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CsGy1G009285 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy1G009285
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationGy14Chr1:5792243..5792859
RNA-Seq ExpressionCsGy1G009285
SyntenyCsGy1G009285
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046784.1 putative mitochondrial protein [Cucumis melo var. makuwa]3.10e-4866.67Show/hide
Query:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP
        MDVLSANI TFLTQ+VP FFLP V +N GVK  LH  I SIVSLP SFK  L SK+YMV L TI   K LVV   F  ILMNT+NLN VP S   LAMA 
Subjt:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP

Query:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSL
        N K FVVG  F  D  YL MS FG+TLCSLV PPSTPPSLVL+LS  THLL FFLSL+P  I+SL
Subjt:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSL

KAA0047340.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.38e-4963.69Show/hide
Query:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP
        MDVLSANI TFLTQ+VP FFLP V +N GVK  LH  I SIV LP  FK  L  K+YMV L TI   K  V+   F  ILMNT+NLN V      LAMA 
Subjt:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP

Query:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNL
        N K F+VG  FP D  YL MS F +TLCSLVCPPSTPPSLVLNLS  THLLTFFLSL+P  I+SL NL
Subjt:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNL

KAA0050767.1 retrotransposon protein [Cucumis melo var. makuwa]4.16e-5561.11Show/hide
Query:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP
        MDV SANI TFLTQYVP FFLP   +N GVK  LH  I SIV  P  F+  L SKNY+V LPTIL  K  VVPA F  ILMNT+NLNHVP SV  LAMA 
Subjt:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP

Query:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNLHLLLQIWIHRLSPMMFLNRHLLLLFVALPG
        N K FVVG  FP D  YL MS F + LC LVCP STPPSLVLNLS  TH+L  FL L+P  ++SL NLHLL Q W +R S M  LN     L V L G
Subjt:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNLHLLLQIWIHRLSPMMFLNRHLLLLFVALPG

KAA0063009.1 Integrase, catalytic core [Cucumis melo var. makuwa]6.28e-3764.49Show/hide
Query:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP
        MDV SANI TFLTQY P FFLP   +N  VK  LH  I SI  LP  F+  L  KNYMV LPTIL  K  VV A F  ILMNT+NLNHVP SV  LAMA 
Subjt:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP

Query:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPP
        N K FVVG  FP D  YL MS FG+ LCSLVCPPSTPP
Subjt:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPP

TYK29663.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.16e-4967.88Show/hide
Query:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP
        MDVLSANI TFLTQ+VP FFLP V +N GVK  LH  I SIVSLP SFKI L SK+YMV L TI   K LVV   F  ILMNT+NLN VP S   LAMA 
Subjt:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP

Query:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSL
        N K FVVG LF  D  YL MSLFG+TLCSLV P STPPSLVL+LS  THLL FFLSL+P  I+SL
Subjt:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSL

TrEMBL top hitse value%identityAlignment
A0A5A7TUN2 Putative mitochondrial protein1.50e-4866.67Show/hide
Query:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP
        MDVLSANI TFLTQ+VP FFLP V +N GVK  LH  I SIVSLP SFK  L SK+YMV L TI   K LVV   F  ILMNT+NLN VP S   LAMA 
Subjt:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP

Query:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSL
        N K FVVG  F  D  YL MS FG+TLCSLV PPSTPPSLVL+LS  THLL FFLSL+P  I+SL
Subjt:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSL

A0A5A7TW10 Putative mitochondrial protein2.12e-4963.69Show/hide
Query:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP
        MDVLSANI TFLTQ+VP FFLP V +N GVK  LH  I SIV LP  FK  L  K+YMV L TI   K  V+   F  ILMNT+NLN V      LAMA 
Subjt:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP

Query:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNL
        N K F+VG  FP D  YL MS F +TLCSLVCPPSTPPSLVLNLS  THLLTFFLSL+P  I+SL NL
Subjt:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNL

A0A5A7U8Q0 Retrotransposon protein2.01e-5561.11Show/hide
Query:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP
        MDV SANI TFLTQYVP FFLP   +N GVK  LH  I SIV  P  F+  L SKNY+V LPTIL  K  VVPA F  ILMNT+NLNHVP SV  LAMA 
Subjt:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP

Query:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNLHLLLQIWIHRLSPMMFLNRHLLLLFVALPG
        N K FVVG  FP D  YL MS F + LC LVCP STPPSLVLNLS  TH+L  FL L+P  ++SL NLHLL Q W +R S M  LN     L V L G
Subjt:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNLHLLLQIWIHRLSPMMFLNRHLLLLFVALPG

A0A5A7VBM6 Integrase, catalytic core3.04e-3764.49Show/hide
Query:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP
        MDV SANI TFLTQY P FFLP   +N  VK  LH  I SI  LP  F+  L  KNYMV LPTIL  K  VV A F  ILMNT+NLNHVP SV  LAMA 
Subjt:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP

Query:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPP
        N K FVVG  FP D  YL MS FG+ LCSLVCPPSTPP
Subjt:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPP

A0A5D3E0Q6 Putative mitochondrial protein2.50e-4967.88Show/hide
Query:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP
        MDVLSANI TFLTQ+VP FFLP V +N GVK  LH  I SIVSLP SFKI L SK+YMV L TI   K LVV   F  ILMNT+NLN VP S   LAMA 
Subjt:  MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAP

Query:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSL
        N K FVVG LF  D  YL MSLFG+TLCSLV P STPPSLVL+LS  THLL FFLSL+P  I+SL
Subjt:  NTKDFVVGTLFPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGTGCTGAGCGCAAACATCGTCACATTCTTGACTCAGTACGTGCCCTCCTTCTTTCTGCCTCTTGTCCAGAAAAATTCTGGGGTGAAGCTGCCCTTACATCAGTA
TATACAATCAATCGTCTCCCTTCCTCTGTCCTTCAAAATACCTCTCCGTTCGAAAAACTATATGGTATTTCTCCCGACTATTCTAAACTCAAAGTTTTTGGTAGTGCCTG
CTTCGTTCTGTTACATCCTCATGAACACAATAAACTTGAACCACGTGCCCGTCTCTGTTGCTTCCTTGGCTATGGCACCGAACACAAAGGATTTCGTTGTTGGGACCCTC
TTTCCAACCGACTCCGGATATCTCGGCATGTCACTTTTTGGGAACACACTATGTTCTCTCGTTTGTCCTCCTTCCACACCTCCTTCTCTAGTCCTCAATCTTTCTTTACA
AACACATCTGTTGACCTTTTTCCTCTCTCTGAACCCACCTTGGATACTGAGCTTGCACAATCTTCACCTGCTACTGCAAATCTGGATCCACCGTCTGTCTCCGATGATGT
TCCTGAATCGCCACCTGCTACTCCTCTTCGTCGCTCTACCAGGGTAA
mRNA sequenceShow/hide mRNA sequence
CTCAACAAAATGGACGTGCTGAGCGCAAACATCGTCACATTCTTGACTCAGTACGTGCCCTCCTTCTTTCTGCCTCTTGTCCAGAAAAATTCTGGGGTGAAGCTGCCCTT
ACATCAGTATATACAATCAATCGTCTCCCTTCCTCTGTCCTTCAAAATACCTCTCCGTTCGAAAAACTATATGGTATTTCTCCCGACTATTCTAAACTCAAAGTTTTTGG
TAGTGCCTGCTTCGTTCTGTTACATCCTCATGAACACAATAAACTTGAACCACGTGCCCGTCTCTGTTGCTTCCTTGGCTATGGCACCGAACACAAAGGATTTCGTTGTT
GGGACCCTCTTTCCAACCGACTCCGGATATCTCGGCATGTCACTTTTTGGGAACACACTATGTTCTCTCGTTTGTCCTCCTTCCACACCTCCTTCTCTAGTCCTCAATCT
TTCTTTACAAACACATCTGTTGACCTTTTTCCTCTCTCTGAACCCACCTTGGATACTGAGCTTGCACAATCTTCACCTGCTACTGCAAATCTGGATCCACCGTCTGTCTC
CGATGATGTTCCTGAATCGCCACCTGCTACTCCTCTTCGTCGCTCTACCAGGGTAAGAGAACCTCCC
Protein sequenceShow/hide protein sequence
MDVLSANIVTFLTQYVPSFFLPLVQKNSGVKLPLHQYIQSIVSLPLSFKIPLRSKNYMVFLPTILNSKFLVVPASFCYILMNTINLNHVPVSVASLAMAPNTKDFVVGTL
FPTDSGYLGMSLFGNTLCSLVCPPSTPPSLVLNLSLQTHLLTFFLSLNPPWILSLHNLHLLLQIWIHRLSPMMFLNRHLLLLFVALPG