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Cp4.1LG01g02240 (gene) of Cucurbita pepo (MU-CU-16) v4.1 genome

Gene IDCp4.1LG01g02240
OrganismCucurbita pepo var. pepo MU-CU-16 (Cucurbita pepo (MU-CU-16) v4.1)
DescriptionDNA repair and recombination protein RAD54-like isoform 1
Genome locationCp4.1LG01:2559117..2560048
RNA-Seq ExpressionCp4.1LG01g02240
SyntenyCp4.1LG01g02240
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600329.1 hypothetical protein SDJN03_05562, partial [Cucurbita argyrosperma subsp. sororia]1.75e-9498.63Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLTKTYWKE
        MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLK+SSRNLLVKTTLRDELQVNEDDDEEEE DVSFPKLTKTYWKE
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLTKTYWKE

Query:  KFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG
        KFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG
Subjt:  KFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNG

XP_022942817.1 uncharacterized protein LOC111447733 [Cucurbita moschata]2.57e-10398.73Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLTKTYWKE
        MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLK+SSRNLLVKTTLRDELQVNEDDDEEEE DVSFPKLTKTYWKE
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLTKTYWKE

Query:  KFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR
        KFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR
Subjt:  KFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR

XP_022983127.1 uncharacterized protein LOC111481767 [Cucurbita maxima]3.51e-10196.82Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLTKTYWKE
        MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLK+SSRNLLVKTTLRDELQVNEDDDEEE  DVSFPKLTKTYWKE
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLTKTYWKE

Query:  KFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR
        KFGFRRSHFVS+KQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKA SQR
Subjt:  KFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR

XP_023516088.1 uncharacterized protein LOC111780054 [Cucurbita pepo subsp. pepo]3.37e-106100Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLTKTYWKE
        MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLTKTYWKE
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLTKTYWKE

Query:  KFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR
        KFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR
Subjt:  KFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR

XP_038877999.1 uncharacterized protein LOC120070205 [Benincasa hispida]3.47e-8483.44Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRN--LLVKTTLRDELQVNEDDDEEEEEDVSFPKLTK---
        MDPRISFSNDFVET+  LK+ENIYREAPVSSDFEFSVK+RCMI+ADEIF QG+LLPLK+SSRN  LLVKTTLRDELQVNE+DDEE+E  VSFPK TK   
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRN--LLVKTTLRDELQVNEDDDEEEEEDVSFPKLTK---

Query:  -TYWKEKFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR
         + WKEKFGFRRSHFV +KQ RNEGVLKTVEEE+K+SVFLHEDLINIARKNGNCYLKKANSQR
Subjt:  -TYWKEKFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR

TrEMBL top hitse value%identityAlignment
A0A0A0L727 Uncharacterized protein6.67e-8180.86Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRN-LLVKTTLRDELQVNEDDDEEEEEDVSFPKLTK----
        MDPRISFSNDFVET+ PLKLENIYREAPVSSDFEFSVKDRCMI+ADEIF QG+LLPLK+S RN +LVKTTLRDELQVNE     EE+D SFPK TK    
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRN-LLVKTTLRDELQVNEDDDEEEEEDVSFPKLTK----

Query:  TYWKEKFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR
        + WKEKFGFR+SHFV++KQ RNE VLKTVEEED++SVFLHEDLINIARKNG CYLKKANSQR
Subjt:  TYWKEKFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR

A0A1S3C2L8 uncharacterized protein LOC1034961601.34e-8080.25Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRN-LLVKTTLRDELQVNEDDDEEEEEDVSFPKLTK----
        MDPRISFSNDFVET+ PLKLENIYREAPVSSDFEFSVKDRCMI+ADEIF QG+LLPLK+S RN +LVKTTLRDELQVNE     EE+D+SFPK TK    
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRN-LLVKTTLRDELQVNEDDDEEEEEDVSFPKLTK----

Query:  TYWKEKFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR
        + WKEKFGFR+ HFV++KQ RNE VLKTVEEED++SVFLHEDLINIARKNG CYLKKANSQR
Subjt:  TYWKEKFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR

A0A6J1D6D4 uncharacterized protein LOC1110177345.27e-7578.12Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLTKTY---
        MDPRISFSNDF+ETQ PLKLENIYREAPVSSDFEF+VKDR MI ADEIF QGRLLPLK+SSR    KTTLRDEL+VNEDDD  + E  SFPKLTK+    
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLTKTY---

Query:  WKEKFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR
        W+E+FGFRRSH   +KQ R+EGVLKTV EE+K+SVFLHEDLINIARKNGNCYLKKAN QR
Subjt:  WKEKFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR

A0A6J1FRB6 uncharacterized protein LOC1114477331.24e-10398.73Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLTKTYWKE
        MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLK+SSRNLLVKTTLRDELQVNEDDDEEEE DVSFPKLTKTYWKE
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLTKTYWKE

Query:  KFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR
        KFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR
Subjt:  KFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR

A0A6J1IYE6 uncharacterized protein LOC1114817671.70e-10196.82Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLTKTYWKE
        MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLK+SSRNLLVKTTLRDELQVNEDDDEEE  DVSFPKLTKTYWKE
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLTKTYWKE

Query:  KFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR
        KFGFRRSHFVS+KQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKA SQR
Subjt:  KFGFRRSHFVSRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G05980.1 unknown protein1.4e-0427.88Show/hide
Query:  MDPRISFSN------DFVETQLPLKLENIYREAPVSSDFEF----SVKDRCMIAADEIFCQGRLLPL-----KESSRNLLVKTTLRDELQVNEDDDEEEE
        + PRISFS+      DF+     +  E++ + +   SDFEF    +V  + M+ ADE+F +G+LLP       E  +N+ +KT   +E +  + + ++++
Subjt:  MDPRISFSN------DFVETQLPLKLENIYREAPVSSDFEF----SVKDRCMIAADEIFCQGRLLPL-----KESSRNLLVKTTLRDELQVNEDDDEEEE

Query:  EDVS
        ++++
Subjt:  EDVS

AT3G19200.1 unknown protein1.7e-1035.51Show/hide
Query:  MDPRISFSNDFVETQLPLKLENI-----YREAPVSSDFEFSVKD-RCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLT
        +D RISFSNDF ++              Y+EAPVSSDF+F+V++     AADEIF  G LLPL+++++  +  TTLRDEL   + D       +S  K +
Subjt:  MDPRISFSNDFVETQLPLKLENI-----YREAPVSSDFEFSVKD-RCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLT

Query:  KTYWKEKFGFRRSHFVSRKQ----HRNEGVLKTVEEED
        + +W  K G  +S  +        H+++  L ++ E D
Subjt:  KTYWKEKFGFRRSHFVSRKQ----HRNEGVLKTVEEED

AT3G50640.1 unknown protein3.4e-1139.1Show/hide
Query:  RISFSNDFVETQLP---LKLENIYREAPV---SSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKL----
        RISFSN+FVE +      K  NI   +     S+DF FSV D  MI ADEIF +G++LP KE+S    V  TL +EL   E+    +    S   +    
Subjt:  RISFSNDFVETQLP---LKLENIYREAPV---SSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKL----

Query:  ----TKTYWKEKFGFRRSHFVSRKQHR-NEGVL
            TK  W+E  G +R+H  S+K  + NE VL
Subjt:  ----TKTYWKEKFGFRRSHFVSRKQHR-NEGVL

AT4G34419.1 unknown protein6.9e-1241.88Show/hide
Query:  DPRISFSNDFVETQLPLKLENI-YREAPVSS-DFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLTKTYWK
        +PRISFS+ F  T    K E I Y+EAPVSS DFEF V++  M  ADEIF  G +LPLKE        +TLR+EL      +E+ +   S  K +  +W+
Subjt:  DPRISFSNDFVETQLPLKLENI-YREAPVSS-DFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLTKTYWK

Query:  EKFGFRRSHFVSRKQHR
        E+ G   +   S+K H+
Subjt:  EKFGFRRSHFVSRKQHR

AT5G66800.1 unknown protein3.1e-1236.03Show/hide
Query:  MDPRISFSNDFVETQLPLKLENIYREAPV----------SSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSF
        M PRISFSNDFVE  +  +     R +P+          S +FEFSV +  M+ ADE+F +G+LLP KE+++   V+ TLR+EL V ED++E   +  + 
Subjt:  MDPRISFSNDFVETQLPLKLENIYREAPV----------SSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSF

Query:  PKL--------------TKTYWKEKFGFRRSHFVSR
          L              +K  WK   G +R+H  S+
Subjt:  PKL--------------TKTYWKEKFGFRRSHFVSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCAAGAATTTCGTTTTCAAATGATTTTGTTGAGACACAGCTGCCATTGAAGCTTGAGAACATCTACAGGGAAGCACCAGTTTCTTCTGATTTTGAGTTCAGTGT
TAAGGACAGATGTATGATTGCAGCAGATGAGATTTTCTGTCAGGGGAGGCTGCTGCCATTGAAGGAGAGTTCAAGGAACCTTTTGGTGAAGACAACTTTAAGAGATGAGT
TGCAAGTGAATGAAGATGATGATGAAGAAGAAGAAGAAGATGTTTCATTTCCAAAGCTAACAAAAACTTACTGGAAGGAGAAGTTTGGGTTCAGAAGATCCCATTTTGTT
TCCAGGAAACAGCATAGAAATGAAGGGGTTTTGAAAACTGTGGAAGAGGAAGATAAAAGCTCTGTTTTTCTTCATGAGGATCTCATAAATATTGCAAGAAAAAATGGGAA
CTGTTACTTGAAGAAAGCAAACTCACAGAGATGA
mRNA sequenceShow/hide mRNA sequence
TGGCCCAAGGCAAGTGGCAAAGAAAATGACCCAAAAAGAGAGAATCATATCATCCATTCAGTGAAAGAAACTCAAAAAGAGCAGCAACCCTTTTGAGCTGATTCCTCCAT
GGATCCAAGAATTTCGTTTTCAAATGATTTTGTTGAGACACAGCTGCCATTGAAGCTTGAGAACATCTACAGGGAAGCACCAGTTTCTTCTGATTTTGAGTTCAGTGTTA
AGGACAGATGTATGATTGCAGCAGATGAGATTTTCTGTCAGGGGAGGCTGCTGCCATTGAAGGAGAGTTCAAGGAACCTTTTGGTGAAGACAACTTTAAGAGATGAGTTG
CAAGTGAATGAAGATGATGATGAAGAAGAAGAAGAAGATGTTTCATTTCCAAAGCTAACAAAAACTTACTGGAAGGAGAAGTTTGGGTTCAGAAGATCCCATTTTGTTTC
CAGGAAACAGCATAGAAATGAAGGGGTTTTGAAAACTGTGGAAGAGGAAGATAAAAGCTCTGTTTTTCTTCATGAGGATCTCATAAATATTGCAAGAAAAAATGGGAACT
GTTACTTGAAGAAAGCAAACTCACAGAGATGATGATCATATCTAATGTAAAGCAGAAGATTACAAGTTTTTTTGTTCAGAAGTGTTGTGATTTTCAAGCAAGAAGCCTGT
TGGGGGCAACTGGTTCAGAAACAGAGAGGCTTTTGCTTTTCCTTTTCCATCACTTTTCTTATGAACTCTAACTTTCTCTCTTTTATTTGTATAAAAAAAAAGCCTTAGAG
ATTTGATAATGTCTTATTTACTTGC
Protein sequenceShow/hide protein sequence
MDPRISFSNDFVETQLPLKLENIYREAPVSSDFEFSVKDRCMIAADEIFCQGRLLPLKESSRNLLVKTTLRDELQVNEDDDEEEEEDVSFPKLTKTYWKEKFGFRRSHFV
SRKQHRNEGVLKTVEEEDKSSVFLHEDLINIARKNGNCYLKKANSQR