CuGenDBv2

Gene ID	Cp4.1LG07g02230
Organism	Cucurbita pepo var. pepo MU-CU-16 (Cucurbita pepo (MU-CU-16) v4.1)
Description	Translation initiation factor IF-2
Genome location	Cp4.1LG07:1405571..1409019
RNA-Seq Expression	Cp4.1LG07g02230
Synteny	Cp4.1LG07g02230
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6585389.1 hypothetical protein SDJN03_18122, partial [Cucurbita argyrosperma subsp. sororia]

2.47e-124

98.99

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Query:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIF
        MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQK+DPPEEREPLRIF
Subjt:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIF

Query:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
        YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKK+RRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
Subjt:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM

KAG7020306.1 hypothetical protein SDJN02_16990, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.25e-123

98.99

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Query:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIF
        MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQK+DPPEEREPLRIF
Subjt:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIF

Query:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
        YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKK+RRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
Subjt:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM

XP_022951620.1 uncharacterized protein LOC111454380 isoform X1 [Cucurbita moschata]

1.17e-122

97.99

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Query:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIF
        MVSD KPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSV PKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQK+DPPEEREPLRIF
Subjt:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIF

Query:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
        YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKK+RRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
Subjt:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM

XP_023002565.1 uncharacterized protein LOC111496374 [Cucurbita maxima]

3.22e-120

96.48

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Query:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIF
        MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSV PKSEVKSKTITSSSKTTTKAT+STAKVREKKVFNLAGQK+DPPEEREPLRIF
Subjt:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIF

Query:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
        YESLSKQISTS MAEFWMMEHGMLSPEKAKKAYEKK+RRQKEQRTGTPIKSLKPPSRPESSQRPQQP KNGDLKAKKKITN+SDDDDNDFILSPKRRKM
Subjt:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM

XP_023536695.1 uncharacterized protein LOC111797995 isoform X1 [Cucurbita pepo subsp. pepo]

1.05e-125

100

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Query:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIF
        MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIF
Subjt:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIF

Query:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
        YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
Subjt:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LLY4 Uncharacterized protein

1.94e-90

79.43

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Query:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKN-----NSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTST---AKVREKKVFNLAGQKHDPPE
        MVSD K T+SK+K    DGGSRLKLESSD+KK       +S+ SSKHKSVS+  K+EVKSKTI+SSSKTTTK TT+T   AKVREKKVFNL GQK+DPPE
Subjt:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKN-----NSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTST---AKVREKKVFNLAGQKHDPPE

Query:  EREPLRIFYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSL--KPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDF
        EREPLRIFYESLSKQI  SEMAEFWMMEHGMLSPEKAKKAYEKK+RRQKEQRTGTPIKS   KP SRPESSQRPQ PSKNGD+KAKKKI N+SDDDD DF
Subjt:  EREPLRIFYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSL--KPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDF

Query:  ILSPKRRKM
        ILSPKRRKM
Subjt:  ILSPKRRKM

A0A1S3BCG5 uncharacterized protein LOC103488185 isoform X1

1.36e-90

79.43

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Query:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKN-----NSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTST---AKVREKKVFNLAGQKHDPPE
        MVSD K T+SK+K    DGGSRLKLESSD+KK       +S+ SSKHKSVS+  KSEVKSKTI+SSSKTTTK TT+T   AKVREKK+FNL GQK+DPPE
Subjt:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKN-----NSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTST---AKVREKKVFNLAGQKHDPPE

Query:  EREPLRIFYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSL--KPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDF
        EREPLRIFYESLSKQI  SEMAEFWMMEHGMLSPEKAKKAYEKK+RRQKEQRTGTPIKS   KP SRPESSQRPQ PSKNGD+KAKKKI N+SDDDD DF
Subjt:  EREPLRIFYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSL--KPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDF

Query:  ILSPKRRKM
        ILSPKRRKM
Subjt:  ILSPKRRKM

A0A6J1GJC9 uncharacterized protein LOC111454380 isoform X1

5.67e-123

97.99

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Query:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIF
        MVSD KPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSV PKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQK+DPPEEREPLRIF
Subjt:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIF

Query:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
        YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKK+RRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
Subjt:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM

A0A6J1K794 uncharacterized protein LOC111491788

1.45e-88

78.71

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Query:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTS--TAKVREKKVFNLAGQKHDPPEEREPLR
        MVS+ KPTVSK K G+QDGGSRLK++SS    N     SSKHKSVSV  KSEVKSKT +SSS+ TTK TT+  TAKVREKKV+NL GQK DPPEEREPLR
Subjt:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTS--TAKVREKKVFNLAGQKHDPPEEREPLR

Query:  IFYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKIT-NNSDDDDNDFILSPKRR
        IFYESLSKQI  SEMAEFWMMEHGMLSPEKAKKAYEKK+RRQKEQR+GTPIKS K  S+PESSQRPQQPSKNGDLKAK+K+T N+SDDDD++FILSPKRR
Subjt:  IFYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKIT-NNSDDDDNDFILSPKRR

Query:  KM
        KM
Subjt:  KM

A0A6J1KPA8 uncharacterized protein LOC111496374

1.56e-120

96.48

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Query:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIF
        MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSV PKSEVKSKTITSSSKTTTKAT+STAKVREKKVFNLAGQK+DPPEEREPLRIF
Subjt:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIF

Query:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
        YESLSKQISTS MAEFWMMEHGMLSPEKAKKAYEKK+RRQKEQRTGTPIKSLKPPSRPESSQRPQQP KNGDLKAKKKITN+SDDDDNDFILSPKRRKM
Subjt:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G19990.1 unknown protein

2.4e-17

39.02

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Query:  GHQDGGSRLKLESS-----DNKKNNSSVSSSKHKSV----------SVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRI
        G+  G  +LK E +     DNK   SSVS S+ K V             P S+  S    S      +      K RE+KV++L GQK + P+ER+PLRI
Subjt:  GHQDGGSRLKLESS-----DNKKNNSSVSSSKHKSV----------SVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRI

Query:  FYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPES--------------SQRPQQPSKNGDLK-AKKKITNNSD
        FYESL KQI TS+MA+ W+ME G+L  EKAKK  EKK+  QK  +  +P+KS     R  S              S+      K  D K   KK   NSD
Subjt:  FYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPES--------------SQRPQQPSKNGDLK-AKKKITNNSD

Query:  DDDND
        DDD+D
Subjt:  DDDND

AT5G11600.1 unknown protein

3.3e-35

49.51

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Query:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNS--SVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAK---VREKKVFNLAGQKHDPPEERE
        + + ++P +S  K          K E+      NS  +++++   +  V  K++  S  ++     TT AT S  K    REKKV++LAGQK DPPEERE
Subjt:  MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNS--SVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAK---VREKKVFNLAGQKHDPPEERE

Query:  PLRIFYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKP-PSRPESSQRPQQPSKNG-DLKAKKKITNNSDDDDNDFILS
        PLRIFYESLSKQI  SEMAEFW+MEHGMLSPEKAK+A+EKK R+ K+ R GTP KS     S+ ESSQR      NG D + KKK+ ++ DDDD+DFILS
Subjt:  PLRIFYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKP-PSRPESSQRPQQPSKNG-DLKAKKKITNNSDDDDNDFILS

Query:  PKRRKM
         KRRK+
Subjt:  PKRRKM

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTTTCAGACGCCAAACCCACTGTTTCGAAGGTCAAACTAGGTCATCAAGATGGCGGCTCCAGGTTAAAGCTCGAATCCTCCGACAACAAGAAGAACAACAGC
TCAGTTTCCTCTTCCAAACACAAATCCGTCTCTGTTTTTCCCAAATCCGAGGTGAAATCTAAAACAATAACGAGTTCTTCAAAGACCACAACAAAAGCTACTACT
TCTACTGCTAAAGTGAGAGAAAAGAAAGTGTTCAATTTGGCTGGTCAGAAACATGATCCACCTGAAGAGAGAGAGCCGCTTCGGATATTTTATGAATCCTTGTCG
AAACAGATATCAACAAGTGAAATGGCAGAATTTTGGATGATGGAGCATGGCATGTTATCTCCCGAAAAGGCGAAAAAGGCGTACGAGAAGAAAATGAGAAGACAA
AAGGAACAGAGGACCGGGACACCGATTAAATCATTAAAACCACCGAGCAGACCAGAGAGCTCACAGAGGCCACAGCAGCCATCGAAGAATGGCGATCTAAAAGCA
AAGAAAAAGATCACGAACAATAGCGATGACGACGACAATGACTTCATTTTAAGCCCCAAGAGAAGAAAAATGTAG

mRNA sequence

Show/hide mRNA sequence

GCAGGTTAAAACGAAAACAACCAATTTAATTGGCGGAATTTTGATACTTTTTGTTCACATTTATTTTTATTATCTTATTCTGAAGCAGCTCGAATGGATATATCT
TCAGCAGGAAGAAGAAGAAAAGGACAGTAAGAAGAAGAAGAACGAAGAAGACGAGAGGAAGAACAACATTGATTCTTTTGACAAAAATAGTCAAAATTATTAAGC
AAAAACAGAAGTCCATTATGGTTTCAGACGCCAAACCCACTGTTTCGAAGGTCAAACTAGGTCATCAAGATGGCGGCTCCAGGTTAAAGCTCGAATCCTCCGACA
ACAAGAAGAACAACAGCTCAGTTTCCTCTTCCAAACACAAATCCGTCTCTGTTTTTCCCAAATCCGAGGTGAAATCTAAAACAATAACGAGTTCTTCAAAGACCA
CAACAAAAGCTACTACTTCTACTGCTAAAGTGAGAGAAAAGAAAGTGTTCAATTTGGCTGGTCAGAAACATGATCCACCTGAAGAGAGAGAGCCGCTTCGGATAT
TTTATGAATCCTTGTCGAAACAGATATCAACAAGTGAAATGGCAGAATTTTGGATGATGGAGCATGGCATGTTATCTCCCGAAAAGGCGAAAAAGGCGTACGAGA
AGAAAATGAGAAGACAAAAGGAACAGAGGACCGGGACACCGATTAAATCATTAAAACCACCGAGCAGACCAGAGAGCTCACAGAGGCCACAGCAGCCATCGAAGA
ATGGCGATCTAAAAGCAAAGAAAAAGATCACGAACAATAGCGATGACGACGACAATGACTTCATTTTAAGCCCCAAGAGAAGAAAAATGTAGGAAAAACGCCTGC
CAACGCCCACCTCCCCCTCGTTTTTAGTAGCATACTTTTCGAAAACTACAGAGATTATCATAACCCAGTATTTATCAGGACATTCTTTTATGGTTCAAAACCTTC
TCATACAACGTGTAATTACTCGGGTCGAGTACGACACCCAATCAATAACTATGGACCCATCTGAGAAACTCGAGCCTAAATTTAAAGTAAACAAAACAGCATG

Protein sequence

Show/hide protein sequence

MVSDAKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVFPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKHDPPEEREPLRIFYESLS
KQISTSEMAEFWMMEHGMLSPEKAKKAYEKKMRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM

Cp4.1LG07g02230 (gene) of Cucurbita pepo (MU-CU-16) v4.1 genome