; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cp4.1LG09g04480 (gene) of Cucurbita pepo (MU-CU-16) v4.1 genome

Gene IDCp4.1LG09g04480
OrganismCucurbita pepo var. pepo MU-CU-16 (Cucurbita pepo (MU-CU-16) v4.1)
Descriptionprotein LATERAL ROOT PRIMORDIUM 1
Genome locationCp4.1LG09:2889169..2891188
RNA-Seq ExpressionCp4.1LG09g04480
SyntenyCp4.1LG09g04480
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009851 - auxin biosynthetic process (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006510 - Zinc finger, lateral root primordium type 1
IPR006511 - SHORT INTERNODES, C-terminal
IPR007818 - SHI protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573801.1 Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia]2.12e-19898.95Show/hide
Query:  MLGLRDVLFLAPTSTSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPP-NQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV
        MLGLRDVLFLAPTSTSDHH SLPLHSPAALGVSVGIFPLLAATPSLPPPPQPP NQTAEEVSDRTRSL+NLKKTHDFGFGKGDSFIAGDKGDAGESSMAV
Subjt:  MLGLRDVLFLAPTSTSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPP-NQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV

Query:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSR
        CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSR
Subjt:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSR

Query:  SFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
        SFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
Subjt:  SFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE

XP_022945608.1 protein SHI RELATED SEQUENCE 6-like [Cucurbita moschata]2.78e-19698.95Show/hide
Query:  MLGLRDVLFLAPTSTSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPP-NQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV
        MLGLRDVLFLAPTSTSDHH SLPLHSPAALGVSVGIFPLLAATPSLPPPPQPP NQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV
Subjt:  MLGLRDVLFLAPTSTSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPP-NQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV

Query:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSR
        CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTP AAASHASASIATTSR
Subjt:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSR

Query:  SFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
        SFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
Subjt:  SFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE

XP_022967015.1 protein SHI RELATED SEQUENCE 6-like [Cucurbita maxima]1.48e-19697.57Show/hide
Query:  MLGLRDVLFLAPTSTSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPP--NQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMA
        MLGLRDVLFLAPTSTSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPP PP  N+TAEEVSDRTRS ENLK+THDFGFGKGDSFIAGDKGDAGESSMA
Subjt:  MLGLRDVLFLAPTSTSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPP--NQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMA

Query:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTS
        VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTS
Subjt:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTS

Query:  RSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
        RSFETTSNHQDASFKKSLPGQVR PAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
Subjt:  RSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE

XP_023541249.1 protein SHI RELATED SEQUENCE 6-like [Cucurbita pepo subsp. pepo]4.48e-202100Show/hide
Query:  MLGLRDVLFLAPTSTSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAVC
        MLGLRDVLFLAPTSTSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAVC
Subjt:  MLGLRDVLFLAPTSTSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAVC

Query:  RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSRS
        RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSRS
Subjt:  RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSRS

Query:  FETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
        FETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
Subjt:  FETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE

XP_038892899.1 protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida]1.50e-15879.67Show/hide
Query:  MLGLRDVLFLAPTSTS----------DHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD--
        MLGLRDVLF+APT +S          DHHPSLPL S AALGVSVGIFPLL ATP LPPP   PNQTA++V+DR+RSLENLK+T DFGFGKGDS + G   
Subjt:  MLGLRDVLFLAPTSTS----------DHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD--

Query:  -------KGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQS
               KGDAG+ SMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQS
Subjt:  -------KGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQS

Query:  TPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESG
        T  AAA+ AS S ATT RSFETTS+HQDASFKKSLPG VRAPAVFR HRVTAI+SGEGELAYQATVNIGGHVFKGFLYDQG  D KN +PS+SHLHL+SG
Subjt:  TPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESG

Query:  SHHRE
        +HHR+
Subjt:  SHHRE

TrEMBL top hitse value%identityAlignment
A0A0A0KWX6 Uncharacterized protein1.18e-15578.76Show/hide
Query:  MLGLRDVLFLAPTSTS----------DHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQ-TAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD-
        MLGLRDVLF+APT +S          DHHPSLPL S  ALGVSVGIFPLLAATP LPP   PPN  T ++V+DRTR+ +NLK+T DFGFGKG+S IAG  
Subjt:  MLGLRDVLFLAPTSTS----------DHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQ-TAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD-

Query:  --------KGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
                KGDAG+ SMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
Subjt:  --------KGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ

Query:  STPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLES
        S   AAA+ AS S ATT RSFETTS+HQDASFKKSLPG VRAPAVFR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG  D KN +PS+SHLHL+S
Subjt:  STPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLES

Query:  GSHHRE
        G+HHRE
Subjt:  GSHHRE

A0A1S3BFS5 protein LATERAL ROOT PRIMORDIUM 14.81e-15578.43Show/hide
Query:  MLGLRDVLFLAPTSTS----------DHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQ-TAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD-
        MLGLRDVLF+APT +S          DHHPSLPL S  ALGVSVGIFPLLAATP LPP   PPN  T ++V+DRTR+ +NLK+T DFGFGKG+S I G  
Subjt:  MLGLRDVLFLAPTSTS----------DHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQ-TAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD-

Query:  --------KGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
                KGDAG+ SMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
Subjt:  --------KGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ

Query:  STPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLES
        S   AAA+ AS S ATT RSFETTS+HQDASFKKSLPG VRAPAVFR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG  D KN +PS+SHLHL+S
Subjt:  STPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLES

Query:  GSHHRE
        G+HHRE
Subjt:  GSHHRE

A0A6J1CEG6 protein LATERAL ROOT PRIMORDIUM 14.35e-15579.22Show/hide
Query:  MLGLRDVLFLAPTSTS-----------DHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD-
        MLGLRDVLF+APT +S           DHHPSLPL S AALGVSVGIFPLLAATP LP PP PP   AE VS+R R ++NLK+T DFGFGKGDS IAG  
Subjt:  MLGLRDVLFLAPTSTS-----------DHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD-

Query:  -------KGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQS
               +GDAG+SSM VCRDCGNRAKKEC+YRRCRTCCKGRGNHCSTHVKSTWV A+RRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQS
Subjt:  -------KGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQS

Query:  TPPAAA---SHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHL
        T  AAA   SHAS S ATT RSFET+SNHQDASFKKSLPGQVRAPAVFR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG+ D KNG+PS+SHLHL
Subjt:  TPPAAA---SHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHL

Query:  ESGSHHRE
        ESG+HH +
Subjt:  ESGSHHRE

A0A6J1G1D4 protein SHI RELATED SEQUENCE 6-like1.35e-19698.95Show/hide
Query:  MLGLRDVLFLAPTSTSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPP-NQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV
        MLGLRDVLFLAPTSTSDHH SLPLHSPAALGVSVGIFPLLAATPSLPPPPQPP NQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV
Subjt:  MLGLRDVLFLAPTSTSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPP-NQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV

Query:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSR
        CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTP AAASHASASIATTSR
Subjt:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSR

Query:  SFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
        SFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
Subjt:  SFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE

A0A6J1HT71 protein SHI RELATED SEQUENCE 6-like7.18e-19797.57Show/hide
Query:  MLGLRDVLFLAPTSTSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPP--NQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMA
        MLGLRDVLFLAPTSTSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPP PP  N+TAEEVSDRTRS ENLK+THDFGFGKGDSFIAGDKGDAGESSMA
Subjt:  MLGLRDVLFLAPTSTSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPP--NQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMA

Query:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTS
        VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTS
Subjt:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTS

Query:  RSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
        RSFETTSNHQDASFKKSLPGQVR PAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
Subjt:  RSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE

SwissProt top hitse value%identityAlignment
K4B6C9 Protein EXPRESSION OF TERPENOIDS 12.3e-2638.46Show/hide
Query:  LENLKKTHDFGFGKGDS-----FIAGDKGDAGESSMAV---------CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDG
        L++L  T D G G G S       AGD  +A  S   +         C+DCGN+AKK+C++ RCRTCCK RG  C THVKSTWVPA++RRERQ  +    
Subjt:  LENLKKTHDFGFGKGDS-----FIAGDKGDAGESSMAV---------CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDG

Query:  VATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGH
               G ++ +++   KR       Q   P+A+S  S  + + +   E              P +VR  AVF+  ++++I   E +LAYQA V+IGGH
Subjt:  VATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGH

Query:  VFKGFLYDQGVVDHKNGYPSL
        VFKG LYDQG   H++ Y ++
Subjt:  VFKGFLYDQGVVDHKNGYPSL

O65517 Protein SHI RELATED SEQUENCE 22.0e-3046.67Show/hide
Query:  DKGDAGESSMAV---CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPP
        D  D   SS ++   CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P +RRRERQ  + M    + SG GG SGS  AG       IP +   P
Subjt:  DKGDAGESSMAV---CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPP

Query:  AAASHASAS-IATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQG
             +S+S + + S   E      +ASF    PG+V + A+FR  +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG
Subjt:  AAASHASAS-IATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQG

Q94CK9 Protein LATERAL ROOT PRIMORDIUM 11.1e-4944.37Show/hide
Query:  MLGLRDVLFLAPT---------STSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQTAEEVSDRTRSLENLKKTHD---FGFGKGDSFIAGD
        M+GLRDV  +AP          S SDH  S   ++ AA  + VG+ PLL A      P Q    +        R  +N    H+     F   +    G 
Subjt:  MLGLRDVLFLAPT---------STSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQTAEEVSDRTRSLENLKKTHD---FGFGKGDSFIAGD

Query:  KGD-----AGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTP
          +     +G S  A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++        A+   GSS S+S+G K+PR++   Q   
Subjt:  KGD-----AGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTP

Query:  PAAASHASASIATTSRSFETTSNHQD-ASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGS
          A SH S S  T  +SFET+S+ QD    +++ PGQVRA AVF+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG ++ K G+PS+S LHL   +
Subjt:  PAAASHASASIATTSRSFETTSNHQD-ASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGS

Query:  HH
        ++
Subjt:  HH

Q9LQZ5 Protein SHI RELATED SEQUENCE 53.0e-2638.22Show/hide
Query:  PPNQTAEEVSDRTRSLE-NLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVM
        P   ++   ++R+RSL  N+   H+ G      F    +G         C+DCGN+AKK+C + RCRTCCK RG HC THVKSTWVPA++RRER     +
Subjt:  PPNQTAEEVSDRTRSLE-NLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVM

Query:  DGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGE--LAYQATVN
          +A+      SS   +  AKR R      +      S    S    +R     SN       + LP +V +PA+FR  RV++I   E +   AYQ  VN
Subjt:  DGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGE--LAYQATVN

Query:  IGGHVFKGFLYDQGVVDHKNGYPSL
        IGGH+FKG LYDQG     N + +L
Subjt:  IGGHVFKGFLYDQGVVDHKNGYPSL

Q9M2U4 Protein SHI RELATED SEQUENCE 64.8e-3244.15Show/hide
Query:  DKGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAA
        D    GE    VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P+S  R                      SSS   ++ ++ I  QS+P  + 
Subjt:  DKGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAA

Query:  SHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLS
                       TT++ Q+  F++ LPG++ APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G VDH   +P LS
Subjt:  SHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLS

Arabidopsis top hitse value%identityAlignment
AT3G54430.1 SHI-related sequence 63.4e-3344.15Show/hide
Query:  DKGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAA
        D    GE    VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P+S  R                      SSS   ++ ++ I  QS+P  + 
Subjt:  DKGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAA

Query:  SHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLS
                       TT++ Q+  F++ LPG++ APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G VDH   +P LS
Subjt:  SHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLS

AT4G36260.1 Lateral root primordium (LRP) protein-related1.4e-3146.67Show/hide
Query:  DKGDAGESSMAV---CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPP
        D  D   SS ++   CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P +RRRERQ  + M    + SG GG SGS  AG       IP +   P
Subjt:  DKGDAGESSMAV---CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPP

Query:  AAASHASAS-IATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQG
             +S+S + + S   E      +ASF    PG+V + A+FR  +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG
Subjt:  AAASHASAS-IATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQG

AT5G12330.1 Lateral root primordium (LRP) protein-related8.0e-5144.37Show/hide
Query:  MLGLRDVLFLAPT---------STSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQTAEEVSDRTRSLENLKKTHD---FGFGKGDSFIAGD
        M+GLRDV  +AP          S SDH  S   ++ AA  + VG+ PLL A      P Q    +        R  +N    H+     F   +    G 
Subjt:  MLGLRDVLFLAPT---------STSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQTAEEVSDRTRSLENLKKTHD---FGFGKGDSFIAGD

Query:  KGD-----AGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTP
          +     +G S  A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++        A+   GSS S+S+G K+PR++   Q   
Subjt:  KGD-----AGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTP

Query:  PAAASHASASIATTSRSFETTSNHQD-ASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGS
          A SH S S  T  +SFET+S+ QD    +++ PGQVRA AVF+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG ++ K G+PS+S LHL   +
Subjt:  PAAASHASASIATTSRSFETTSNHQD-ASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGS

Query:  HH
        ++
Subjt:  HH

AT5G12330.2 Lateral root primordium (LRP) protein-related8.0e-5144.37Show/hide
Query:  MLGLRDVLFLAPT---------STSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQTAEEVSDRTRSLENLKKTHD---FGFGKGDSFIAGD
        M+GLRDV  +AP          S SDH  S   ++ AA  + VG+ PLL A      P Q    +        R  +N    H+     F   +    G 
Subjt:  MLGLRDVLFLAPT---------STSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQTAEEVSDRTRSLENLKKTHD---FGFGKGDSFIAGD

Query:  KGD-----AGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTP
          +     +G S  A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++        A+   GSS S+S+G K+PR++   Q   
Subjt:  KGD-----AGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTP

Query:  PAAASHASASIATTSRSFETTSNHQD-ASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGS
          A SH S S  T  +SFET+S+ QD    +++ PGQVRA AVF+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG ++ K G+PS+S LHL   +
Subjt:  PAAASHASASIATTSRSFETTSNHQD-ASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGS

Query:  HH
        ++
Subjt:  HH

AT5G12330.4 Lateral root primordium (LRP) protein-related8.0e-5144.37Show/hide
Query:  MLGLRDVLFLAPT---------STSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQTAEEVSDRTRSLENLKKTHD---FGFGKGDSFIAGD
        M+GLRDV  +AP          S SDH  S   ++ AA  + VG+ PLL A      P Q    +        R  +N    H+     F   +    G 
Subjt:  MLGLRDVLFLAPT---------STSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQTAEEVSDRTRSLENLKKTHD---FGFGKGDSFIAGD

Query:  KGD-----AGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTP
          +     +G S  A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++        A+   GSS S+S+G K+PR++   Q   
Subjt:  KGD-----AGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTP

Query:  PAAASHASASIATTSRSFETTSNHQD-ASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGS
          A SH S S  T  +SFET+S+ QD    +++ PGQVRA AVF+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG ++ K G+PS+S LHL   +
Subjt:  PAAASHASASIATTSRSFETTSNHQD-ASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGS

Query:  HH
        ++
Subjt:  HH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGGTCTCAGAGATGTTCTGTTTTTAGCTCCGACGTCTACTTCCGATCATCATCCTTCTCTGCCTCTTCACTCCCCCGCCGCTCTCGGTGTCAGCGTTGGCATTTT
TCCACTTTTAGCGGCAACCCCATCTCTCCCGCCTCCTCCTCAGCCGCCTAATCAGACGGCTGAGGAAGTTAGTGATCGTACTCGGAGTTTGGAGAATCTGAAGAAAACCC
ATGATTTTGGGTTTGGGAAAGGGGATTCGTTTATTGCCGGCGACAAAGGCGACGCCGGCGAGAGCTCCATGGCGGTTTGTAGGGACTGTGGAAACAGAGCTAAAAAAGAG
TGTGAGTATCGGAGGTGCAGGACTTGTTGTAAAGGACGAGGGAATCATTGCTCTACTCATGTGAAGAGTACTTGGGTTCCGGCGTCTCGCCGCCGTGAACGTCAGATGTT
GGTGGTGATGGACGGCGTCGCCACTGCTAGTGGCGACGGTGGTTCTTCTGGTTCTTCGTCTGCTGGTGCTAAAAGACCCAGAGTTTTGATTCCTTCGCAGAGTACTCCTC
CTGCCGCCGCCTCTCACGCTTCTGCCTCCATTGCTACCACCTCCCGGAGCTTTGAAACAACCTCCAACCATCAAGATGCAAGCTTCAAGAAGTCCTTACCGGGGCAAGTT
CGTGCCCCGGCGGTGTTCCGGTACCATAGAGTGACAGCCATTAGCAGTGGTGAAGGAGAGTTAGCATACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTT
TCTGTATGATCAAGGAGTTGTTGATCACAAAAATGGATACCCATCTCTTTCACATCTCCATTTGGAAAGTGGTAGCCATCACAGGGAATAG
mRNA sequenceShow/hide mRNA sequence
TATTGGAGATAAGTATGATTTTTTAAATAACTAAAAAAATAGCCCGATAACTCAATCCAACCCGAGAGGGTTCGGTTGGATTGTGTTCTAAATTCTAATATATAATTTTA
AATATTTTGTTTAAAAAAAAAAAAATGAATTGCCTCTCCTTTTCAAATCTAAAAACAACTTTTGTCACTGCAGAGTTTGGAGAATTATTCATTCCACTTCATCTTCTTCC
TTTTTTTTTCTTTTTTTTCTTCTTTTTTTTTTTTTTTTTTTTNCAGAGAAATTCCCCGCCATGAACACACCAACATCATTCCATTTGCTTTCCTCTTAACAAATTTATTC
ATCGTTTAAGTGCTGTTCTTCCCAAATCTGAAACACCCTTTTCAGTTTGTTCCAATCAATCATCTTCTTCACTCTGTTTTTCAATGTTGGGTCTCAGAGATGTTCTGTTT
TTAGCTCCGACGTCTACTTCCGATCATCATCCTTCTCTGCCTCTTCACTCCCCCGCCGCTCTCGGTGTCAGCGTTGGCATTTTTCCACTTTTAGCGGCAACCCCATCTCT
CCCGCCTCCTCCTCAGCCGCCTAATCAGACGGCTGAGGAAGTTAGTGATCGTACTCGGAGTTTGGAGAATCTGAAGAAAACCCATGATTTTGGGTTTGGGAAAGGGGATT
CGTTTATTGCCGGCGACAAAGGCGACGCCGGCGAGAGCTCCATGGCGGTTTGTAGGGACTGTGGAAACAGAGCTAAAAAAGAGTGTGAGTATCGGAGGTGCAGGACTTGT
TGTAAAGGACGAGGGAATCATTGCTCTACTCATGTGAAGAGTACTTGGGTTCCGGCGTCTCGCCGCCGTGAACGTCAGATGTTGGTGGTGATGGACGGCGTCGCCACTGC
TAGTGGCGACGGTGGTTCTTCTGGTTCTTCGTCTGCTGGTGCTAAAAGACCCAGAGTTTTGATTCCTTCGCAGAGTACTCCTCCTGCCGCCGCCTCTCACGCTTCTGCCT
CCATTGCTACCACCTCCCGGAGCTTTGAAACAACCTCCAACCATCAAGATGCAAGCTTCAAGAAGTCCTTACCGGGGCAAGTTCGTGCCCCGGCGGTGTTCCGGTACCAT
AGAGTGACAGCCATTAGCAGTGGTGAAGGAGAGTTAGCATACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTTTCTGTATGATCAAGGAGTTGTTGATCA
CAAAAATGGATACCCATCTCTTTCACATCTCCATTTGGAAAGTGGTAGCCATCACAGGGAATAGACACATTCCTCCTCTTCTTTCTTCCTAAACTCTTCGTCCTAACGAT
TACCCGAAACCTCGGTCTCACCTCGGCTCTCGGCTCCCGGCTCTCGGCTCGGAACCTTGAAAGATATCATATCTCTACTAGGATGAAGCAAGCAAGCTTGCTTGCCCCCA
TCTCTTGTTTGATTGTCTATCTAAGAAACGCTCGTAACCGTCGAGTATCTACTTGTGAATGCTATCATTTAGCTACGACTTCAAATATTGTCACCGATATGGATCTTCTC
TAATTATGATTGAGACCGTGTTCATTGTGAATATGTAGTAGGAAGCTATATGAATGAAGTCGAAGCCAACACGAGAAGGCGAACAAAATCCATAGCTCACTATCACACCC
TAGTCTTTTCATATATTATTGGCCCCTCATTGTACAAAGTGTAGGAAACGACTCCGACTACATATCATAGCAAATAGCAAAAAAACGTGACTAAACGGTACGCAAAAAAG
ATGTTCGAGAACCCAATGGCTAATG
Protein sequenceShow/hide protein sequence
MLGLRDVLFLAPTSTSDHHPSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKKE
CEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQV
RAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE