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CsGy1G007455 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy1G007455
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDNA-directed RNA polymerases II, IV and V subunit 12
Genome locationGy14Chr1:4777026..4779109
RNA-Seq ExpressionCsGy1G007455
SyntenyCsGy1G007455
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006591 - RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
IPR029040 - RNA polymerase subunit RPABC4/transcription elongation factor Spt4
IPR039747 - DNA-directed RNA polymerases I, II, and III subunit RPABC4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG56999.1 hypothetical protein EZV62_018312 [Acer yangbiense]8.55e-3198.04Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

XP_003534102.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine max]1.22e-3098.04Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

XP_012836463.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Erythranthe guttata]8.55e-3198.04Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCG ENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

XP_015579873.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Ricinus communis]1.47e-31100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

XP_021658712.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Hevea brasiliensis]1.73e-3096.08Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRI+QYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

TrEMBL top hitse value%identityAlignment
A0A0A0LQM4 Uncharacterized protein7.13e-32100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

A0A1S4E4H5 DNA-directed RNA polymerases II, IV and V subunit 127.13e-32100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

A0A6J1C6Z8 DNA-directed RNA polymerases II, IV and V subunit 127.13e-32100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

A0A6J1GTY0 DNA-directed RNA polymerases II, IV and V subunit 127.13e-32100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

A0A6J1KJQ4 DNA-directed RNA polymerases II, IV and V subunit 127.13e-32100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

SwissProt top hitse value%identityAlignment
P48011 DNA-directed RNA polymerases I, II, and III subunit RPABC42.9e-1255.1Show/hide
Query:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        P+P  + Y+C DCG  NT++  +VI+CRECG+R++YK RT+R+VQ+EAR
Subjt:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

P53803 DNA-directed RNA polymerases I, II, and III subunit RPABC49.9e-1359.18Show/hide
Query:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Subjt:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

Q3ZBC0 DNA-directed RNA polymerases I, II, and III subunit RPABC49.9e-1359.18Show/hide
Query:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Subjt:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

Q63871 DNA-directed RNA polymerases I, II, and III subunit RPABC49.9e-1359.18Show/hide
Query:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Subjt:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

Q9FLM8 DNA-directed RNA polymerases II, IV and V subunit 121.8e-2288.24Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDP PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR

Arabidopsis top hitse value%identityAlignment
AT1G53690.1 DNA directed RNA polymerase, 7 kDa subunit1.0e-1273.17Show/hide
Query:  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR
        D QPE  V Y+CGDCG EN LK+GDV QCR+CG+RILYKKR
Subjt:  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR

AT5G41010.1 DNA directed RNA polymerase, 7 kDa subunit1.3e-2388.24Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDP PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTCAACCCGAGCCAGTCAGCTACATCTGTGGAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGGGAGTGTGGTTATCGTATTCT
CTACAAGAAGCGCACCCGTCGCATTGTTCAGTACGAGGCCCGCTGA
mRNA sequenceShow/hide mRNA sequence
CGAGCCCCCTTCCCTCCGTCTCTCTCATCTCGCATCCTCTCATTCTCTTTCGTCTTCGTCTTCGTCTTCGTCTCCTCTTCCTCACCTTTGACTAAAATTAATATAAGAAC
CAAAAAGTTATTTTAACATAAAAAAGAAGGGAAAAACCCTACTACACCTTCTCCTCCCTTTTATTTTTGTTTGATTTTTCCCTCACCCATCATTATTCGTATCGTCCTTG
CAGCGGTAGGAAGATTTTTGAAGCTTGACTCATGGATCCTCAACCCGAGCCAGTCAGCTACATCTGTGGAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTA
TACAGTGCCGGGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCATTGTTCAGTACGAGGCCCGCTGAAATGCTTATTCTTGCAATGGACTTCTACTAGTA
TCATGAATATTTTGTAAGTTTCTTTTAGGAAAACAAAAACAATACTCGATATGGATTAAGGACTTGCTGTAGTACAAACATGTTGATAATGCTGCTACTCTATGATTAAA
TATTTTTCGTTTCAAATGCCATTATCCCCTTGTGCTAACTCCATATCCAACTGATAATATGAATGAATGGTTTATCTCTTGATAGACTGG
Protein sequenceShow/hide protein sequence
MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR