; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cp4.1LG12g03210 (gene) of Cucurbita pepo (MU-CU-16) v4.1 genome

Gene IDCp4.1LG12g03210
OrganismCucurbita pepo var. pepo MU-CU-16 (Cucurbita pepo (MU-CU-16) v4.1)
Descriptionprotein SINE3
Genome locationCp4.1LG12:2165520..2166552
RNA-Seq ExpressionCp4.1LG12g03210
SyntenyCp4.1LG12g03210
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575120.1 hypothetical protein SDJN03_25759, partial [Cucurbita argyrosperma subsp. sororia]1.09e-11485.59Show/hide
Query:  MEKRMKDSQTPQRDQAANRRSRKPLK------------------QSSKQDFSSISVVSDVNQIPDIDR-----CLLHDVNPALSACCGSSLIPDLSPSSI
        MEKRMKDSQTPQRDQAANRRSRKPLK                  QSSKQDFS ISVVSDVNQIPDIDR       LHDVNPALSACCGSSLIPDLSPSS+
Subjt:  MEKRMKDSQTPQRDQAANRRSRKPLK------------------QSSKQDFSSISVVSDVNQIPDIDR-----CLLHDVNPALSACCGSSLIPDLSPSSI

Query:  VTFDNGQLDKVPVNFSGSNDLDESSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWII
        VTFDNGQLDKVPVNFSGSNDLDE+ AGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRD IFQLISAK+QVLSISLFLWII
Subjt:  VTFDNGQLDKVPVNFSGSNDLDESSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWII

Query:  VLALAFFFDSEVKSSFIGPLPT
        VLALAFFF+SEVKSSFIGPLPT
Subjt:  VLALAFFFDSEVKSSFIGPLPT

XP_022959315.1 uncharacterized protein LOC111460327 isoform X1 [Cucurbita moschata]5.55e-11686.18Show/hide
Query:  MEKRMKDSQTPQRDQAANRRSRKPLK------------------QSSKQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDN
        ME+RMKDSQTPQRDQAANRRSRKPLK                  +SSKQDFSSISVVSDVNQIPDIDR  LHDVNPALSACCGSSLIPDLSPSS+VTFDN
Subjt:  MEKRMKDSQTPQRDQAANRRSRKPLK------------------QSSKQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDN

Query:  GQLDKVPVNFSGSNDLDESSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALA
        GQLDKVPVNFSGSNDLDE+ AGSVGAEIAV+SLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRD IFQ+ISAK+QVLSISLFLWIIVLALA
Subjt:  GQLDKVPVNFSGSNDLDESSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALA

Query:  FFFDSEVKSSFIGPLPT
        FFF+SEVKSSFIGPLPT
Subjt:  FFFDSEVKSSFIGPLPT

XP_022959316.1 uncharacterized protein LOC111460327 isoform X2 [Cucurbita moschata]5.20e-11090.67Show/hide
Query:  MEKRMKDSQTPQRDQAANRRSRKPLKQSSKQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDNGQLDKVPVNFSGSNDLDE
        ME+RMKDSQTPQRDQAANRRSRKPLK+SSKQDFSSISVVSDVNQIPDIDR  LHDVNPALSACCGSSLIPDLSPSS+VTFDNGQLDKVPVNFSGSNDLDE
Subjt:  MEKRMKDSQTPQRDQAANRRSRKPLKQSSKQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDNGQLDKVPVNFSGSNDLDE

Query:  SSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALAFFFDSEVKSSF
        + AGSVGAEIAV+SLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRD IFQ+ISAK+QVLSISLFLWIIVLALAF  D  V  +F
Subjt:  SSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALAFFFDSEVKSSF

XP_023548463.1 uncharacterized protein LOC111807117 [Cucurbita pepo subsp. pepo]3.81e-128100Show/hide
Query:  MEKRMKDSQTPQRDQAANRRSRKPLKQSSKQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDNGQLDKVPVNFSGSNDLDE
        MEKRMKDSQTPQRDQAANRRSRKPLKQSSKQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDNGQLDKVPVNFSGSNDLDE
Subjt:  MEKRMKDSQTPQRDQAANRRSRKPLKQSSKQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDNGQLDKVPVNFSGSNDLDE

Query:  SSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALAFFFDSEVKSSFIGPLPT
        SSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALAFFFDSEVKSSFIGPLPT
Subjt:  SSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALAFFFDSEVKSSFIGPLPT

XP_038876305.1 uncharacterized protein LOC120068561 [Benincasa hispida]1.21e-8970.97Show/hide
Query:  MEKRMKDSQTPQRDQAANRRSRKPLKQS------------------SKQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDN
        MEK+MKD QTPQRDQ ANRRSRKP K +                  SK+DFS ISVV+D+NQIPDID   L  VNPA SA C +SL  DLSPSS+V+FDN
Subjt:  MEKRMKDSQTPQRDQAANRRSRKPLKQS------------------SKQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDN

Query:  GQLDKVPVNFSGSNDLDESSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALA
         QLDKVPVNFSGSND+DE+SAGSV  +IAVNSL RALTQVLQSTDVDHQ+KKLIDAS+ IIVDDFLAIPQ+RDQI QLIS K+ VLS+ +FLWIIVLA+A
Subjt:  GQLDKVPVNFSGSNDLDESSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALA

Query:  FFFDSEVKSSFIGPLPT
        FF  S VKSSFIGPLPT
Subjt:  FFFDSEVKSSFIGPLPT

TrEMBL top hitse value%identityAlignment
A0A1S4E1Y8 uncharacterized protein LOC1034977817.09e-8467.74Show/hide
Query:  MEKRMKDSQTPQRDQAANRRSRKPLKQS------------------SKQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDN
        MEKRMKD QTPQR+Q  NRRSRKP K +                  SK++ S ISVVSDVNQI DID   L  VNP  SACC +SL PDLSPSS+V+FDN
Subjt:  MEKRMKDSQTPQRDQAANRRSRKPLKQS------------------SKQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDN

Query:  GQLDKVPVNFSGSNDLDESSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALA
          LDKV V+FSGSND++E+SAGS+ AEIAVNSL RALTQVL STDVDHQ+KKLIDAS+RIIVDDFLAIPQ+RD+I QLIS K+ VLS+ +FLWI+VLA+A
Subjt:  GQLDKVPVNFSGSNDLDESSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALA

Query:  FFFDSEVKSSFIGPLPT
        FF  S VKSSF GPLPT
Subjt:  FFFDSEVKSSFIGPLPT

A0A6J1EQ83 uncharacterized protein LOC1114368221.84e-8669.12Show/hide
Query:  MEKRMKDSQTPQRDQAANRRSRKPLKQSS------------------KQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDN
        MEKR K+ QTP RDQAANRRS+KPLK +                   K+DFS ISVVS+++QIPDID   L DVNPALS  C SSL P+LSPSS+VTFDN
Subjt:  MEKRMKDSQTPQRDQAANRRSRKPLKQSS------------------KQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDN

Query:  GQLDKVPVNFSGSNDLDESSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALA
         QLDKVPVNF GSN+LDE+SAGSV AEIAVN L RAL+QVLQSTDVDHQ+KKLIDAS+RIIVD+FLAIPQ+RD I +LIS+KS VLS+ LFLWIIVL LA
Subjt:  GQLDKVPVNFSGSNDLDESSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALA

Query:  FFFDSEVKSSFIGPLPT
        FF  S V++ FIGPLPT
Subjt:  FFFDSEVKSSFIGPLPT

A0A6J1H4I4 uncharacterized protein LOC111460327 isoform X22.52e-11090.67Show/hide
Query:  MEKRMKDSQTPQRDQAANRRSRKPLKQSSKQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDNGQLDKVPVNFSGSNDLDE
        ME+RMKDSQTPQRDQAANRRSRKPLK+SSKQDFSSISVVSDVNQIPDIDR  LHDVNPALSACCGSSLIPDLSPSS+VTFDNGQLDKVPVNFSGSNDLDE
Subjt:  MEKRMKDSQTPQRDQAANRRSRKPLKQSSKQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDNGQLDKVPVNFSGSNDLDE

Query:  SSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALAFFFDSEVKSSF
        + AGSVGAEIAV+SLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRD IFQ+ISAK+QVLSISLFLWIIVLALAF  D  V  +F
Subjt:  SSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALAFFFDSEVKSSF

A0A6J1H5Y6 uncharacterized protein LOC111460327 isoform X12.69e-11686.18Show/hide
Query:  MEKRMKDSQTPQRDQAANRRSRKPLK------------------QSSKQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDN
        ME+RMKDSQTPQRDQAANRRSRKPLK                  +SSKQDFSSISVVSDVNQIPDIDR  LHDVNPALSACCGSSLIPDLSPSS+VTFDN
Subjt:  MEKRMKDSQTPQRDQAANRRSRKPLK------------------QSSKQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDN

Query:  GQLDKVPVNFSGSNDLDESSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALA
        GQLDKVPVNFSGSNDLDE+ AGSVGAEIAV+SLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRD IFQ+ISAK+QVLSISLFLWIIVLALA
Subjt:  GQLDKVPVNFSGSNDLDESSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALA

Query:  FFFDSEVKSSFIGPLPT
        FFF+SEVKSSFIGPLPT
Subjt:  FFFDSEVKSSFIGPLPT

A0A6J1KL67 uncharacterized protein LOC1114942861.51e-8569.12Show/hide
Query:  MEKRMKDSQTPQRDQAANRRSRKPLKQSS------------------KQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDN
        MEKR K+ QTP RDQAANRRS+KPLK +                   K+DFS ISVVS+++QIPDID   L DVNPALS  C SSL P+LSPSS+VTFDN
Subjt:  MEKRMKDSQTPQRDQAANRRSRKPLKQSS------------------KQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDN

Query:  GQLDKVPVNFSGSNDLDESSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALA
         QLDKVPVNF  SN+LDE+SAGSV AEIAVN L RAL QVLQSTDVDHQ+KKLIDAS+RIIVDDFLAIPQ+RD I +LIS+KS VLS+ LFLWIIVL LA
Subjt:  GQLDKVPVNFSGSNDLDESSAGSVGAEIAVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALA

Query:  FFFDSEVKSSFIGPLPT
        FF  S V++ FIGPLPT
Subjt:  FFFDSEVKSSFIGPLPT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAAAGGATGAAAGACTCCCAAACTCCGCAGAGAGATCAAGCGGCAAATCGTAGATCGAGGAAACCTCTGAAGCAAAGTTCGAAGCAAGACTTCTCTTCGATTTC
TGTTGTCTCAGACGTCAATCAAATTCCAGATATCGATCGATGTTTGTTGCATGATGTTAATCCGGCTCTTTCTGCTTGCTGCGGGAGCTCTCTTATCCCCGATCTTTCTC
CATCTTCAATTGTCACTTTTGATAATGGACAGCTTGACAAAGTTCCAGTTAATTTTTCTGGATCTAATGATTTGGATGAAAGTAGCGCGGGTTCAGTAGGAGCAGAGATT
GCTGTAAATTCTTTAAGTCGTGCTCTAACTCAAGTCCTGCAATCCACGGATGTTGATCATCAGGCCAAGAAGCTTATAGATGCATCCATAAGGATCATTGTAGACGATTT
CCTTGCTATACCTCAAGATCGAGACCAGATTTTTCAACTTATTTCTGCCAAAAGTCAAGTTCTCTCTATATCCTTATTCTTGTGGATCATCGTCTTGGCATTAGCTTTCT
TTTTCGATTCGGAAGTCAAGAGCTCTTTCATCGGGCCATTGCCAACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAAAGGATGAAAGACTCCCAAACTCCGCAGAGAGATCAAGCGGCAAATCGTAGATCGAGGAAACCTCTGAAGCAAAGTTCGAAGCAAGACTTCTCTTCGATTTC
TGTTGTCTCAGACGTCAATCAAATTCCAGATATCGATCGATGTTTGTTGCATGATGTTAATCCGGCTCTTTCTGCTTGCTGCGGGAGCTCTCTTATCCCCGATCTTTCTC
CATCTTCAATTGTCACTTTTGATAATGGACAGCTTGACAAAGTTCCAGTTAATTTTTCTGGATCTAATGATTTGGATGAAAGTAGCGCGGGTTCAGTAGGAGCAGAGATT
GCTGTAAATTCTTTAAGTCGTGCTCTAACTCAAGTCCTGCAATCCACGGATGTTGATCATCAGGCCAAGAAGCTTATAGATGCATCCATAAGGATCATTGTAGACGATTT
CCTTGCTATACCTCAAGATCGAGACCAGATTTTTCAACTTATTTCTGCCAAAAGTCAAGTTCTCTCTATATCCTTATTCTTGTGGATCATCGTCTTGGCATTAGCTTTCT
TTTTCGATTCGGAAGTCAAGAGCTCTTTCATCGGGCCATTGCCAACTTAA
Protein sequenceShow/hide protein sequence
MEKRMKDSQTPQRDQAANRRSRKPLKQSSKQDFSSISVVSDVNQIPDIDRCLLHDVNPALSACCGSSLIPDLSPSSIVTFDNGQLDKVPVNFSGSNDLDESSAGSVGAEI
AVNSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDQIFQLISAKSQVLSISLFLWIIVLALAFFFDSEVKSSFIGPLPT