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Cp4.1LG07g06830 (gene) of Cucurbita pepo (MU-CU-16) v4.1 genome

Gene IDCp4.1LG07g06830
OrganismCucurbita pepo var. pepo MU-CU-16 (Cucurbita pepo (MU-CU-16) v4.1)
Descriptionhistone H2B.1-like isoform X2
Genome locationCp4.1LG07:5518397..5518714
RNA-Seq ExpressionCp4.1LG07g06830
SyntenyCp4.1LG07g06830
Gene Ontology termsGO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586013.1 Histone H2B.4, partial [Cucurbita argyrosperma subsp. sororia]2.26e-5897.98Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVV+GESQDVTQEPATAETGGDGVFRR IPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG

KAG7037380.1 Histone H2B.2, partial [Cucurbita argyrosperma subsp. argyrosperma]1.15e-5897.98Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVT+EPATAETGGDGVFRR IPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG

XP_022937552.1 histone H2B.6-like isoform X1 [Cucurbita moschata]1.81e-5797.98Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRR IPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKAR+G
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG

XP_022937553.1 histone H2B.1-like isoform X2 [Cucurbita moschata]1.00e-5797.98Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRR IPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKAR+G
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG

XP_023537504.1 histone H2B-like [Cucurbita pepo subsp. pepo]3.86e-59100Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG

TrEMBL top hitse value%identityAlignment
A0A0A0LSH9 Histone domain-containing protein1.20e-2762.04Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAET--GGDGVFRRNIPVED-------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGK
        MPPRRSRR+VGSVVRTTT+VVEETV VAVVE ESQD+TQEP  AET  GG  +FRR +PVE+       P + PV  D +L R  DSTS++TED  VT +
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAET--GGDGVFRRNIPVED-------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGK

Query:  MESKARNG
        ME K R G
Subjt:  MESKARNG

A0A6J1FBI7 histone H2B.6-like isoform X18.74e-5897.98Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRR IPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKAR+G
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG

A0A6J1FGB7 histone H2B.1-like isoform X24.85e-5897.98Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRR IPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKAR+G
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG

A0A6J1I190 histone H2B, gonadal-like isoform X14.43e-5392.93Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQD+TQEPATAETGGD VFRR I VEDP+TS VWGDVKLTRPVDSTSEVTEDKDVTGKMESK RNG
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG

A0A6J1I2V8 histone H2B.4-like isoform X22.27e-5392.93Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQD+TQEPATAETGGD VFRR I VEDP+TS VWGDVKLTRPVDSTSEVTEDKDVTGKMESK RNG
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGCCGAGGCGATCCCGTAGAATTGTCGGTTCTGTCGTCCGGACAACCACCAAGGTAGTGGAAGAAACTGTGCATGTGGCTGTGGTGGAGGGAGAGAGCCAGGATGT
TACTCAAGAGCCAGCAACGGCGGAAACCGGCGGCGATGGAGTGTTTCGGAGGAATATTCCGGTGGAAGACCCCCAAACTTCGCCGGTGTGGGGAGATGTCAAGCTGACAA
GGCCTGTAGATTCCACCTCAGAGGTCACGGAGGACAAGGATGTGACGGGGAAGATGGAATCTAAAGCCAGGAATGGTAGTAATTTAACATTACAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCGCCGAGGCGATCCCGTAGAATTGTCGGTTCTGTCGTCCGGACAACCACCAAGGTAGTGGAAGAAACTGTGCATGTGGCTGTGGTGGAGGGAGAGAGCCAGGATGT
TACTCAAGAGCCAGCAACGGCGGAAACCGGCGGCGATGGAGTGTTTCGGAGGAATATTCCGGTGGAAGACCCCCAAACTTCGCCGGTGTGGGGAGATGTCAAGCTGACAA
GGCCTGTAGATTCCACCTCAGAGGTCACGGAGGACAAGGATGTGACGGGGAAGATGGAATCTAAAGCCAGGAATGGTAGTAATTTAACATTACAATAA
Protein sequenceShow/hide protein sequence
MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRNIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNGSNLTLQ