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Cp4.1LG14g04480 (gene) of Cucurbita pepo (MU-CU-16) v4.1 genome

Gene IDCp4.1LG14g04480
OrganismCucurbita pepo var. pepo MU-CU-16 (Cucurbita pepo (MU-CU-16) v4.1)
Descriptionmediator of RNA polymerase II transcription subunit 28
Genome locationCp4.1LG14:1586492..1587898
RNA-Seq ExpressionCp4.1LG14g04480
SyntenyCp4.1LG14g04480
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0016592 - mediator complex (cellular component)
InterPro domainsIPR034456 - Mediator of RNA polymerase II transcription subunit 28


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152267.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus]2.47e-5791Show/hide
Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
        MAERQP+DQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRK +S
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
XP_008454378.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]1.66e-5590Show/hide
Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
        MAERQ LDQQ+ +DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRK +S
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
XP_022149222.1 mediator of RNA polymerase II transcription subunit 28 [Momordica charantia]4.09e-5690Show/hide
Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
        MA+RQP+DQQ+Q+DPQLQS QSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRK +S
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
XP_022922953.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata]3.15e-6098Show/hide
Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
        MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRK +S
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
XP_038904970.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida]1.01e-5691Show/hide
Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
        MAERQPLDQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRK +S
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
TrEMBL top hitse value%identityAlignment
A0A0A0KT19 Uncharacterized protein1.20e-5791Show/hide
Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
        MAERQP+DQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRK +S
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
A0A1S3BZ89 mediator of RNA polymerase II transcription subunit 288.06e-5690Show/hide
Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
        MAERQ LDQQ+ +DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRK +S
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
A0A6J1D7C5 mediator of RNA polymerase II transcription subunit 281.98e-5690Show/hide
Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
        MA+RQP+DQQ+Q+DPQLQS QSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRK +S
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
A0A6J1E897 mediator of RNA polymerase II transcription subunit 281.52e-6098Show/hide
Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
        MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRK +S
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
A0A6J1JAT8 mediator of RNA polymerase II transcription subunit 281.52e-6098Show/hide
Query:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
        MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRK +S
Subjt:  MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMS
SwissProt top hitse value%identityAlignment
Q9LFA5 Mediator of RNA polymerase II transcription subunit 283.8e-2766.32Show/hide
Query:  PQLQSSQSPR-------EDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKIMSI
        P ++S ++P        ED+++ V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K +++
Subjt:  PQLQSSQSPR-------EDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKIMSI
Arabidopsis top hitse value%identityAlignment
AT3G52860.1 unknown protein2.7e-2866.32Show/hide
Query:  PQLQSSQSPR-------EDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKIMSI
        P ++S ++P        ED+++ V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K +++
Subjt:  PQLQSSQSPR-------EDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKIMSI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAACGACAACCACTTGACCAGCAGAATCAAATCGATCCACAGTTGCAATCCTCGCAGTCTCCAAGAGAAGATATGGTTTCATATGTGATGGCCTTGGAAGCTGC
TCTGCTTCCCTGCTTGCCTGCGAGAGAACTACAAGCAATCGACCGTTCTCCTCACCCTTCTCATCAAATTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTA
AAAAGCTTCAATTGTACTTCATTGGTTTACAACGGGAGGATCAGCCAACCAAAGTGGAAACACTAAGAAAGATCATGTCAATTTCATACATTCACAACTAA
mRNA sequenceShow/hide mRNA sequence
GTAAAAATTAAAAAGGGAATTGAAATATAAATAGGTCCAAGAAAAAAGAGGACCCGCCTGATCGCATCGGCGACTCAGAATCTACGGTTAGTGAAGAATTCTCAGTTACC
GCCCAAAGGAACTCCGGAGCTGGACGGCAAATTCACCCCTTCTGCGACCGACCGAGCTCGTCGTCCTTCAAATCCTTCTTCTTGTCGATTTCTTTGTCGATGAATTGAAA
TGGAGATTTGATTGTGGTCACAAGATATGGCTGAACGACAACCACTTGACCAGCAGAATCAAATCGATCCACAGTTGCAATCCTCGCAGTCTCCAAGAGAAGATATGGTT
TCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCCTGCTTGCCTGCGAGAGAACTACAAGCAATCGACCGTTCTCCTCACCCTTCTCATCAAATTGACGTGGAGAGACA
TGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAATTGTACTTCATTGGTTTACAACGGGAGGATCAGCCAACCAAAGTGGAAACACTAAGAAAGATCATGTCAATTT
CATACATTCACAACTAA
Protein sequenceShow/hide protein sequence
MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKIMSISYIHN