome location	Cmo_Chr20:11472942..11476433
RNA-Seq Expression	CmoCh20G011650
Synteny	CmoCh20G011650
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0044260 - cellular macromolecule metabolic process (biological process)
InterPro domains	IPR003034 - SAP domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6571408.1 Zinc finger CCCH domain-containing protein 62, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-149

98.93

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Query:  MPERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKD
        MPERGSKRRVIYLSSSSEEDEEESDDEEGE EEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTL+DCKAYLRENRLRIAGTKAVCIQRVLEHWRMKD
Subjt:  MPERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKD

Query:  GNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRT
        GNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRT
Subjt:  GNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRT

Query:  FRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA
        FRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRK+VQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA
Subjt:  FRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA

XP_022927980.1 zinc finger CCCH domain-containing protein 62-like [Cucurbita moschata]

2.0e-152

100

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Query:  MPERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKD
        MPERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKD
Subjt:  MPERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKD

Query:  GNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRT
        GNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRT
Subjt:  GNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRT

Query:  FRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA
        FRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA
Subjt:  FRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA

XP_022971662.1 zinc finger CCCH domain-containing protein 62 isoform X1 [Cucurbita maxima]

7.0e-142

92.01

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Query:  MPERGSKRRVIYLSSSSEEDEEES-------DDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVL
        MPERGSKRRV+YL SSSE+DEEES       DD+EGE E+EFDNECSDNDCDE+LSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQR+ 
Subjt:  MPERGSKRRVIYLSSSSEEDEEES-------DDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVL

Query:  EHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGR
        EHWRMKDGNGE HYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGR
Subjt:  EHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGR

Query:  NLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA
        NLYKLRTFRRLWNDEAER+QVLAEKHKRGAAARGVRALQKRKRKL+Q+GGSGKNQG  QLPRQA NSNGSRKSMRSRDKNNAVRRHPA
Subjt:  NLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA

XP_023512636.1 zinc finger CCCH domain-containing protein 62 [Cucurbita pepo subsp. pepo]

1.4e-142

93.08

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Query:  MPERGSKRRVIYLSSSSEEDEEE--------SDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRV
        MPERGSKRRVIYLSSSSEED+EE         DD+EGE EEEFDN CSDNDCDE+LSQRVIRFLKENKNLDSLTL+DCKAYLRENRLRIAGTKAVCIQR+
Subjt:  MPERGSKRRVIYLSSSSEEDEEE--------SDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRV

Query:  LEHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKG
         EHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWS GVRKLPPLYPLLVKG
Subjt:  LEHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKG

Query:  RNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA
        RNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQ+GGSGKNQGHVQLPRQA NSNGSRKSMRSRDKNNAVRRHPA
Subjt:  RNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA

XP_038902878.1 zinc finger CCCH domain-containing protein 62-like [Benincasa hispida]

1.8e-118

88.03

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Query:  SEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNC
        SEE+ +  DD EGE EEEFDNE SDNDCDE+LS+RVIRFLKENKNLDSLTL+DCKAYLRENRLRIAGTKAVCIQRV EHWRMKDGNGEAHYPRSSFVVNC
Subjt:  SEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNC

Query:  TGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLA
        TGDVCRGDTVLFTQKVYAKFDKVTR GGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLA
Subjt:  TGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLA

Query:  EKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNA
        EKHKRGAAARG+RA+QK+KRK  Q  G  KNQGHV L RQ  NS  SRK M SRD NNA
Subjt:  EKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNA

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E1S9 zinc finger CCCH domain-containing protein 62-like isoform X1

4.6e-115

75.16

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Query:  MPERGSKRRVIYLSSSSEEDEEES-----------------------------DDEEGEWEEEFDNECSDNDCDE-LLSQRVIRFLKENKNLDSLTLHDC
        M +RGSKR VI +SSSS++DEEES                             DD+EGE  EEFD+E SDN CDE +LS+RVIRFLKENKNLDSLTL+DC
Subjt:  MPERGSKRRVIYLSSSSEEDEEES-----------------------------DDEEGEWEEEFDNECSDNDCDE-LLSQRVIRFLKENKNLDSLTLHDC

Query:  KAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFT
        KAYLRENRLRIAGTKAVCIQRV EHWR+KDGNGE  YPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTR GGLIGKRTVAGRVVKESYGASKQQHTFT
Subjt:  KAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFT

Query:  VEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSR
        VEVLW RGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKH+RGAAAR +RA+QK+KRK++Q  G  KNQGHV L RQ   S   R+ M SR
Subjt:  VEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSR

Query:  DKNNAV
        D NNA+
Subjt:  DKNNAV

A0A1S4E1T3 zinc finger CCCH domain-containing protein 62-like isoform X3

7.8e-115

75.24

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Query:  MPERGSKRRVIYLSSSSEEDEEES-----------------------------DDEEGEWEEEFDNECSDNDCDE-LLSQRVIRFLKENKNLDSLTLHDC
        M +RGSKR VI +SSSS++DEEES                             DD+EGE  EEFD+E SDN CDE +LS+RVIRFLKENKNLDSLTL+DC
Subjt:  MPERGSKRRVIYLSSSSEEDEEES-----------------------------DDEEGEWEEEFDNECSDNDCDE-LLSQRVIRFLKENKNLDSLTLHDC

Query:  KAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFT
        KAYLRENRLRIAGTKAVCIQRV EHWR+KDGNGE  YPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTR GGLIGKRTVAGRVVKESYGASKQQHTFT
Subjt:  KAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFT

Query:  VEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSR
        VEVLW RGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKH+RGAAAR +RA+QK+KRK++Q  G  KNQGHV L RQ   S   R+ M SR
Subjt:  VEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSR

Query:  DKNNAVR
        D NNA R
Subjt:  DKNNAVR

A0A5A7TS31 Zinc finger CCCH domain-containing protein 62-like isoform X1

7.8e-115

75.24

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Query:  MPERGSKRRVIYLSSSSEEDEEES-----------------------------DDEEGEWEEEFDNECSDNDCDE-LLSQRVIRFLKENKNLDSLTLHDC
        M +RGSKR VI +SSSS++DEEES                             DD+EGE  EEFD+E SDN CDE +LS+RVIRFLKENKNLDSLTL+DC
Subjt:  MPERGSKRRVIYLSSSSEEDEEES-----------------------------DDEEGEWEEEFDNECSDNDCDE-LLSQRVIRFLKENKNLDSLTLHDC

Query:  KAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFT
        KAYLRENRLRIAGTKAVCIQRV EHWR+KDGNGE  YPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTR GGLIGKRTVAGRVVKESYGASKQQHTFT
Subjt:  KAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFT

Query:  VEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSR
        VEVLW RGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKH+RGAAAR +RA+QK+KRK++Q  G  KNQGHV L RQ   S   R+ M SR
Subjt:  VEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSR

Query:  DKNNAVR
        D NNA R
Subjt:  DKNNAVR

A0A6J1EQD5 zinc finger CCCH domain-containing protein 62-like

9.5e-153

100

Show/hide

Query:  MPERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKD
        MPERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKD
Subjt:  MPERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKD

Query:  GNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRT
        GNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRT
Subjt:  GNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRT

Query:  FRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA
        FRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA
Subjt:  FRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA

A0A6J1I2K8 zinc finger CCCH domain-containing protein 62 isoform X1

3.4e-142

92.01

Show/hide

Query:  MPERGSKRRVIYLSSSSEEDEEES-------DDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVL
        MPERGSKRRV+YL SSSE+DEEES       DD+EGE E+EFDNECSDNDCDE+LSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQR+ 
Subjt:  MPERGSKRRVIYLSSSSEEDEEES-------DDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVL

Query:  EHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGR
        EHWRMKDGNGE HYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGR
Subjt:  EHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGR

Query:  NLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA
        NLYKLRTFRRLWNDEAER+QVLAEKHKRGAAARGVRALQKRKRKL+Q+GGSGKNQG  QLPRQA NSNGSRKSMRSRDKNNAVRRHPA
Subjt:  NLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA

SwissProt top hits

e value

%identity

Alignment

Q338N2 Zinc finger CCCH domain-containing protein 62

1.2e-40

35.85

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Query:  ERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECS------------------------DNDCDELLSQRVIRF-----------------------
        E GS+  V        +DEEE + E  +W EE D E +                        D + D +L  R+ R                        
Subjt:  ERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECS------------------------DNDCDELLSQRVIRF-----------------------

Query:  -------LKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTR--RGGLI
               L  +  L+ L +++CKAYLR ++LR++G K V + R+     +K   GE  YP SSFV+NC GD C+GD V+F Q +Y +     R  +G L 
Subjt:  -------LKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTR--RGGLI

Query:  GKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGK
        G+RT AGR++KESYG  KQQHTFT+E+LWSRG +  PPL+PLL+KGRNLYK +T R+ W DE ER + L EKH RG  AR  R ++ + ++  +M    +
Subjt:  GKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGK

Query:  NQGHVQLPRQASNSNGSR
        N+ +    +   N   S+
Subjt:  NQGHVQLPRQASNSNGSR

Arabidopsis top hits

e value

%identity

Alignment

AT5G66840.1 SAP domain-containing protein

7.8e-67

49.47

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Query:  YLSSSSEEDEE-ESDDEEGEWEEEFDNEC-SDNDCDEL----------LSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMK
        Y  +  EEDE+  S +++ +W  + D+   SD + DE+             +V R L    +L S+ + +CKAYLR++ LR++GTK VCI R+LEHWR+K
Subjt:  YLSSSSEEDEE-ESDDEEGEWEEEFDNEC-SDNDCDEL----------LSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMK

Query:  DGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLR
        DG GEA YP+SSF +NC GDVC+GD VLFTQKV+ K++K+ + G ++G+RTVAG+VVKESYG +KQQHTFT+EVLW  G +KLPPLYPLLVKGRNLY+L 
Subjt:  DGNGEAHYPRSSFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLR

Query:  TFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQA-SNSNGSRKSMRSRDKNNAVRRH
        T R+ W +E +RV+VL EKH RGAAAR V   +K K   V   G  +  GHV+ P Q  +  N   +++  R + N    H
Subjt:  TFRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQA-SNSNGSRKSMRSRDKNNAVRRH

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCTGAAAGGGGTAGCAAACGAAGAGTTATTTATCTCTCCTCGTCGTCGGAGGAGGACGAAGAGGAATCAGACGATGAGGAAGGGGAATGGGAAGAGGAGTTTGATAA
TGAATGCAGCGACAACGATTGTGATGAACTTCTCTCCCAGCGAGTCATCCGCTTTCTTAAAGAGAATAAAAATTTAGATTCGTTAACACTTCATGATTGCAAAGCTTATT
TACGGGAGAATAGGCTAAGAATAGCGGGGACTAAAGCCGTCTGTATTCAAAGAGTCCTGGAACATTGGAGGATGAAGGATGGAAATGGTGAAGCGCACTATCCAAGGTCA
TCCTTTGTTGTCAATTGTACTGGTGATGTTTGTAGGGGAGATACTGTTTTGTTCACTCAGAAAGTTTATGCAAAGTTTGATAAAGTAACTAGGCGTGGAGGGCTTATAGG
GAAGAGAACTGTGGCAGGGAGGGTAGTGAAGGAAAGCTATGGTGCAAGTAAACAGCAGCATACTTTTACTGTTGAAGTTCTATGGAGCAGGGGAGTTCGGAAGTTACCCC
CACTTTATCCTCTACTTGTTAAGGGTCGAAATCTCTATAAACTAAGAACATTCAGACGGCTTTGGAATGATGAAGCTGAAAGAGTTCAGGTTCTAGCAGAGAAGCACAAA
AGAGGTGCGGCTGCTCGGGGTGTACGAGCATTGCAGAAAAGGAAAAGAAAACTTGTACAAATGGGAGGAAGTGGAAAGAATCAAGGACATGTTCAACTTCCAAGACAAGC
CTCGAACAGTAACGGGAGTCGCAAGAGTATGCGTTCAAGGGACAAGAACAATGCTGTTCGTAGGCACCCAGCGTAG

mRNA sequence

Show/hide mRNA sequence

AGGAAATGCCTGAAAGGGGTAGCAAACGAAGAGTTATTTATCTCTCCTCGTCGTCGGAGGAGGACGAAGAGGAATCAGACGATGAGGAAGGGGAATGGGAAGAGGAGTTT
GATAATGAATGCAGCGACAACGATTGTGATGAACTTCTCTCCCAGCGAGTCATCCGCTTTCTTAAAGAGAATAAAAATTTAGATTCGTTAACACTTCATGATTGCAAAGC
TTATTTACGGGAGAATAGGCTAAGAATAGCGGGGACTAAAGCCGTCTGTATTCAAAGAGTCCTGGAACATTGGAGGATGAAGGATGGAAATGGTGAAGCGCACTATCCAA
GGTCATCCTTTGTTGTCAATTGTACTGGTGATGTTTGTAGGGGAGATACTGTTTTGTTCACTCAGAAAGTTTATGCAAAGTTTGATAAAGTAACTAGGCGTGGAGGGCTT
ATAGGGAAGAGAACTGTGGCAGGGAGGGTAGTGAAGGAAAGCTATGGTGCAAGTAAACAGCAGCATACTTTTACTGTTGAAGTTCTATGGAGCAGGGGAGTTCGGAAGTT
ACCCCCACTTTATCCTCTACTTGTTAAGGGTCGAAATCTCTATAAACTAAGAACATTCAGACGGCTTTGGAATGATGAAGCTGAAAGAGTTCAGGTTCTAGCAGAGAAGC
ACAAAAGAGGTGCGGCTGCTCGGGGTGTACGAGCATTGCAGAAAAGGAAAAGAAAACTTGTACAAATGGGAGGAAGTGGAAAGAATCAAGGACATGTTCAACTTCCAAGA
CAAGCCTCGAACAGTAACGGGAGTCGCAAGAGTATGCGTTCAAGGGACAAGAACAATGCTGTTCGTAGGCACCCAGCGTAGGAAGACAGAATGGACATCGAAAAATATAG
TGGTCTGCTCTTGAGCTCACAAATGGCCTTTGAACTTGCGTTACAAATTGCTCTTTTAAGTTTGAAAAGGAATCAGTGAATAACTATTCAAATAATGTAACCAAAATTGA
CTTCAAAGTAGCAGGAAAAGTCAAAACAGGCATTTAGGTTCATTTGTAAATGTAATTAGCCTTTACTTTCACGATATCTTGTGATAAAATAAGGTTTTAAATGAATTTAA
CTAGATATCTCATATATTAAATTCATATTATGTTTT

Protein sequence

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MPERGSKRRVIYLSSSSEEDEEESDDEEGEWEEEFDNECSDNDCDELLSQRVIRFLKENKNLDSLTLHDCKAYLRENRLRIAGTKAVCIQRVLEHWRMKDGNGEAHYPRS
SFVVNCTGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRLWNDEAERVQVLAEKHK
RGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA

CmoCh20G011650 (gene) of Cucurbita moschata (Rifu) v1 genome