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Cp4.1LG09g04470 (gene) of Cucurbita pepo (MU-CU-16) v4.1 genome

Gene IDCp4.1LG09g04470
OrganismCucurbita pepo var. pepo MU-CU-16 (Cucurbita pepo (MU-CU-16) v4.1)
Descriptionscarecrow-like protein 8
Genome locationCp4.1LG09:2871855..2872419
RNA-Seq ExpressionCp4.1LG09g04470
SyntenyCp4.1LG09g04470
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR005202 - Transcription factor GRAS


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605737.1 Scarecrow-like protein 8, partial [Cucurbita argyrosperma subsp. sororia]2.45e-2865.59Show/hide
Query:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
        ++G  KGKV++KL  VVAENGRDERLK   ESLS+LAKELG+GFKFN+VK E ++LTRESLGCD DESLAVNF FKL           NPRD+
Subjt:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
XP_022958035.1 scarecrow-like protein 8 [Cucurbita moschata]5.00e-2966.67Show/hide
Query:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
        ++G  KGKV++KL  VVAENGRDERLK   ESLS+LAKELG+GFKFN+VKQE ++LTRESLGCD DESLAVNF FKL           NPRD+
Subjt:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
XP_022995259.1 scarecrow-like protein 8 [Cucurbita maxima]3.92e-3068.82Show/hide
Query:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
        ++G  KGKV++KL  VVAENGRDERLKQ  ESLS+LAKELG+GFKFN+VK ELA LTRESLGCD DESLAVNF FKL           NPRD+
Subjt:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
XP_023524891.1 scarecrow-like protein 8 [Cucurbita pepo subsp. pepo]2.17e-2968.82Show/hide
Query:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
        ++G  KGKV +KL  VVAENGRDERLK   ESLS+LAKELG+GFKFNLVK ELA+LTRESLGCD DESLAVNF FKL           NPRD+
Subjt:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
XP_023534055.1 scarecrow-like protein 8 [Cucurbita pepo subsp. pepo]1.93e-2968.82Show/hide
Query:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
        ++G  KGKV +KL  VVAENGRDERLK   ESLS+LAKELG+GFKFNLVK ELA+LTRESLGCD DESLAVNF FKL           NPRD+
Subjt:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
TrEMBL top hitse value%identityAlignment
A0A0A0KK19 GRAS domain-containing protein4.79e-2358.06Show/hide
Query:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
        ++G  KGKV +KL  VV ENG DE LK   ESL++LA ELG+GF FN+V+ +LA+LTRESLGC+ DESLAVNF FKL           NPRD+
Subjt:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
A0A1S3AUC8 scarecrow-like protein 81.68e-2256.99Show/hide
Query:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
        ++G  KGKV +KL  VV ENG DE LK   ESL++LA ELG+GF FN+V+ +L++LTRESLGC+ DESLAVNF FKL           NPRD+
Subjt:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
A0A5A7TML4 Scarecrow-like protein 81.23e-2256.99Show/hide
Query:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
        ++G  KGKV +KL  VV ENG DE LK   ESL++LA ELG+GF FN+V+ +L++LTRESLGC+ DESLAVNF FKL           NPRD+
Subjt:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
A0A6J1H2B4 scarecrow-like protein 82.42e-2966.67Show/hide
Query:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
        ++G  KGKV++KL  VVAENGRDERLK   ESLS+LAKELG+GFKFN+VKQE ++LTRESLGCD DESLAVNF FKL           NPRD+
Subjt:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
A0A6J1K574 scarecrow-like protein 81.90e-3068.82Show/hide
Query:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
        ++G  KGKV++KL  VVAENGRDERLKQ  ESLS+LAKELG+GFKFN+VK ELA LTRESLGCD DESLAVNF FKL           NPRD+
Subjt:  ITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
SwissProt top hitse value%identityAlignment
Q9FYR7 Scarecrow-like protein 81.7e-0946.15Show/hide
Query:  VAENGRDERLKQASESLSELAKELGIGFKFNLVKQ-ELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
        + ++G +ERLK   + LS+L   LGI   FN+V    L  L RESLGCD DE+LAVN  FKL           NPRD+
Subjt:  VAENGRDERLKQASESLSELAKELGIGFKFNLVKQ-ELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
Arabidopsis top hitse value%identityAlignment
AT5G52510.1 SCARECROW-like 81.2e-1046.15Show/hide
Query:  VAENGRDERLKQASESLSELAKELGIGFKFNLVKQ-ELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK
        + ++G +ERLK   + LS+L   LGI   FN+V    L  L RESLGCD DE+LAVN  FKL           NPRD+
Subjt:  VAENGRDERLKQASESLSELAKELGIGFKFNLVKQ-ELAKLTRESLGCDGDESLAVNFVFKL-----------NPRDK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCTTGCGCCGGTGGTTAAGATTTCGAATGTGAGAGGTAGTTCTGTGCAGAAATTGGATGAATATGGTTTTCGCTTTGAAATCACGGGTCATCTGAAAGGGAAGGT
CATCATGAAATTGATGACAGTTGTGGCGGAGAACGGCAGAGACGAGAGGTTGAAACAAGCCAGCGAGTCACTGAGTGAACTAGCGAAAGAACTCGGCATCGGGTTCAAAT
TCAACTTGGTGAAACAGGAACTGGCAAAACTGACGCGCGAGTCACTCGGGTGCGATGGAGACGAATCACTAGCAGTGAATTTCGTTTTTAAGTTGAATCCTCGAGACAAG
AGTGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTCTTGCGCCGGTGGTTAAGATTTCGAATGTGAGAGGTAGTTCTGTGCAGAAATTGGATGAATATGGTTTTCGCTTTGAAATCACGGGTCATCTGAAAGGGAAGGT
CATCATGAAATTGATGACAGTTGTGGCGGAGAACGGCAGAGACGAGAGGTTGAAACAAGCCAGCGAGTCACTGAGTGAACTAGCGAAAGAACTCGGCATCGGGTTCAAAT
TCAACTTGGTGAAACAGGAACTGGCAAAACTGACGCGCGAGTCACTCGGGTGCGATGGAGACGAATCACTAGCAGTGAATTTCGTTTTTAAGTTGAATCCTCGAGACAAG
AGTGTGTAA
Protein sequenceShow/hide protein sequence
MILAPVVKISNVRGSSVQKLDEYGFRFEITGHLKGKVIMKLMTVVAENGRDERLKQASESLSELAKELGIGFKFNLVKQELAKLTRESLGCDGDESLAVNFVFKLNPRDK
SV