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CsGy0G002440 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy0G002440
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrotransposon gag protein
Genome locationGy14Chr0:7087914..7089285
RNA-Seq ExpressionCsGy0G002440
SyntenyCsGy0G002440
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055958.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.58e-9480.77Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF
        MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREK+IELDLEEVAQTNHA   IMSEA S RLIFE+R+SLVQFGTF
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF

Query:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLIHNEDMNF
        E +VV+F QE++ ED Q ++R IEEDDEGWI+VT RKKR+S P Q+E R Y+NYRRGNK QKNKKKKKT KLKL H ED +F
Subjt:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLIHNEDMNF

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]5.32e-11098.91Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF
        MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF

Query:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLIHNEDMNFS
        EPIVVQFFQEISYEDPQGEKRPIEEDDEGWI+VTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKL+HNEDMNFS
Subjt:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLIHNEDMNFS

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]5.32e-11098.91Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF
        MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF

Query:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLIHNEDMNFS
        EPIVVQFFQEISYEDPQGEKRPIEEDDEGWI+VTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKL+HNEDMNFS
Subjt:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLIHNEDMNFS

XP_031740568.1 uncharacterized protein LOC116403508 [Cucumis sativus]5.32e-11098.91Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF
        MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF

Query:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLIHNEDMNFS
        EPIVVQFFQEISYEDPQGEKRPIEEDDEGWI+VTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKL+HNEDMNFS
Subjt:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLIHNEDMNFS

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]5.32e-11098.91Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF
        MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF

Query:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLIHNEDMNFS
        EPIVVQFFQEISYEDPQGEKRPIEEDDEGWI+VTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKL+HNEDMNFS
Subjt:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLIHNEDMNFS

TrEMBL top hitse value%identityAlignment
A0A5A7U0N3 Retrotransposon gag protein5.41e-8579.43Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF
        +L+QLLEK LIQLPECKRPEQAGKVD PN+CKYHRVISHPVEK FVLKELILRLAREK+IELDLEEVAQTNH  VTIMS+A   RLIFEQR+SLVQFGTF
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF

Query:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLI
        EP VVQF QEI+ ED Q ++R +EEDDEGWI+VT RKKR+S P Q+ESR Y NYRRGNK QKNKKKKKT K KL+
Subjt:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLI

A0A5A7UBT4 Retrotransposon gag protein6.62e-9280.22Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF
        MLEQLLEKQLIQLPECKR EQA KVDDPNYCKYHRVISHPVEKCFVLKELILRLAREK+IE+DLEEVAQTNH  V IMSEA   RLIFEQRKSLVQF TF
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF

Query:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLIHNEDMNF
        EP+VVQF QE++ ED Q ++R IEEDDEGWI+VT RKKR+S   Q+ESR Y+NYRRGNK QKNKKKKKT KLKL+H ED +F
Subjt:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLIHNEDMNF

A0A5A7ULK6 Retrotransposon gag protein2.70e-9480.77Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF
        MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREK+IELDLEEVAQTNHA   IMSEA S RLIFE+R+SLVQFGTF
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF

Query:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLIHNEDMNF
        E +VV+F QE++ ED Q ++R IEEDDEGWI+VT RKKR+S P Q+E R Y+NYRRGNK QKNKKKKKT KLKL H ED +F
Subjt:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLIHNEDMNF

A0A5A7USZ1 Retrotransposon gag protein1.20e-8979.89Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF
        MLEQLLEKQLIQL ECKRPEQA KVDD NYCKYHRVI H VEKCFVLKELILRLAR+K+IELDLEEVAQTNH  VTIMSEA S RLIFEQR+SLVQFGTF
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF

Query:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLIHNED
        EP +VQF QE++ ED Q ++R IEEDDEGWI+VT RKKR+S  TQ+ESR Y+NYRRGNK QKNKKKKKT K KL+H ED
Subjt:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLIHNED

A0A5A7V7Z6 Ty3-gypsy retrotransposon protein1.45e-9181.87Show/hide
Query:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF
        MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREK+IELDLEEVAQTNHA   IMSEA S RLIFEQR+SLVQFGTF
Subjt:  MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTF

Query:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLIHNEDMNF
        EP+VV+F QE++ ED Q  +R IEEDDEGWI+VT RKKR+S P Q+E R Y+NYRRGNK QKNKKKKKT KLKL+H ED +F
Subjt:  EPIVVQFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLIHNEDMNF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGAGCAACTACTAGAGAAGCAGCTGATCCAGCTGCCAGAATGTAAACGACCTGAGCAAGCAGGAAAGGTAGATGATCCCAATTACTGCAAGTATCATCGG
GTCATCAGTCATCCAGTAGAGAAATGCTTCGTGCTGAAGGAGCTAATTCTAAGGTTGGCTCGTGAGAAAAGGATTGAGCTAGATTTGGAGGAAGTAGCTCAAACA
AACCACGCTGAAGTGACGATAATGTCTGAGGCTTCTTCGTCGAGATTGATTTTTGAGCAAAGGAAAAGCTTGGTCCAGTTCGGGACTTTTGAGCCTATAGTTGTC
CAATTCTTTCAGGAAATCTCATACGAGGATCCTCAAGGAGAGAAAAGACCAATCGAAGAAGACGATGAAGGGTGGATAATGGTGACCCACCGAAAGAAAAGACAG
TCGATCCCGACCCAAAGAGAGTCTCGCTCTTACCAAAACTATAGAAGAGGAAATAAGACTCAAAAGAATAAGAAAAAGAAGAAGACTCATAAGCTTAAGCTCATA
CATAATGAAGACATGAATTTCTCTTGA
mRNA sequenceShow/hide mRNA sequence
CTGAAATTCTCCAAAGGAAAGGAAGCGAGGGTTGAAAAGAAGGATGATGGAAGCGAAAGGCGACGTCTGACTTTAAAAGAAAGGCAGGAAAAAGTTTACCCATTT
CCTGATTCAGATATCGCTGACATGCTAGAGCAACTACTAGAGAAGCAGCTGATCCAGCTGCCAGAATGTAAACGACCTGAGCAAGCAGGAAAGGTAGATGATCCC
AATTACTGCAAGTATCATCGGGTCATCAGTCATCCAGTAGAGAAATGCTTCGTGCTGAAGGAGCTAATTCTAAGGTTGGCTCGTGAGAAAAGGATTGAGCTAGAT
TTGGAGGAAGTAGCTCAAACAAACCACGCTGAAGTGACGATAATGTCTGAGGCTTCTTCGTCGAGATTGATTTTTGAGCAAAGGAAAAGCTTGGTCCAGTTCGGG
ACTTTTGAGCCTATAGTTGTCCAATTCTTTCAGGAAATCTCATACGAGGATCCTCAAGGAGAGAAAAGACCAATCGAAGAAGACGATGAAGGGTGGATAATGGTG
ACCCACCGAAAGAAAAGACAGTCGATCCCGACCCAAAGAGAGTCTCGCTCTTACCAAAACTATAGAAGAGGAAATAAGACTCAAAAGAATAAGAAAAAGAAGAAG
ACTCATAAGCTTAAGCTCATACATAATGAAGACATGAATTTCTCTTGACCTCAGCGCTTAGTGACCTTGGCAGACTTCCTTCCAAAAAGTTTCCTTTGTGATCAT
CAGGATGAAGACCCAGAAGTCGTTGCGTGTCATGCTATCAACACAACGGAGGAAGAAATAATCCCTCCAAGATCACTAGAAGGAGAGGGAGTATCAAAGGACCTT
TCAAGGTTTAATGTAGAGGATCTATTATCACTTCCTCAAGAGACCAAAACCATCCTTATTGATGCATTGCTAAATTCAAGAGCATCAAGTTCGAGTACTCCGACT
ATGACATATGAGAGTGGTTCTTATTGTATGTCTATAGACTTCTCAGATGAGGATTTGTTGTTGGGATCTAAACTTCATAATAGACCTTTGTATGTTTCTGGATAC
GTTCGAGAACAGAGAGTCGATCGAATTCTCATTGATAATGGCTCAGCTGTCAACATAATGCCAAAGTCGACTATGTGGCAATTAGGCATCTTGATGGACGAGCTC
TCAAATAGCAAGCTAGTAATTCAAGGTTTTAACCAAGGTAGCCAAAGAGCAATAGGCATGATACGGTTAGAACTCATAATTGGCGACCTAAAGGCCAGTGCATTG
TTTCATGTCATAGACTCAAGGACTACTTACAAGTTGTTACTAGGGCGTCCTTGGATTCATGGAAACGGAGTAGTAACTTCAACACTGCATCAGTGCTTCAATTTT
ATCAGGA
Protein sequenceShow/hide protein sequence
MLEQLLEKQLIQLPECKRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASSSRLIFEQRKSLVQFGTFEPIVV
QFFQEISYEDPQGEKRPIEEDDEGWIMVTHRKKRQSIPTQRESRSYQNYRRGNKTQKNKKKKKTHKLKLIHNEDMNFS