; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cp4.1LG17g09960 (gene) of Cucurbita pepo (MU-CU-16) v4.1 genome

Gene IDCp4.1LG17g09960
OrganismCucurbita pepo var. pepo MU-CU-16 (Cucurbita pepo (MU-CU-16) v4.1)
Descriptiontranscription factor IBH1
Genome locationCp4.1LG17:7635832..7636260
RNA-Seq ExpressionCp4.1LG17g09960
SyntenyCp4.1LG17g09960
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575326.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. sororia]7.26e-4968.53Show/hide
Query:  MNSSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMSSAYPNDHVGKLR
        + S+SS+ RLARTFLRSF+ IKS+ P    S    ELRRRSRRIK+ AYSSMAR AGP+ AWARALLFKL TRARHRTL+ RRR    S   +D VGKLR
Subjt:  MNSSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMSSAYPNDHVGKLR

Query:  RLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLSTN
        RL+PGG+ MDVCTLLEET +YI CLSAQVKVM AI  H  STN
Subjt:  RLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLSTN

KAG6592893.1 hypothetical protein SDJN03_12369, partial [Cucurbita argyrosperma subsp. sororia]9.26e-5896.23Show/hide
Query:  MNSSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMSSAYPNDHVGKLR
        MNSSSSS RLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMAR AGPQRAWARALLFKLNTRARHRTLMRRRRSTM SAYP+DHVGKLR
Subjt:  MNSSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMSSAYPNDHVGKLR

Query:  RLLPGG
        RLLPGG
Subjt:  RLLPGG

KAG7025295.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma]4.03e-8697.18Show/hide
Query:  MNSSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMSSAYPNDHVGKLR
        MNSSSSS RLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARH TLMRRRRSTM SAYP+DHVGKLR
Subjt:  MNSSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMSSAYPNDHVGKLR

Query:  RLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN
        RLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN
Subjt:  RLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN

XP_008464343.1 PREDICTED: transcription factor IBH1 [Cucumis melo]8.59e-5672.54Show/hide
Query:  MNSSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMSSAYPNDHVGKLR
        +NS+SS FR ARTFLR FSRIKS+R  T AS    +L+R+S+RIK+ AYSSMARVAGP+RAWARALLFKL TR RHRTLMRR+R   +S  P+D VGKLR
Subjt:  MNSSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMSSAYPNDHVGKLR

Query:  RLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLST
        RLLPGG+ MDVCTLLEETA+YIHCLS QVKVM AI+  HLST
Subjt:  RLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLST

XP_023005092.1 transcription factor IBH1 [Cucurbita maxima]4.52e-8394.37Show/hide
Query:  MNSSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMSSAYPNDHVGKLR
        MNSSSSS RLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQR WARALLFKLNTRARHRT MRRR STM SAYP+DHVGKLR
Subjt:  MNSSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMSSAYPNDHVGKLR

Query:  RLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN
        RL+PGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS N
Subjt:  RLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN

TrEMBL top hitse value%identityAlignment
A0A0A0KDQ3 Uncharacterized protein2.39e-4370.34Show/hide
Query:  RRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMSSAYPNDHVGKLRRLLPGGDGMDVCTLLEETADYIH
        R   T AS    +L+R+SRRIK+AAYSSMARVAG +RAWARALLF+L+TR RH+TLMRR+R   +S+  +D VGKLRRLLPGG+ MDVCTLLEETA+YIH
Subjt:  RRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMSSAYPNDHVGKLRRLLPGGDGMDVCTLLEETADYIH

Query:  CLSAQVKVMNAIA-HHLS
        CLS QVKVM AI+ HHLS
Subjt:  CLSAQVKVMNAIA-HHLS

A0A1S3CLD3 transcription factor IBH14.16e-5672.54Show/hide
Query:  MNSSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMSSAYPNDHVGKLR
        +NS+SS FR ARTFLR FSRIKS+R  T AS    +L+R+S+RIK+ AYSSMARVAGP+RAWARALLFKL TR RHRTLMRR+R   +S  P+D VGKLR
Subjt:  MNSSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMSSAYPNDHVGKLR

Query:  RLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLST
        RLLPGG+ MDVCTLLEETA+YIHCLS QVKVM AI+  HLST
Subjt:  RLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLST

A0A2N9I4P0 Uncharacterized protein1.99e-3552.35Show/hide
Query:  MNSSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRST---MSSAYPNDHVG
        +N++S   + AR F+R+ S++K    T  +S S  E+R+RS+RIKIAAYSSMA   G ++AW+RA+LFKL  RARH+ +M RRRS       A  ND  G
Subjt:  MNSSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRST---MSSAYPNDHVG

Query:  ------KLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS
              KLR+L+PGG  MD+C+LLEETA YI CLS QVKVM  IA H S
Subjt:  ------KLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS

A0A5D3BPL2 Transcription factor IBH14.16e-5672.54Show/hide
Query:  MNSSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMSSAYPNDHVGKLR
        +NS+SS FR ARTFLR FSRIKS+R  T AS    +L+R+S+RIK+ AYSSMARVAGP+RAWARALLFKL TR RHRTLMRR+R   +S  P+D VGKLR
Subjt:  MNSSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMSSAYPNDHVGKLR

Query:  RLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLST
        RLLPGG+ MDVCTLLEETA+YIHCLS QVKVM AI+  HLST
Subjt:  RLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLST

A0A6J1KS83 transcription factor IBH12.19e-8394.37Show/hide
Query:  MNSSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMSSAYPNDHVGKLR
        MNSSSSS RLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQR WARALLFKLNTRARHRT MRRR STM SAYP+DHVGKLR
Subjt:  MNSSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMSSAYPNDHVGKLR

Query:  RLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN
        RL+PGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS N
Subjt:  RLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN

SwissProt top hitse value%identityAlignment
Q01I07 Transcription factor IBH18.4e-1437.65Show/hide
Query:  SSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRR-----RRSTMSSAYPN----
        ++++   LA  FLR+ SRI    P T          RR+R I+ AAYSSMAR A P+RAW+RALL +   R R RTLMRR     RR  +++  P+    
Subjt:  SSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRR-----RRSTMSSAYPN----

Query:  ----------------------------DHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAI
                                         LRRL+PGG GM+  +LLEETADY+  L AQV++M  +
Subjt:  ----------------------------DHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAI

Q7XR02 Transcription factor IBH15.0e-1437.65Show/hide
Query:  SSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRR-----RRSTMSSAYPNDHVG
        ++++   LA  FLR+ SRI    P T          RR+R I+ AAYSSMAR A P+RAW+RALL ++  R R RTLMRR     RR  +++  P+    
Subjt:  SSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRR-----RRSTMSSAYPNDHVG

Query:  K--------------------------------LRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAI
        +                                LRRL+PGG GM+  +LLEETADY+  L AQV++M  +
Subjt:  K--------------------------------LRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAI

Q9SKX1 Transcription factor IBH11.1e-1339.42Show/hide
Query:  FLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVA-GPQRAWARALLFKLN---------TRARHRTLMRRRRSTMSSAYPNDHVGKLRRLL
        FL+S S ++ + P     +  +    R R+IK AAY SMAR A G  R W+RALL + +         +R + +   +RRRS   +    +   +LR L+
Subjt:  FLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVA-GPQRAWARALLFKLN---------TRARHRTLMRRRRSTMSSAYPNDHVGKLRRLL

Query:  PGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS
        PGG GM+   L+EETA YI CLS QVKVM  +   LS
Subjt:  PGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS

Arabidopsis top hitse value%identityAlignment
AT2G43060.1 ILI1 binding bHLH 17.8e-1539.42Show/hide
Query:  FLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVA-GPQRAWARALLFKLN---------TRARHRTLMRRRRSTMSSAYPNDHVGKLRRLL
        FL+S S ++ + P     +  +    R R+IK AAY SMAR A G  R W+RALL + +         +R + +   +RRRS   +    +   +LR L+
Subjt:  FLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVA-GPQRAWARALLFKLN---------TRARHRTLMRRRRSTMSSAYPNDHVGKLRRLL

Query:  PGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS
        PGG GM+   L+EETA YI CLS QVKVM  +   LS
Subjt:  PGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTCCTCCTCTTCTTCCTTCCGCCTCGCTCGGACCTTCCTCCGATCCTTCTCCCGGATAAAATCCCGAAGACCCACCACCGCTGCCTCTCGGTCCGCTTTCGAGCT
TAGACGCCGGAGTCGACGGATAAAAATCGCAGCCTACTCCTCCATGGCTCGCGTGGCTGGACCACAACGAGCATGGGCTAGAGCCCTCCTCTTCAAGCTCAATACTCGAG
CTAGACATAGGACTTTGATGAGACGCCGCCGTTCAACGATGTCCTCGGCCTACCCCAACGACCATGTCGGGAAGCTCCGCCGCTTACTTCCGGGCGGGGACGGAATGGAC
GTGTGCACCTTGCTGGAGGAAACTGCTGACTACATCCATTGCCTCTCCGCGCAGGTTAAGGTCATGAATGCCATAGCTCATCATTTATCAACAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATTCCTCCTCTTCTTCCTTCCGCCTCGCTCGGACCTTCCTCCGATCCTTCTCCCGGATAAAATCCCGAAGACCCACCACCGCTGCCTCTCGGTCCGCTTTCGAGCT
TAGACGCCGGAGTCGACGGATAAAAATCGCAGCCTACTCCTCCATGGCTCGCGTGGCTGGACCACAACGAGCATGGGCTAGAGCCCTCCTCTTCAAGCTCAATACTCGAG
CTAGACATAGGACTTTGATGAGACGCCGCCGTTCAACGATGTCCTCGGCCTACCCCAACGACCATGTCGGGAAGCTCCGCCGCTTACTTCCGGGCGGGGACGGAATGGAC
GTGTGCACCTTGCTGGAGGAAACTGCTGACTACATCCATTGCCTCTCCGCGCAGGTTAAGGTCATGAATGCCATAGCTCATCATTTATCAACAAATTGA
Protein sequenceShow/hide protein sequence
MNSSSSSFRLARTFLRSFSRIKSRRPTTAASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMSSAYPNDHVGKLRRLLPGGDGMD
VCTLLEETADYIHCLSAQVKVMNAIAHHLSTN