CuGenDBv2

Gene ID	Cp4.1LG04g04470
Organism	Cucurbita pepo var. pepo MU-CU-16 (Cucurbita pepo (MU-CU-16) v4.1)
Description	Expansin
Genome location	Cp4.1LG04:6608027..6610799
RNA-Seq Expression	Cp4.1LG04g04470
Synteny	Cp4.1LG04g04470
Gene Ontology terms	GO:0009664 - plant-type cell wall organization (biological process) GO:0005576 - extracellular region (cellular component) GO:0016020 - membrane (cellular component)
InterPro domains	IPR002963 - Expansin IPR007117 - Expansin, cellulose-binding-like domain IPR036749 - Expansin, cellulose-binding-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6589073.1 Expansin-A16, partial [Cucurbita argyrosperma subsp. sororia]

1.24e-48

43.03

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Query:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA--------------------------------------------------------
        MAAFIAMIVYMVLLPTPNIFAAKD+EWKSATATYTKEIDGSI+A                                                        
Subjt:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA--------------------------------------------------------

Query:  ------------------------------------------------------------------------------------VAVKVKGSRTGWIPLA
                                                                                            VAVKVKGSRTGWIPLA
Subjt:  ------------------------------------------------------------------------------------VAVKVKGSRTGWIPLA

Query:  RNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
        RNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYG APGNWQFGQTFEGKQF
Subjt:  RNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF

KAG7022780.1 Expansin-A16, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.36e-54

48.43

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Query:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA--------------------------------------------------------
        MAAFIAMIVYMVLLPTPNIFAAKD+EWKSATATYTKEIDGSI+A                                                        
Subjt:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA--------------------------------------------------------

Query:  --------------------------------------------------------VAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGR
                                                                VAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGR
Subjt:  --------------------------------------------------------VAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGR

Query:  ALTSYGVAPGNWQFGQTFEGKQF
        ALTSYG APGNWQFGQTFEGKQF
Subjt:  ALTSYGVAPGNWQFGQTFEGKQF

XP_023529776.1 expansin-A16-like isoform X1 [Cucurbita pepo subsp. pepo]

4.07e-50

43.7

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Query:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIAV-------------------------------------------------------
        MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIAV                                                       
Subjt:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIAV-------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------AVKVKGSRTGWI
                                                                                                AVKVKGSRTGWI
Subjt:  ----------------------------------------------------------------------------------------AVKVKGSRTGWI

Query:  PLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
        PLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
Subjt:  PLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF

XP_023529777.1 expansin-A16-like isoform X2 [Cucurbita pepo subsp. pepo]

1.31e-50

44.22

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Query:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA--------------------------------------------------------
        MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA                                                        
Subjt:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA--------------------------------------------------------

Query:  ------------------------------------------------------------------------------------VAVKVKGSRTGWIPLA
                                                                                            VAVKVKGSRTGWIPLA
Subjt:  ------------------------------------------------------------------------------------VAVKVKGSRTGWIPLA

Query:  RNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
        RNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
Subjt:  RNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF

XP_023529778.1 expansin-A16-like isoform X3 [Cucurbita pepo subsp. pepo]

9.00e-51

44.4

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Query:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA--------------------------------------------------------
        MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA                                                        
Subjt:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA--------------------------------------------------------

Query:  -----------------------------------------------------------------------------------VAVKVKGSRTGWIPLAR
                                                                                           VAVKVKGSRTGWIPLAR
Subjt:  -----------------------------------------------------------------------------------VAVKVKGSRTGWIPLAR

Query:  NWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
        NWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
Subjt:  NWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C2I7 Expansin

1.83e-42

39.04

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Query:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA--------------------------------------------------------
        M AF+A+IV +VLL TPNI+ A DEEWKSATATY+KE DGSI+                                                         
Subjt:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA--------------------------------------------------------

Query:  ------------------------------------------------------------------------------------VAVKVKGSRTGWIPLA
                                                                                            VAVKVKGSRTGWIPLA
Subjt:  ------------------------------------------------------------------------------------VAVKVKGSRTGWIPLA

Query:  RNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
        RNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
Subjt:  RNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF

A0A6J1EK66 Expansin

7.06e-47

43.2

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Query:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA--------------------------------------------------------
        MAAFIAMIVYMVLLPTP  FAAKDEEWKSATATYTKEIDGSIIA                                                        
Subjt:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA--------------------------------------------------------

Query:  -----------------------------------------------------------------------------------VAVKVKGSRTGWIPLAR
                                                                                           VAVKVKGSRTGWIPLAR
Subjt:  -----------------------------------------------------------------------------------VAVKVKGSRTGWIPLAR

Query:  NWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
        NWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYG APGNWQFGQTFEGKQF
Subjt:  NWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF

A0A6J1EN81 Expansin

1.03e-46

43.03

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Query:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA--------------------------------------------------------
        MAAFIAMIVYMVLLPTP  FAAKDEEWKSATATYTKEIDGSIIA                                                        
Subjt:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA--------------------------------------------------------

Query:  ------------------------------------------------------------------------------------VAVKVKGSRTGWIPLA
                                                                                            VAVKVKGSRTGWIPLA
Subjt:  ------------------------------------------------------------------------------------VAVKVKGSRTGWIPLA

Query:  RNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
        RNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYG APGNWQFGQTFEGKQF
Subjt:  RNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF

A0A6J1GKZ4 Expansin

3.23e-43

38.65

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Query:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA--------------------------------------------------------
        MAAF+A++VY+VLL TPN+FAAKDEEWKSATATY+KE DGSI+                                                         
Subjt:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA--------------------------------------------------------

Query:  ------------------------------------------------------------------------------------VAVKVKGSRTGWIPLA
                                                                                            VAVKVKGSRTGWIP+A
Subjt:  ------------------------------------------------------------------------------------VAVKVKGSRTGWIPLA

Query:  RNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
        RNWGQNWQSNVNLHGQPLSFEVTSSSGR LTSY VAP NWQFGQTFEGKQF
Subjt:  RNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF

A0A6J1HX81 Expansin

1.61e-43

39.04

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Query:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA--------------------------------------------------------
        MAAF+A++VY+VLL TPN+FAAKDEEWKSATATY+KE DGSI+                                                         
Subjt:  MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIA--------------------------------------------------------

Query:  ------------------------------------------------------------------------------------VAVKVKGSRTGWIPLA
                                                                                            VAVKVKGSRTGWIPLA
Subjt:  ------------------------------------------------------------------------------------VAVKVKGSRTGWIPLA

Query:  RNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
        RNWGQNWQSNVNLHGQPLSFEVTSSSGR LTSY VAP NWQFGQTFEGKQF
Subjt:  RNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF

SwissProt top hits

e value

%identity

Alignment

A2Y5R6 Expansin-A4

1.2e-20

68.18

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Query:  AVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
        +V +KGSRTGW P++RNWGQNWQSN  L GQ LSF+VT+S GR +TS  VA   WQFGQTFEG QF
Subjt:  AVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF

Q0DHB7 Expansin-A4

1.2e-20

68.18

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Query:  AVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
        +V +KGSRTGW P++RNWGQNWQSN  L GQ LSF+VT+S GR +TS  VA   WQFGQTFEG QF
Subjt:  AVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF

Q69XV9 Expansin-A16

2.0e-23

67.12

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Query:  DGSIIAVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
        DG +   AVKVKGSRTGWIP+ RNWGQNWQ + +L GQPLSFEVT   GR + +Y VAP +W F QTFEGKQF
Subjt:  DGSIIAVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF

Q9M9P0 Expansin-A13

2.3e-22

63.51

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Query:  IDGSIIAVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
        + GS    AVK+KGSRTGW+P+ RNWGQNW  N +L  Q LSFEVTSS    +TSY V+P NW +GQTFEGKQF
Subjt:  IDGSIIAVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF

Q9SZM1 Expansin-A20

4.7e-20

59.46

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Query:  IDGSIIAVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
        +DG +  V VKVKG  T WIP+ARNWGQNW S+++L GQ LSFEVT   G+ + SY VAP  W+FG T++GKQF
Subjt:  IDGSIIAVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF

Arabidopsis top hits

e value

%identity

Alignment

AT2G39700.1 expansin A4

1.3e-20

65.67

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Query:  VAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
        V   VKGSRTGW+ L+RNWGQNWQSN  L GQ LSF VT S  R  TS+ + P NWQFGQTF GK F
Subjt:  VAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF

AT3G03220.1 expansin A13

1.6e-23

63.51

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Query:  IDGSIIAVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
        + GS    AVK+KGSRTGW+P+ RNWGQNW  N +L  Q LSFEVTSS    +TSY V+P NW +GQTFEGKQF
Subjt:  IDGSIIAVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF

AT3G55500.1 expansin A16

5.7e-21

69.84

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Query:  VKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
        VKGS+TGW+ L RNWGQNWQSN  L GQ LSF VTSS  R  TS+ +AP NWQFGQTF GK F
Subjt:  VKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF

AT4G38210.1 expansin A20

3.4e-21

59.46

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Query:  IDGSIIAVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
        +DG +  V VKVKG  T WIP+ARNWGQNW S+++L GQ LSFEVT   G+ + SY VAP  W+FG T++GKQF
Subjt:  IDGSIIAVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF

AT5G02260.1 expansin A9

2.8e-20

58.11

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Query:  IDGSIIAVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF
        + G+   + V VKGS T W+ L+RNWGQNWQSN  L GQ LSF V +S GR+ TS  +AP NWQFGQT+ GK F
Subjt:  IDGSIIAVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQF

Sequences

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CDS sequence

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ATGGCTGCATTTATAGCTATGATAGTCTACATGGTTCTTTTGCCAACACCCAACATCTTTGCGGCTAAGGATGAAGAGTGGAAATCTGCTACTGCAACATACACCAAAGA
AATAGATGGGTCAATCATTGCAGTGGCAGTGAAAGTGAAGGGATCAAGAACAGGATGGATACCTCTGGCAAGGAACTGGGGACAAAACTGGCAAAGCAATGTCAATCTTC
ATGGGCAACCTCTCTCTTTTGAAGTTACCTCTAGCAGTGGAAGAGCACTTACTTCCTATGGTGTTGCACCTGGAAACTGGCAGTTCGGGCAGACATTTGAAGGGAAACAA
TTTTGA

mRNA sequence

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ATACTGGAAACACATACCTGTTTCTATGGCTTTCCGCTCTGTATCTGCCGCCATCAACATAAAGCCTCGAACCCTTCTACCTCGATAACAGCAAAAAAAAATGAGGCTCC
TCCAAGTTCGCTTCTTTGAGCCACCACTCACGGCAGGGACAGGAAGATAAAGAACAGGAGGAGGCTGATGAACAATGTGCGTGTCTTTTCCTCTGCCTCGTTAAACGCGC
CACTAATGTGAACGAATAGCTACAATATTCGAAATTTGTCAAAAGTTTGTCGATTTTCTGAATAGAGATCCAGCAATCAGAGAAGCTCAGTTCATTTCAGCGACAAATTA
GGGGAATTTTGAAAAAAGAAAGCTGGGAAGTGTGTGGGTGTTTTCATAAAGGAAATATACCTCATTTTGAGCCCTCTCAGGATTCTTCTTCTTCAAGGCCTTGTACTCTT
CTGAATGAAATGGCTGCATTTATAGCTATGATAGTCTACATGGTTCTTTTGCCAACACCCAACATCTTTGCGGCTAAGGATGAAGAGTGGAAATCTGCTACTGCAACATA
CACCAAAGAAATAGATGGGTCAATCATTGCAGTGGCAGTGAAAGTGAAGGGATCAAGAACAGGATGGATACCTCTGGCAAGGAACTGGGGACAAAACTGGCAAAGCAATG
TCAATCTTCATGGGCAACCTCTCTCTTTTGAAGTTACCTCTAGCAGTGGAAGAGCACTTACTTCCTATGGTGTTGCACCTGGAAACTGGCAGTTCGGGCAGACATTTGAA
GGGAAACAATTTTGA

Protein sequence

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MAAFIAMIVYMVLLPTPNIFAAKDEEWKSATATYTKEIDGSIIAVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRALTSYGVAPGNWQFGQTFEGKQ
F

Cp4.1LG04g04470 (gene) of Cucurbita pepo (MU-CU-16) v4.1 genome