; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy0G006030 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy0G006030
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationGy14Chr0:18971161..18972129
RNA-Seq ExpressionCsGy0G006030
SyntenyCsGy0G006030
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8637138.1 hypothetical protein CSA_015445 [Cucumis sativus]1.40e-4854.82Show/hide
Query:  HPSKSTRH-----PAVTPTRRRGPAFRLKQHPSSKKQSQVISHPQEQASPNNAHNKVQASSKQARPSTSTRLPALAPHPTLGDKPTFRPSPSIKQEAITR
        HPSK  +      P   PTRRRGPAFRLKQHPSSKKQSQVISHPQEQASPNNAHNKVQASSKQARPSTSTRLPAL PHPT G+KPTFRP+PS KQEAI R
Subjt:  HPSKSTRH-----PAVTPTRRRGPAFRLKQHPSSKKQSQVISHPQEQASPNNAHNKVQASSKQARPSTSTRLPALAPHPTLGDKPTFRPSPSIKQEAITR

Query:  PSRILQNKRAQTTPTTECKHHPSKPIQAHQLDIPHSLPTRRKGSVIRPNLSNNHEAIASHLVLSRASKPGRRPQQGASIIQARPPEYFNSTSRSYFP
                                                                   HLV SR S+P RRPQQ ASIIQA P ++ NSTSRS+ P
Subjt:  PSRILQNKRAQTTPTTECKHHPSKPIQAHQLDIPHSLPTRRKGSVIRPNLSNNHEAIASHLVLSRASKPGRRPQQGASIIQARPPEYFNSTSRSYFP

KAE8637438.1 hypothetical protein CSA_004616 [Cucumis sativus]1.81e-4453.97Show/hide
Query:  HPSKSTRH-----PAVTPTRRRGPAFRLKQHPSSKKQSQVISHPQEQASPNNAHNKVQASSKQARPSTSTRLPALAPHPTLGDKPTFRPSPSIKQEAITR
        HPSK  +      P   PTRRRGPAFRLKQHPSSKKQSQVISHPQEQASPNNAHNKVQASSKQARPSTSTRLPAL PHPT G+KPTFRP+PS KQEAI R
Subjt:  HPSKSTRH-----PAVTPTRRRGPAFRLKQHPSSKKQSQVISHPQEQASPNNAHNKVQASSKQARPSTSTRLPALAPHPTLGDKPTFRPSPSIKQEAITR

Query:  PSRILQNKRAQTTPTTECKHHPSKPIQAHQLDIPHSLPTRRKGSVIRPNLSNNHEAIASHLVLSRASKPGRRPQQGASIIQARPPEYFN
                                                                   HLV SR S+P RRPQQ ASIIQA P ++ N
Subjt:  PSRILQNKRAQTTPTTECKHHPSKPIQAHQLDIPHSLPTRRKGSVIRPNLSNNHEAIASHLVLSRASKPGRRPQQGASIIQARPPEYFN

KAE8637544.1 hypothetical protein CSA_017400 [Cucumis sativus]5.67e-9374.78Show/hide
Query:  PNDAHNKVQASSKQPHPSTSTRLPALTPHPTLGKNRHSDQTLPPSKKQSKDISYPREQATPNDTHNKVQASSKQAHPSKSTRH-----PAVTPTRRRGPA
        P   H KVQASSKQPHPSTSTRLPALTPHPTLG+     QTLPPSKKQSKDISYPREQATPND H K +      HPSK  +      P   PTRRRGPA
Subjt:  PNDAHNKVQASSKQPHPSTSTRLPALTPHPTLGKNRHSDQTLPPSKKQSKDISYPREQATPNDTHNKVQASSKQAHPSKSTRH-----PAVTPTRRRGPA

Query:  FRLKQHPSSKKQSQVISHPQEQASPNNAHNKVQASSKQARPSTSTRLPALAPHPTLG-DKPTFRPSPSIKQEAITRPSRILQNKRAQTTPTTECKHHPSK
        FRLKQHPSSKKQSQVISHPQEQASPNNAHNKVQASSKQARPSTSTR PAL P    G D PT    PSIKQEAITRPSRIL+NK+AQTTPTT+CKHHPSK
Subjt:  FRLKQHPSSKKQSQVISHPQEQASPNNAHNKVQASSKQARPSTSTRLPALAPHPTLG-DKPTFRPSPSIKQEAITRPSRILQNKRAQTTPTTECKHHPSK

Query:  PIQAHQLDIPHSLPTRRKGSVIRPNL
        PIQAHQLDIPHS       + IRP L
Subjt:  PIQAHQLDIPHSLPTRRKGSVIRPNL

KAE8637546.1 hypothetical protein CSA_017402, partial [Cucumis sativus]9.51e-3998.55Show/hide
Query:  NKRAQTTPTTECKHHPSKPIQAHQLDIPHSLPTRRKGSVIRPNLSNNHEAIASHLVLSRASKPGRRPQQ
        NKRAQTTPTTECKHHPSKPIQAHQLDIPHSLPTRRKGSVIRPN SNNHEAIASHLVLSRASKPGRRPQQ
Subjt:  NKRAQTTPTTECKHHPSKPIQAHQLDIPHSLPTRRKGSVIRPNLSNNHEAIASHLVLSRASKPGRRPQQ

KAE8637548.1 hypothetical protein CSA_023857, partial [Cucumis sativus]4.71e-10471.15Show/hide
Query:  QASPNDAHNKVQASSKQPHPSTSTRLPALTPHPTLGKNRHSDQTLPPSKKQSKDISYPREQATPNDTHNKVQASSKQAHPSKSTRHPAVTPTRRRGPAFR
        QASP+   N    S   P     T +P    H               ++K S+ +   R Q TP        +   QAH       P   PTR RGPAFR
Subjt:  QASPNDAHNKVQASSKQPHPSTSTRLPALTPHPTLGKNRHSDQTLPPSKKQSKDISYPREQATPNDTHNKVQASSKQAHPSKSTRHPAVTPTRRRGPAFR

Query:  LKQHPSSKKQSQVISHPQEQASPNNAHNKVQASSKQARPSTSTRLPALAPHPTLGDKPTFRPSPSIKQEAITRPSRILQNKRAQTTPTTECKHHPSKPIQ
        LKQHPSSKKQSQVISHPQEQASPNNAHNKVQASSKQARPSTSTRLPALAPHPTLGDKPTFRPSPSIKQEAITRPSRIL+NKRAQTTPTTECKHHPSKPIQ
Subjt:  LKQHPSSKKQSQVISHPQEQASPNNAHNKVQASSKQARPSTSTRLPALAPHPTLGDKPTFRPSPSIKQEAITRPSRILQNKRAQTTPTTECKHHPSKPIQ

Query:  AHQLDIPHSLPTRRKGSVIRPNLSNNHEAIASHLVLSRASKPGRRPQQGASII
        AHQLDIPHSLPTRRKGSVIRPN SNNHEAIASHLVLSRASKPGRRPQQGASII
Subjt:  AHQLDIPHSLPTRRKGSVIRPNLSNNHEAIASHLVLSRASKPGRRPQQGASII

TrEMBL top hitse value%identityAlignment
A0A5A7SSW5 Uncharacterized protein3.00e-1050Show/hide
Query:  IPHSLPTRRKGSV-IRPNLSNNHEAIASHLVLSRASKPGRRPQQGASIIQARPPEYFNSTSRSYFPIDGRTWSNDD
        I  S   +RK  V +R N S  H+ IAS LV  R S P    QQG SII+  P EY NSTSRS+ P D RTW ++D
Subjt:  IPHSLPTRRKGSV-IRPNLSNNHEAIASHLVLSRASKPGRRPQQGASIIQARPPEYFNSTSRSYFPIDGRTWSNDD

A0A5A7UP03 Uncharacterized protein1.18e-0532.09Show/hide
Query:  ASPNDAHNKVQASSKQPHPSTSTRLPALTPHPTLGKNRHSDQTLPPSKKQSKDISYPREQATPNDTHNKVQASSK--QAHPSK---STRHPAVTPTRRRG
        ++P    N VQA SKQ  P     +P   P    G  R +DQ +PPSKKQS         +TP       Q SS+  QA PSK   ST H    P R  G
Subjt:  ASPNDAHNKVQASSKQPHPSTSTRLPALTPHPTLGKNRHSDQTLPPSKKQSKDISYPREQATPNDTHNKVQASSK--QAHPSK---STRHPAVTPTRRRG

Query:  PAF-RLKQHPSS---------------------------------------------------------------KKQSQVISHPQEQASPNNAHNKVQA
        P F +L+ +PS+                                                               KKQ Q I +   Q     +HN+VQA
Subjt:  PAF-RLKQHPSS---------------------------------------------------------------KKQSQVISHPQEQASPNNAHNKVQA

Query:  SSKQARPSTSTRLPALAPHPTLGDKPTFRPSPSIKQEAITRP-SRILQNKRAQTTPTTECKHHPSKPI
         SKQA PSTSTR  AL    T G +    P+    Q  I R  S I  +K A+ T TT  KH+PSKPI
Subjt:  SSKQARPSTSTRLPALAPHPTLGDKPTFRPSPSIKQEAITRP-SRILQNKRAQTTPTTECKHHPSKPI

A0A5D3BRV3 Retrovirus-related Pol polyprotein from transposon TNT 1-949.84e-0858.46Show/hide
Query:  AHNKVQASSKQPHPSTSTRLPALTPHPTLGKNRHSDQTLPPSKKQSKDISYPREQATPNDTHNKV
        AHN+VQA SKQ H STSTR PALTP  T  K+RHS QT PPS KQS+ +SY   +A  +  HN++
Subjt:  AHNKVQASSKQPHPSTSTRLPALTPHPTLGKNRHSDQTLPPSKKQSKDISYPREQATPNDTHNKV

A0A5D3BW21 Uncharacterized protein5.55e-1333.33Show/hide
Query:  AHNKVQASSKQPHPSTSTRLPALTPH-PTLGKNRHS---DQTLPPSKKQSKDISYPREQA------TPNDTHNKVQASSKQAHPSKSTRHPAVTPTRRRG
        AH +VQA SKQ +PS +  L + +   P +G  +HS   DQTLPP+KKQS+DISY  +QA      TP   H       ++AHPS STRHP +TP    G
Subjt:  AHNKVQASSKQPHPSTSTRLPALTPH-PTLGKNRHS---DQTLPPSKKQSKDISYPREQA------TPNDTHNKVQASSKQAHPSKSTRHPAVTPTRRRG

Query:  ---PAFRLKQHPSSKKQSQVISHPQE-QASPNNAHNKVQASSKQARPSTSTRLPALAPHPTLGDKPTFRPSPSIKQEAITRPSRILQNKRAQTTPTTECK
           P   + +  S++K S++ ++    + +PN   + V+AS  + +  T +         +L D   +R   S+       P    +    + T T  C+
Subjt:  ---PAFRLKQHPSSKKQSQVISHPQE-QASPNNAHNKVQASSKQARPSTSTRLPALAPHPTLGDKPTFRPSPSIKQEAITRPSRILQNKRAQTTPTTECK

Query:  HHPSKPIQAHQLDIPHSLPTRRKGSVIRPNLSNN-HEAIASHLVLSRASKPGRRPQQGASIIQARPPEYFNST
        H  S PI       P SL  RR    +RPN S+  H+AIAS+LV SR S  G         +  +     NST
Subjt:  HHPSKPIQAHQLDIPHSLPTRRKGSVIRPNLSNN-HEAIASHLVLSRASKPGRRPQQGASIIQARPPEYFNST

A0A5D3DBP5 Uncharacterized protein1.05e-0532.92Show/hide
Query:  HSDQTLPPSKKQSKDISYPREQATPNDTHNKVQASSKQAHPSKSTRHPAVTPTRRRGPAFRLKQHPSSKKQSQVISHPQEQASPNNAHNKVQASSKQARP
        HS+QTLPP+KKQ +DI Y   Q     +HN+VQA SKQA+PS STRH A+T    +G                                           
Subjt:  HSDQTLPPSKKQSKDISYPREQATPNDTHNKVQASSKQAHPSKSTRHPAVTPTRRRGPAFRLKQHPSSKKQSQVISHPQEQASPNNAHNKVQASSKQARP

Query:  STSTRLPALAPHPTLGDKPTFRPSPSIKQEAITRP-SRILQNKRAQTTPTTECKHHPSKPI
           TR+P++             P+    Q  I R  S I  +K A+ T TT  KH+PSKPI
Subjt:  STSTRLPALAPHPTLGDKPTFRPSPSIKQEAITRP-SRILQNKRAQTTPTTECKHHPSKPI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGCTCTCTTGTTCGTTCTTCAACCCACGTTCGTTTAGCCATCAGGCAACCGAAAAACCATCGTGCGCAGCGGGACGAGCCCTTCCGCCAAGCAGGGACCGATCGCAAGGT
CATCTCGTATCCTCAAGGACAAGCAAGCCCGAACGACGCCCACAACAAAGTGCAGGCATCATCCAAGCAACCCCATCCAAGCACATCCACTCGACTTCCCGCTCTCACTC
CCCACCCAACGTTGGGGAAAAACCGACATTCCGACCAAACCCTTCCACCAAGCAAGAAGCAATCGAAAGACATCTCGTATCCTCGAGAACAAGCAACCCCAAACGACACC
CACAACAAAGTGCAAGCATCATCCAAGCAAGCCCATCCAAGCAAATCAACTCGACATCCCGCTGTCACTCCCACCCGACGTAGGGGCCCAGCATTCCGACTAAAGCAACA
TCCGTCAAGCAAGAAGCAATCGCAAGTCATCTCGCATCCTCAAGAACAAGCAAGCCCAAACAACGCCCACAACAAAGTGCAAGCATCATCCAAGCAAGCCCGTCCAAGCA
CATCAACTCGACTTCCCGCTCTCGCTCCCCACCCGACGTTGGGGGATAAACCGACATTCCGACCAAGCCCTTCCATCAAGCAAGAAGCAATCACAAGACCATCTCGTATC
CTCCAGAACAAGCGAGCCCAAACGACGCCCACAACAGAGTGCAAGCATCATCCAAGCAAGCCCATCCAAGCACATCAACTCGACATCCCGCACTCGCTACCCACCCGACG
TAAAGGCTCGGTAATTCGACCAAACCTATCCAACAACCACGAAGCAATCGCAAGTCATCTCGTATTGTCAAGAGCAAGCAAGCCCGGACGACGCCCACAACAAGGTGCAA
GCATTATCCAGGCCCGCCCACCCGAGTACTTCAACTCGACATCCCGCTCATACTTCCCGATCGACGGAAGGACGTGGTCGAATGACGAC
mRNA sequenceShow/hide mRNA sequence
CGCTCTCTTGTTCGTTCTTCAACCCACGTTCGTTTAGCCATCAGGCAACCGAAAAACCATCGTGCGCAGCGGGACGAGCCCTTCCGCCAAGCAGGGACCGATCGCAAGGT
CATCTCGTATCCTCAAGGACAAGCAAGCCCGAACGACGCCCACAACAAAGTGCAGGCATCATCCAAGCAACCCCATCCAAGCACATCCACTCGACTTCCCGCTCTCACTC
CCCACCCAACGTTGGGGAAAAACCGACATTCCGACCAAACCCTTCCACCAAGCAAGAAGCAATCGAAAGACATCTCGTATCCTCGAGAACAAGCAACCCCAAACGACACC
CACAACAAAGTGCAAGCATCATCCAAGCAAGCCCATCCAAGCAAATCAACTCGACATCCCGCTGTCACTCCCACCCGACGTAGGGGCCCAGCATTCCGACTAAAGCAACA
TCCGTCAAGCAAGAAGCAATCGCAAGTCATCTCGCATCCTCAAGAACAAGCAAGCCCAAACAACGCCCACAACAAAGTGCAAGCATCATCCAAGCAAGCCCGTCCAAGCA
CATCAACTCGACTTCCCGCTCTCGCTCCCCACCCGACGTTGGGGGATAAACCGACATTCCGACCAAGCCCTTCCATCAAGCAAGAAGCAATCACAAGACCATCTCGTATC
CTCCAGAACAAGCGAGCCCAAACGACGCCCACAACAGAGTGCAAGCATCATCCAAGCAAGCCCATCCAAGCACATCAACTCGACATCCCGCACTCGCTACCCACCCGACG
TAAAGGCTCGGTAATTCGACCAAACCTATCCAACAACCACGAAGCAATCGCAAGTCATCTCGTATTGTCAAGAGCAAGCAAGCCCGGACGACGCCCACAACAAGGTGCAA
GCATTATCCAGGCCCGCCCACCCGAGTACTTCAACTCGACATCCCGCTCATACTTCCCGATCGACGGAAGGACGTGGTCGAATGACGAC
Protein sequenceShow/hide protein sequence
RSLVRSSTHVRLAIRQPKNHRAQRDEPFRQAGTDRKVISYPQGQASPNDAHNKVQASSKQPHPSTSTRLPALTPHPTLGKNRHSDQTLPPSKKQSKDISYPREQATPNDT
HNKVQASSKQAHPSKSTRHPAVTPTRRRGPAFRLKQHPSSKKQSQVISHPQEQASPNNAHNKVQASSKQARPSTSTRLPALAPHPTLGDKPTFRPSPSIKQEAITRPSRI
LQNKRAQTTPTTECKHHPSKPIQAHQLDIPHSLPTRRKGSVIRPNLSNNHEAIASHLVLSRASKPGRRPQQGASIIQARPPEYFNSTSRSYFPIDGRTWSNDD