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CsGy1G006390 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy1G006390
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionpeptidyl-tRNA hydrolase, chloroplastic
Genome locationGy14Chr1:4154470..4154777
RNA-Seq ExpressionCsGy1G006390
SyntenyCsGy1G006390
Gene Ontology termsGO:0004045 - aminoacyl-tRNA hydrolase activity (molecular function)
InterPro domainsIPR001328 - Peptidyl-tRNA hydrolase
IPR036416 - Peptidyl-tRNA hydrolase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ98984.1 peptidyl-tRNA hydrolase [Cucumis melo var. makuwa]7.07e-2775Show/hide
Query:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQIS
        +GIGRPPGKMDAANFVLRPFN++ERE            +LNFTLQVG DAIRILLLEGFNKSATFVNTN  LEQIS
Subjt:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQIS

XP_004137468.1 peptidyl-tRNA hydrolase, chloroplastic [Cucumis sativus]5.16e-2876.32Show/hide
Query:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQIS
        +GIGRPPGKMDAANFVLRPFN++ERE            +LNFTLQVGEDAIRILLLEGFNKSATFVNTN +LEQIS
Subjt:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQIS

XP_008457243.1 PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Cucumis melo]7.99e-2775Show/hide
Query:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQIS
        +GIGRPPGKMDAANFVLRPFN++ERE            +LNFTLQVG DAIRILLLEGFNKSATFVNTN  LEQIS
Subjt:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQIS

XP_022994510.1 peptidyl-tRNA hydrolase, chloroplastic isoform X4 [Cucurbita maxima]1.25e-2570.67Show/hide
Query:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQI
        +GIGRPPGKMDAANFV+RPFN++ERE            +L+FT+QVG DAIRILLLEGFNKSATFVNTN  LEQI
Subjt:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQI

XP_038893864.1 peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Benincasa hispida]4.79e-2674.67Show/hide
Query:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQI
        +GIGRPPGKMDAANFVLRPFN++ERE            +LNFTLQVG DAIRILLLEGFNKSATFVNTN  LEQI
Subjt:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQI

TrEMBL top hitse value%identityAlignment
A0A0A0LVQ7 Uncharacterized protein2.50e-2876.32Show/hide
Query:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQIS
        +GIGRPPGKMDAANFVLRPFN++ERE            +LNFTLQVGEDAIRILLLEGFNKSATFVNTN +LEQIS
Subjt:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQIS

A0A1S3C5R3 peptidyl-tRNA hydrolase, chloroplastic3.87e-2775Show/hide
Query:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQIS
        +GIGRPPGKMDAANFVLRPFN++ERE            +LNFTLQVG DAIRILLLEGFNKSATFVNTN  LEQIS
Subjt:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQIS

A0A5D3BIU3 Peptidyl-tRNA hydrolase3.42e-2775Show/hide
Query:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQIS
        +GIGRPPGKMDAANFVLRPFN++ERE            +LNFTLQVG DAIRILLLEGFNKSATFVNTN  LEQIS
Subjt:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQIS

A0A6J1C906 peptidyl-tRNA hydrolase, chloroplastic1.11e-2573.33Show/hide
Query:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQI
        +GIGRPPGKMDAANFVLRPFN++ERE            +LNFTLQVG +AIRILLLEGFNKSATFVNTN  LEQI
Subjt:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQI

A0A6J1K1D8 peptidyl-tRNA hydrolase, chloroplastic isoform X46.03e-2670.67Show/hide
Query:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQI
        +GIGRPPGKMDAANFV+RPFN++ERE            +L+FT+QVG DAIRILLLEGFNKSATFVNTN  LEQI
Subjt:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQI

SwissProt top hitse value%identityAlignment
Q5N9Q7 Peptidyl-tRNA hydrolase, mitochondrial5.8e-1552.63Show/hide
Query:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQIS
        +GIGRPPGKMD ANFVLRPFN +E+E            +L+F    G +A+RI+ LEGFNKSAT+VNT  + E ++
Subjt:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQIS

Q5ZCL8 Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic1.1e-0541.94Show/hide
Query:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKS
        +GIG PPGKMD   F+L+ F+ EER             Q++  L+ G DA+R L+L+GF+ S
Subjt:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKS

Q8FQV6 Peptidyl-tRNA hydrolase1.6e-0464.29Show/hide
Query:  LGIGRPPGKMDAANFVLRPFNEEERESV
        +GIGRPPG+MD A FVL+PF+++E++SV
Subjt:  LGIGRPPGKMDAANFVLRPFNEEERESV

Q8GW64 Peptidyl-tRNA hydrolase, chloroplastic9.5e-1860.53Show/hide
Query:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQIS
        +GIGRPPGKMD ANFVLR FN +E+E            +L+ T Q G +AIRILLLEGFNKSATFVNT  ++EQ+S
Subjt:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQIS

Q9M5P4 Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic1.4e-0540.3Show/hide
Query:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVN
        +GIG PPGKMD   F+L+ F+ EER             Q++  L+ G DA+R L+L+GF+ S    N
Subjt:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVN

Arabidopsis top hitse value%identityAlignment
AT1G18440.1 Peptidyl-tRNA hydrolase family protein6.7e-1960.53Show/hide
Query:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQIS
        +GIGRPPGKMD ANFVLR FN +E+E            +L+ T Q G +AIRILLLEGFNKSATFVNT  ++EQ+S
Subjt:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQIS

AT5G16140.1 Peptidyl-tRNA hydrolase family protein7.2e-0532.84Show/hide
Query:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVN
        +GIG+PPG MD   F+L+ F+  E++            Q+   L+ G +A++ L+L GFN+  +  N
Subjt:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVN

AT5G16140.2 Peptidyl-tRNA hydrolase family protein7.2e-0532.84Show/hide
Query:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVN
        +GIG+PPG MD   F+L+ F+  E++            Q+   L+ G +A++ L+L GFN+  +  N
Subjt:  LGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAAAATATTCTAGGCATAGGGAGACCTCCAGGGAAAATGGATGCAGCAAATTTTGTTCTTCGCCCCTTCAACGAAGAAGAACGAGAAAGTGTTTTTGAC
CATCGAAATGGAATCATTTCTTTTCAGTTGAACTTTACATTGCAAGTTGGCGAAGACGCAATACGGATTCTTTTGCTCGAGGGGTTCAACAAAAGCGCAACATTT
GTCAACACCAACATGGCTCTGGAACAAATAAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAAAATATTCTAGGCATAGGGAGACCTCCAGGGAAAATGGATGCAGCAAATTTTGTTCTTCGCCCCTTCAACGAAGAAGAACGAGAAAGTGTTTTTGAC
CATCGAAATGGAATCATTTCTTTTCAGTTGAACTTTACATTGCAAGTTGGCGAAGACGCAATACGGATTCTTTTGCTCGAGGGGTTCAACAAAAGCGCAACATTT
GTCAACACCAACATGGCTCTGGAACAAATAAGTTGA
Protein sequenceShow/hide protein sequence
MGENILGIGRPPGKMDAANFVLRPFNEEERESVFDHRNGIISFQLNFTLQVGEDAIRILLLEGFNKSATFVNTNMALEQIS