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CsGy0G000190 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy0G000190
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDNA topoisomerase 2-binding protein 1
Genome locationGy14Chr0:5355378..5355674
RNA-Seq ExpressionCsGy0G000190
SyntenyCsGy0G000190
Gene Ontology termsNA
InterPro domainsIPR001357 - BRCT domain
IPR036420 - BRCT domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637272.1 hypothetical protein CSA_021749, partial [Cucumis sativus]6.54e-7198.97Show/hide
Query:  DGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ
        DGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIY CVSQ
Subjt:  DGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ

KAE8637392.1 hypothetical protein CSA_004752, partial [Cucumis sativus]9.86e-7197.94Show/hide
Query:  DGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ
        DGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFT GTKYEAACKWGKQCITAEWIY CVSQ
Subjt:  DGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ

KAE8637478.1 hypothetical protein CSA_023906, partial [Cucumis sativus]1.13e-7096.94Show/hide
Query:  KDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ
        +DGCLWDTNGHI YSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIY CVSQ
Subjt:  KDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ

XP_031740456.1 DNA topoisomerase 2-binding protein 1-A-like [Cucumis sativus]4.76e-7196.97Show/hide
Query:  MKDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ
        MKDGCLWDTNGHI YSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTK+EAACKWGKQCITAEWIY CVSQ
Subjt:  MKDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ

XP_031745843.1 S-M checkpoint control protein rad4-like [Cucumis sativus]7.65e-7296.97Show/hide
Query:  MKDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ
        MKDGCLWDTNGHI YSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCF LGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIY CVSQ
Subjt:  MKDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ

TrEMBL top hitse value%identityAlignment
A0A0A0L359 BRCT domain-containing protein1.75e-7196.97Show/hide
Query:  MKDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ
        ++DGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIY CVSQ
Subjt:  MKDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ

A0A1S3BAL1 DNA topoisomerase 2-binding protein 1 isoform X33.82e-6091.92Show/hide
Query:  MKDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ
        ++DGCLW TNGHI YSPLPCCVPL GFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWG QCITAEWIY CV Q
Subjt:  MKDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ

A0A1S4DV57 DNA topoisomerase 2-binding protein 1 isoform X15.08e-6091.92Show/hide
Query:  MKDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ
        ++DGCLW TNGHI YSPLPCCVPL GFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWG QCITAEWIY CV Q
Subjt:  MKDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ

A0A1S4DV59 DNA topoisomerase 2-binding protein 1 isoform X25.01e-6091.92Show/hide
Query:  MKDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ
        ++DGCLW TNGHI YSPLPCCVPL GFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWG QCITAEWIY CV Q
Subjt:  MKDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ

A0A5A7U8G5 DNA topoisomerase 2-binding protein 1 isoform X24.96e-6091.92Show/hide
Query:  MKDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ
        ++DGCLW TNGHI YSPLPCCVPL GFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWG QCITAEWIY CV Q
Subjt:  MKDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ

SwissProt top hitse value%identityAlignment
Q5XIY8 PAX-interacting protein 12.9e-0536.67Show/hide
Query:  VSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWI
        V+ + D DR  L+ + ++ GA++   L +  T LICK   G KYE A +W   C+ A+W+
Subjt:  VSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWI

Q6NZQ4 PAX-interacting protein 11.3e-0538.33Show/hide
Query:  VSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWI
        V+ + D DR  L+ + ++ GAK+   L +  T LICK   G KYE A +W   C+ A+W+
Subjt:  VSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWI

Q6ZW49 PAX-interacting protein 11.7e-0538.33Show/hide
Query:  VSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWI
        V+ + D DR  L+ + ++ GAK+   L +  T LICK   G KYE A +W   C+ A+W+
Subjt:  VSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWI

Q7ZZY3 DNA topoisomerase 2-binding protein 1-B7.7e-0633.01Show/hide
Query:  LWDTNGHIFYSPLPCCVPLPGFENIRFC---VSQYDDKDRVLLRNLCFVLGAKFVEKLTKKV---------THLICKFTDGTKYEAACKWGKQCITAEWI
        L D + +  ++P+P    L G   +R C   VSQ+   +R  L  L  +LGAK  E   +K          +HL  K  +G+KYEAA KW    +T  W+
Subjt:  LWDTNGHIFYSPLPCCVPLPGFENIRFC---VSQYDDKDRVLLRNLCFVLGAKFVEKLTKKV---------THLICKFTDGTKYEAACKWGKQCITAEWI

Query:  YAC
          C
Subjt:  YAC

Q800K6 DNA topoisomerase 2-binding protein 1-A5.3e-0733.98Show/hide
Query:  LWDTNGHIFYSPLPCCVPLPGFENIRFC---VSQYDDKDRVLLRNLCFVLGAKFVEKLTKKV---------THLICKFTDGTKYEAACKWGKQCITAEWI
        L D + +  ++P+P    L G   +R C   VSQ+   +R  L  L  +LGAK  E   +K          THL+ K  +G+KYEAA KW    +T  W+
Subjt:  LWDTNGHIFYSPLPCCVPLPGFENIRFC---VSQYDDKDRVLLRNLCFVLGAKFVEKLTKKV---------THLICKFTDGTKYEAACKWGKQCITAEWI

Query:  YAC
          C
Subjt:  YAC

Arabidopsis top hitse value%identityAlignment
AT1G67180.1 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein1.4e-0734.72Show/hide
Query:  ENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ
        EN+   VS Y   DR  L  L    GA +V  +++ +THL+C   +G KY+ A K+G   +   W+  CV +
Subjt:  ENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ

AT1G77320.1 transcription coactivators3.5e-3057.58Show/hide
Query:  MKDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ
        +K GCL   + HI YSPLPC  PLPGFE++  C SQ+++K+  LLRNL  VLGA FVE+LT+KVTHLIC F  G KY  A KWG   +T +W+Y CV Q
Subjt:  MKDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ

AT1G77320.2 transcription coactivators3.5e-3057.58Show/hide
Query:  MKDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ
        +K GCL   + HI YSPLPC  PLPGFE++  C SQ+++K+  LLRNL  VLGA FVE+LT+KVTHLIC F  G KY  A KWG   +T +W+Y CV Q
Subjt:  MKDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ

AT4G02110.1 transcription coactivators3.5e-0629.35Show/hide
Query:  DTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL-TKKVTHLICKFTDGTKYEAACKWGK-QCITAEWIYACV
        D    I Y PL     +PG + +  C++ Y   DR  +  +  ++G +F + L   +VTHLIC   +G KYE A +  + + +   W+  C+
Subjt:  DTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL-TKKVTHLICKFTDGTKYEAACKWGK-QCITAEWIYACV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGATGGATGTTTGTGGGATACCAATGGGCACATTTTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGCCTGGATTTGAAAACATACGGTTTTGTGTTTCACAATA
TGATGACAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGCTGACAAAGAAGGTAACCCATCTAATATGCAAGTTCACCGATG
GGACAAAGTATGAGGCTGCTTGTAAATGGGGGAAACAATGCATTACAGCTGAATGGATATATGCGTGTGTCAGCCAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGATGGATGTTTGTGGGATACCAATGGGCACATTTTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGCCTGGATTTGAAAACATACGGTTTTGTGTTTCACAATA
TGATGACAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGCTGACAAAGAAGGTAACCCATCTAATATGCAAGTTCACCGATG
GGACAAAGTATGAGGCTGCTTGTAAATGGGGGAAACAATGCATTACAGCTGAATGGATATATGCGTGTGTCAGCCAG
Protein sequenceShow/hide protein sequence
MKDGCLWDTNGHIFYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTDGTKYEAACKWGKQCITAEWIYACVSQ