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Cp4.1LG06g04430 (gene) of Cucurbita pepo (MU-CU-16) v4.1 genome

Gene IDCp4.1LG06g04430
OrganismCucurbita pepo var. pepo MU-CU-16 (Cucurbita pepo (MU-CU-16) v4.1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCp4.1LG06:2359679..2359987
RNA-Seq ExpressionCp4.1LG06g04430
SyntenyCp4.1LG06g04430
Gene Ontology termsGO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022857 - transmembrane transporter activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3446462.1 hypothetical protein FNV43_RR11641 [Rhamnella rubrinervis]1.86e-2049.04Show/hide
Query:  MGIK-WRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPS-IVSRSF
        MGIK W  S SQSIRLGQ+   SN    +   GW+ +W+K K++K +    S V L++SY+PN Y  NF+Q    ++PD+L RSFSARFADP+ I   +F
Subjt:  MGIK-WRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPS-IVSRSF

Query:  RLLD
         LLD
Subjt:  RLLD

KAG6591653.1 hypothetical protein SDJN03_13999, partial [Cucurbita argyrosperma subsp. sororia]1.73e-6698.04Show/hide
Query:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
        MGIKWRNSRSQSIRLGQSCGS NEQESKRL GWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
Subjt:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL

Query:  LD
        LD
Subjt:  LD

KGN60340.2 hypothetical protein Csa_000895 [Cucumis sativus]4.40e-4884.31Show/hide
Query:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
        MG+KWRNSRSQSIRLGQSC SSNEQESKRL GWQILW+K KKEKR++FSCSSVELRSSYNPNAY LNF++ENW S+PD+L RSFSARFADPSIVSR+ RL
Subjt:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL

Query:  LD
        LD
Subjt:  LD

XP_022936244.1 uncharacterized protein LOC111442916 [Cucurbita moschata]1.48e-6799.02Show/hide
Query:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
        MGIKWRNSRSQSIRLGQSCGSSNEQESKRL GWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
Subjt:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL

Query:  LD
        LD
Subjt:  LD

XP_023536137.1 uncharacterized protein LOC111797385 [Cucurbita pepo subsp. pepo]3.62e-68100Show/hide
Query:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
        MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
Subjt:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL

Query:  LD
        LD
Subjt:  LD

TrEMBL top hitse value%identityAlignment
A0A0A0LJH9 Uncharacterized protein9.14e-5584.31Show/hide
Query:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
        MG+KWRNSRSQSIRLGQSC SSNEQESKRL GWQILW+K KKEKR++FSCSSVELRSSYNPNAY LNF++ENW S+PD+L RSFSARFADPSIVSR+ RL
Subjt:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL

Query:  LD
        LD
Subjt:  LD

A0A540LRN7 Uncharacterized protein3.04e-1948.62Show/hide
Query:  MGIK-WRNSRSQSIRLGQSC---GSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSV--ELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIV
        MGI+ WRNSRSQSIRLG +    G+ N+ ++    GWQ  W++FK E+++ F  S+V  + ++SY+P  Y  NF+Q     +PD+L RSFSARFADPS V
Subjt:  MGIK-WRNSRSQSIRLGQSC---GSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSV--ELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIV

Query:  SRSFR-LLD
            R LLD
Subjt:  SRSFR-LLD

A0A5N5HP14 Pentatricopeptide repeat-containing protein8.66e-1950.47Show/hide
Query:  MGIK-WRNSRSQSIRLGQSCGS-SNEQESKRLLGWQILWQKFKKEKRRIFSCSSV--ELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSR
        MGI+ WRNSRSQSIRLG +    SN  +S+   GWQ  W++FK E+++ F  S+V  + ++SY+P  Y  NF+Q     +PD+L RSFSARFADPS V  
Subjt:  MGIK-WRNSRSQSIRLGQSCGS-SNEQESKRLLGWQILWQKFKKEKRRIFSCSSV--ELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSR

Query:  SFR-LLD
          R LLD
Subjt:  SFR-LLD

A0A5N5I1S5 Pentatricopeptide repeat-containing protein5.30e-2051.4Show/hide
Query:  MGIK-WRNSRSQSIRLGQSCGS-SNEQESKRLLGWQILWQKFKKEKRRIFSCSSV--ELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSR
        MGI+ WRNSRSQSIRLG +    SN  +S+   GWQ  W++FK E+++IF  S+V  + ++SY+P+ Y  NF+Q     +PD+L RSFSARFADPS V  
Subjt:  MGIK-WRNSRSQSIRLGQSCGS-SNEQESKRLLGWQILWQKFKKEKRRIFSCSSV--ELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSR

Query:  SFR-LLD
          R LLD
Subjt:  SFR-LLD

A0A6J1F7R9 uncharacterized protein LOC1114429167.15e-6899.02Show/hide
Query:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
        MGIKWRNSRSQSIRLGQSCGSSNEQESKRL GWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL
Subjt:  MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRL

Query:  LD
        LD
Subjt:  LD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G25735.1 unknown protein6.9e-0536.89Show/hide
Query:  NSRSQSIRLGQSCGSSNEQES----KRLL-GWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQ-ENW--GSDPDDLCRSFSARFADPSIVSRSF
        +S  ++I LG+   S  EQ+     +RLL  W++L  K K    R  S   V    +Y P  Y LNF+Q   W    +P++L RSFS RFADP+ +  + 
Subjt:  NSRSQSIRLGQSCGSSNEQES----KRLL-GWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQ-ENW--GSDPDDLCRSFSARFADPSIVSRSF

Query:  RLL
         LL
Subjt:  RLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATCAAATGGCGCAATTCACGTAGCCAAAGCATCAGGTTAGGTCAAAGCTGTGGCTCTTCGAATGAACAAGAAAGCAAACGACTCCTCGGATGGCAGATTTTGTG
GCAGAAATTCAAGAAGGAGAAGAGAAGAATCTTCAGTTGTTCTTCAGTTGAATTGCGTTCTTCGTATAATCCAAATGCTTATCGGTTGAATTTTGAACAAGAAAATTGGG
GCTCTGATCCTGATGATCTCTGCAGATCCTTCTCTGCTCGTTTCGCTGATCCATCCATCGTCTCCAGGAGCTTCAGATTGTTGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAATCAAATGGCGCAATTCACGTAGCCAAAGCATCAGGTTAGGTCAAAGCTGTGGCTCTTCGAATGAACAAGAAAGCAAACGACTCCTCGGATGGCAGATTTTGTG
GCAGAAATTCAAGAAGGAGAAGAGAAGAATCTTCAGTTGTTCTTCAGTTGAATTGCGTTCTTCGTATAATCCAAATGCTTATCGGTTGAATTTTGAACAAGAAAATTGGG
GCTCTGATCCTGATGATCTCTGCAGATCCTTCTCTGCTCGTTTCGCTGATCCATCCATCGTCTCCAGGAGCTTCAGATTGTTGGATTGA
Protein sequenceShow/hide protein sequence
MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYNPNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD