; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy0G000320 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy0G000320
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDNA topoisomerase 2-binding protein 1 isoform X2
Genome locationGy14Chr0:7076619..7078688
RNA-Seq ExpressionCsGy0G000320
SyntenyCsGy0G000320
Gene Ontology termsGO:0016853 - isomerase activity (molecular function)
InterPro domainsIPR001357 - BRCT domain
IPR036420 - BRCT domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637417.1 hypothetical protein CSA_021603 [Cucumis sativus]3.30e-12598.18Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH
        MKQKVHFTVECHGGIPRSTDVHSTYVSS+WVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKV+H
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH

Query:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQITLRFCCFSIIYVHIHAYPDRILDPLCLYFFS
        LICKFTDGTKYEAACKWGKQCITAEWIYECVRQ TLRFCCFSIIYVHIHAYPDRILDPLCLYFFS
Subjt:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQITLRFCCFSIIYVHIHAYPDRILDPLCLYFFS

KAE8649618.1 hypothetical protein Csa_012555 [Cucumis sativus]2.67e-9496.99Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH
        MKQKVHFTVECHGGIPRSTDVHSTYVSS+ V+SCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKV+H
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH

Query:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQ
        LICKFTDGTKYEAACKWGKQCITAEWIYECVRQ
Subjt:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQ

KAE8651483.1 hypothetical protein Csa_023682, partial [Cucumis sativus]3.43e-9494.78Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH
        MKQKVHFTVECHGGIPRSTDVHSTYVSS+ V+SCLEDGCLWDTNGHI YSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKV+H
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH

Query:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQI
        LICKFTDGT YEAACKWGKQCITAEWIYECV QI
Subjt:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQI

XP_031740454.1 DNA topoisomerase 2-binding protein 1-A-like [Cucumis sativus]6.80e-9595.52Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH
        MKQKVHFTVECHGGIPRSTDVHSTYVSS+ V+SCLEDGCLWDTNGHI YSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKV+H
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH

Query:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQI
        LICKFTDGTKYEAACKWGKQCITAEWIYECV QI
Subjt:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQI

XP_031745442.1 DNA topoisomerase 2-binding protein 1-A-like isoform X1 [Cucumis sativus]5.12e-9494.78Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH
        MKQKVHFTVECHGGIPRSTDVHSTYVSS+ V+SCLEDGCLWDTNGHI YSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKV+H
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH

Query:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQI
        LICKFTDGT YEAACKWGKQCITAEWIYECV QI
Subjt:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQI

TrEMBL top hitse value%identityAlignment
A0A1S3BAL1 DNA topoisomerase 2-binding protein 1 isoform X31.66e-8795.49Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH
        MKQKVHFTVECHGGIPRSTDVHSTYVSS+WV+SCLEDGCLW TNGHILYSPLPCCVPL GFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKV+H
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH

Query:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQ
        LICKFTDGTKYEAACKWG QCITAEWIYECVRQ
Subjt:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQ

A0A1S4DV57 DNA topoisomerase 2-binding protein 1 isoform X13.53e-8795.49Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH
        MKQKVHFTVECHGGIPRSTDVHSTYVSS+WV+SCLEDGCLW TNGHILYSPLPCCVPL GFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKV+H
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH

Query:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQ
        LICKFTDGTKYEAACKWG QCITAEWIYECVRQ
Subjt:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQ

A0A1S4DV59 DNA topoisomerase 2-binding protein 1 isoform X23.39e-8795.49Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH
        MKQKVHFTVECHGGIPRSTDVHSTYVSS+WV+SCLEDGCLW TNGHILYSPLPCCVPL GFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKV+H
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH

Query:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQ
        LICKFTDGTKYEAACKWG QCITAEWIYECVRQ
Subjt:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQ

A0A5A7U8G5 DNA topoisomerase 2-binding protein 1 isoform X23.29e-8795.49Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH
        MKQKVHFTVECHGGIPRSTDVHSTYVSS+WV+SCLEDGCLW TNGHILYSPLPCCVPL GFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKV+H
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH

Query:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQ
        LICKFTDGTKYEAACKWG QCITAEWIYECVRQ
Subjt:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQ

A0A5D3BRP8 DNA topoisomerase 2-binding protein 1 isoform X24.44e-8795.49Show/hide
Query:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH
        MKQKVHFTVECHGGIPRSTDVHSTYVSS+WV+SCLEDGCLW TNGHILYSPLPCCVPL GFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKV+H
Subjt:  MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSH

Query:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQ
        LICKFTDGTKYEAACKWG QCITAEWIYECVRQ
Subjt:  LICKFTDGTKYEAACKWGKQCITAEWIYECVRQ

SwissProt top hitse value%identityAlignment
Q6NZQ4 PAX-interacting protein 12.9e-0532.14Show/hide
Query:  VSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSHLICKFTDGTKYEAACKWGKQCITAEWI-------YECVRQITL-RFCCFSI
        V+ + D DR  L+ + ++ GAK+   L +  + LICK   G KYE A +W   C+ A+W+       +E +RQ+   R+  F++
Subjt:  VSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSHLICKFTDGTKYEAACKWGKQCITAEWI-------YECVRQITL-RFCCFSI

Q6ZW49 PAX-interacting protein 19.9e-0634.52Show/hide
Query:  VSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSHLICKFTDGTKYEAACKWGKQCITAEWI-------YECVRQITL-RFCCFSI
        V+ + D DR  L+ + ++ GAK+   L +  + LICK   G KYE A +W   C+ A+W+       +E +RQI   R+  FS+
Subjt:  VSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSHLICKFTDGTKYEAACKWGKQCITAEWI-------YECVRQITL-RFCCFSI

Q7ZZY3 DNA topoisomerase 2-binding protein 1-B2.3e-1034.45Show/hide
Query:  VSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFC---VSQYDDKDRVLLRNLCFVLGAKFVEKLTKKV---------SHLICKFTDGTKYEA
        V++ W+  C+E   L D + + L++P+P    L G   +R C   VSQ+   +R  L  L  +LGAK  E   +K          SHL  K  +G+KYEA
Subjt:  VSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFC---VSQYDDKDRVLLRNLCFVLGAKFVEKLTKKV---------SHLICKFTDGTKYEA

Query:  ACKWGKQCITAEWIYECVR
        A KW    +T  W+ +C R
Subjt:  ACKWGKQCITAEWIYECVR

Q800K6 DNA topoisomerase 2-binding protein 1-A1.0e-1033.61Show/hide
Query:  VSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFC---VSQYDDKDRVLLRNLCFVLGAKFVEKLTKKV---------SHLICKFTDGTKYEA
        V++ W+  C+E   L D + + L++P+P    L G   +R C   VSQ+   +R  L  L  +LGAK  E   +K          +HL+ K  +G+KYEA
Subjt:  VSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFC---VSQYDDKDRVLLRNLCFVLGAKFVEKLTKKV---------SHLICKFTDGTKYEA

Query:  ACKWGKQCITAEWIYECVR
        A KW    +T  W+ +C R
Subjt:  ACKWGKQCITAEWIYECVR

Q92547 DNA topoisomerase 2-binding protein 12.1e-0829.31Show/hide
Query:  VSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKK---------VSHLICKFTDGTKYEAACK
        V++ W+ +C++   L+D   + L++P+P    +   E+     SQ    ++  L  L  +LGA   E   +K          +HLI K   G+KYEAA K
Subjt:  VSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKK---------VSHLICKFTDGTKYEAACK

Query:  WGKQCITAEWIYECVR
        W    +T  W+ E  R
Subjt:  WGKQCITAEWIYECVR

Arabidopsis top hitse value%identityAlignment
AT1G67180.1 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein6.4e-0834.72Show/hide
Query:  ENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSHLICKFTDGTKYEAACKWGKQCITAEWIYECVRQ
        EN+   VS Y   DR  L  L    GA +V  +++ ++HL+C   +G KY+ A K+G   +   W+ ECV++
Subjt:  ENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSHLICKFTDGTKYEAACKWGKQCITAEWIYECVRQ

AT1G77320.1 transcription coactivators1.0e-4257.81Show/hide
Query:  HFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSHLICKF
        HFT+ECHGG   +    + YVSS+WV++CL+ GCL   + HILYSPLPC  PLPGFE++  C SQ+++K+  LLRNL  VLGA FVE+LT+KV+HLIC F
Subjt:  HFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSHLICKF

Query:  TDGTKYEAACKWGKQCITAEWIYECVRQ
          G KY  A KWG   +T +W+YECVRQ
Subjt:  TDGTKYEAACKWGKQCITAEWIYECVRQ

AT1G77320.2 transcription coactivators1.0e-4257.81Show/hide
Query:  HFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSHLICKF
        HFT+ECHGG   +    + YVSS+WV++CL+ GCL   + HILYSPLPC  PLPGFE++  C SQ+++K+  LLRNL  VLGA FVE+LT+KV+HLIC F
Subjt:  HFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSHLICKF

Query:  TDGTKYEAACKWGKQCITAEWIYECVRQ
          G KY  A KWG   +T +W+YECVRQ
Subjt:  TDGTKYEAACKWGKQCITAEWIYECVRQ

AT4G02110.1 transcription coactivators3.7e-0829.36Show/hide
Query:  VSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL-TKKVSHLICKFTDGTKYEAACKWGK-QCIT
        V+  WV    + G L D    ILY PL     +PG + +  C++ Y   DR  +  +  ++G +F + L   +V+HLIC   +G KYE A +  + + + 
Subjt:  VSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKL-TKKVSHLICKFTDGTKYEAACKWGK-QCIT

Query:  AEWIYECVR
          W+ +C++
Subjt:  AEWIYECVR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAGAAAGTGCACTTCACTGTTGAATGTCATGGTGGGATACCAAGGAGTACAGACGTTCATAGTACTTATGTGTCAAGTTATTGGGTTCAATCATGTTTAGAGGA
TGGATGTTTGTGGGATACCAATGGGCACATTCTCTATTCTCCTCTTCCTTGTTGTGTCCCTTTGCCTGGATTTGAAAACATACGGTTTTGTGTTTCACAATATGATGATA
AAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGCTGACAAAGAAGGTAAGCCATCTAATATGCAAGTTCACGGATGGGACAAAG
TATGAGGCTGCTTGTAAATGGGGGAAACAATGCATTACAGCTGAATGGATATATGAGTGTGTCAGACAGATAACTTTGCGATTTTGTTGCTTTTCAATTATATATGTTCA
TATACATGCATATCCTGATAGAATTCTAGACCCATTGTGTTTATATTTCTTCTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGCAGAAAGTGCACTTCACTGTTGAATGTCATGGTGGGATACCAAGGAGTACAGACGTTCATAGTACTTATGTGTCAAGTTATTGGGTTCAATCATGTTTAGAGGA
TGGATGTTTGTGGGATACCAATGGGCACATTCTCTATTCTCCTCTTCCTTGTTGTGTCCCTTTGCCTGGATTTGAAAACATACGGTTTTGTGTTTCACAATATGATGATA
AAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGCTGACAAAGAAGGTAAGCCATCTAATATGCAAGTTCACGGATGGGACAAAG
TATGAGGCTGCTTGTAAATGGGGGAAACAATGCATTACAGCTGAATGGATATATGAGTGTGTCAGACAGATAACTTTGCGATTTTGTTGCTTTTCAATTATATATGTTCA
TATACATGCATATCCTGATAGAATTCTAGACCCATTGTGTTTATATTTCTTCTCTTAG
Protein sequenceShow/hide protein sequence
MKQKVHFTVECHGGIPRSTDVHSTYVSSYWVQSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVSHLICKFTDGTK
YEAACKWGKQCITAEWIYECVRQITLRFCCFSIIYVHIHAYPDRILDPLCLYFFS