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Cp4.1LG15g04440 (gene) of Cucurbita pepo (MU-CU-16) v4.1 genome

Gene IDCp4.1LG15g04440
OrganismCucurbita pepo var. pepo MU-CU-16 (Cucurbita pepo (MU-CU-16) v4.1)
DescriptionTranscription factor
Genome locationCp4.1LG15:5540508..5541563
RNA-Seq ExpressionCp4.1LG15g04440
SyntenyCp4.1LG15g04440
Gene Ontology termsGO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571924.1 Transcription factor basic helix-loop-helix 84, partial [Cucurbita argyrosperma subsp. sororia]4.31e-2183.33Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL
        TMLEEAVQYVKFLQLQIK          LLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL

XP_022953029.1 transcription factor bHLH85-like [Cucurbita moschata]4.37e-2183.33Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL
        TMLEEAVQYVKFLQLQIK          LLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL

XP_022972549.1 transcription factor bHLH139-like [Cucurbita maxima]2.33e-2183.33Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL
        TMLEEAVQYVKFLQLQIK          LLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL

XP_022988919.1 transcription factor bHLH85-like [Cucurbita maxima]3.87e-1878.33Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL
        TMLEEAVQYVKFLQLQIK          LLSSDDLWMYAPIAYNGMDIGLN TPNT K L
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL

XP_023511608.1 transcription factor bHLH85-like [Cucurbita pepo subsp. pepo]4.43e-2183.33Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL
        TMLEEAVQYVKFLQLQIK          LLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL

TrEMBL top hitse value%identityAlignment
A0A6J1D6L1 transcription factor bHLH846.04e-1775.86Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPK
        TMLEEAVQYVKFL+LQIK          LLSSDDLWMYAPIAYNGMD+ LNPTP TPK
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPK

A0A6J1EIT4 transcription factor bHLH139-like7.28e-1876.67Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL
        TMLEEAVQYVKFLQLQIK          LLSSDDLWMYAPIAYNGMDIGLN +PNT K L
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL

A0A6J1GNG8 transcription factor bHLH85-like2.12e-2183.33Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL
        TMLEEAVQYVKFLQLQIK          LLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL

A0A6J1IBW7 transcription factor bHLH139-like1.13e-2183.33Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL
        TMLEEAVQYVKFLQLQIK          LLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL

A0A6J1JMX8 transcription factor bHLH85-like1.87e-1878.33Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL
        TMLEEAVQYVKFLQLQIK          LLSSDDLWMYAPIAYNGMDIGLN TPNT K L
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL

SwissProt top hitse value%identityAlignment
Q2QQ32 Transcription factor BHLH1331.2e-0661.36Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYN
        TMLEEA+QYVKFL LQI          KLLSSD++WMYAP+A++
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYN

Q3E7L7 Transcription factor bHLH1391.2e-0962.75Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLN
        TMLE+AV YVKFLQLQI          KLLSS+DLWMYAP+A+NG+++GL+
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLN

Q7XHI9 Transcription factor bHLH843.8e-1378.43Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLN
        TMLEEAVQYVKFLQLQI          KLLSSDDLWMYAPIAYNGMDIGL+
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLN

Q84WK0 Transcription factor RSL24.2e-1274.51Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLN
        TMLEEAV YVKFLQLQI          KLLSSDDLWMYAPIA+NGMDIGL+
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLN

Q8LEG1 Transcription factor RSL33.6e-1168.63Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLN
        TMLEEAV YVKFLQLQI          KLLSSDDLWMYAP+AYNG+D+G +
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLN

Arabidopsis top hitse value%identityAlignment
AT1G27740.1 root hair defective 6-like 42.5e-1268.63Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLN
        TMLEEAV YVKFLQLQI          KLLSSDDLWMYAP+AYNG+D+G +
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLN

AT2G14760.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.7e-1478.43Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLN
        TMLEEAVQYVKFLQLQI          KLLSSDDLWMYAPIAYNGMDIGL+
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLN

AT2G14760.3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.7e-1478.43Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLN
        TMLEEAVQYVKFLQLQI          KLLSSDDLWMYAPIAYNGMDIGL+
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLN

AT4G33880.1 ROOT HAIR DEFECTIVE 6-LIKE 23.0e-1374.51Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLN
        TMLEEAV YVKFLQLQI          KLLSSDDLWMYAPIA+NGMDIGL+
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLN

AT5G43175.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein8.2e-1162.75Show/hide
Query:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLN
        TMLE+AV YVKFLQLQI          KLLSS+DLWMYAP+A+NG+++GL+
Subjt:  TMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACTTCCCTTTCCCAGCAGGAATTCTTACTTCATTACACGGATCACAATGCTCGAGGAAGCTGTTCAATATGTGAAGTTTCTACAGCTCCAAATCAAGGTC
ATTTACAAACAAAACAAAATCAAGAAACTATTAAGCTCGGATGATTTATGGATGTATGCTCCGATCGCTTACAACGGAATGGATATCGGGCTTAATCCGACCCCG
AACACACCGAAAGTGTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACTTCCCTTTCCCAGCAGGAATTCTTACTTCATTACACGGATCACAATGCTCGAGGAAGCTGTTCAATATGTGAAGTTTCTACAGCTCCAAATCAAGGTC
ATTTACAAACAAAACAAAATCAAGAAACTATTAAGCTCGGATGATTTATGGATGTATGCTCCGATCGCTTACAACGGAATGGATATCGGGCTTAATCCGACCCCG
AACACACCGAAAGTGTTATGA
Protein sequenceShow/hide protein sequence
MELPFPSRNSYFITRITMLEEAVQYVKFLQLQIKVIYKQNKIKKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKVL