; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CsGy1G012083 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy1G012083
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationGy14Chr1:7597116..7597424
RNA-Seq ExpressionCsGy1G012083
SyntenyCsGy1G012083
Gene Ontology termsGO:0009058 - biosynthetic process (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005506 - iron ion binding (molecular function)
GO:0005515 - protein binding (molecular function)
GO:0016491 - oxidoreductase activity (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056984.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]2.18e-5186.27Show/hide
Query:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM
        MLKKSEG LA  KKKG AFNVYLKLYARNGKKDE+H IWNLYKKEKIFNKGFISMI SL +LDDI+GAE IYKEWETQKLSYD+RIPNLLVDAYCRAGL+
Subjt:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM

Query:  ES
        E 
Subjt:  ES

KAE8652713.1 hypothetical protein Csa_013388 [Cucumis sativus]2.66e-68100Show/hide
Query:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM
        MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM
Subjt:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM

Query:  ES
        ES
Subjt:  ES

XP_008442434.1 PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Cucumis melo]8.82e-5486.27Show/hide
Query:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM
        MLKKSEG LA  KKKG AFNVYLKLYARNGKKDE+H IWNLYKKEKIFNKGFISMI SL +LDDI+GAE IYKEWETQKLSYD+RIPNLLVDAYCRAGL+
Subjt:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM

Query:  ES
        E 
Subjt:  ES

XP_011653157.2 pentatricopeptide repeat-containing protein At2g20710, mitochondrial isoform X1 [Cucumis sativus]1.43e-6095.1Show/hide
Query:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM
        MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIH IWNLYKKEKIFNKGFISMITSL +LDDIKGAERIYKEWET+KLSYDLRIPNLLVDAYCRAGLM
Subjt:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM

Query:  ES
        E 
Subjt:  ES

XP_031744923.1 pentatricopeptide repeat-containing protein At2g20710, mitochondrial isoform X2 [Cucumis sativus]1.73e-6195.1Show/hide
Query:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM
        MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIH IWNLYKKEKIFNKGFISMITSL +LDDIKGAERIYKEWET+KLSYDLRIPNLLVDAYCRAGLM
Subjt:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM

Query:  ES
        E 
Subjt:  ES

TrEMBL top hitse value%identityAlignment
A0A0A0LSC2 TPR_REGION domain-containing protein8.22e-6298.98Show/hide
Query:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAG
        MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRA 
Subjt:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAG

A0A0A0LV44 Uncharacterized protein6.27e-6297.06Show/hide
Query:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM
        MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIH IWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWET+KLSYDLRIPNLLVDAYCRAGLM
Subjt:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM

Query:  ES
        E 
Subjt:  ES

A0A1S3B572 pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like4.27e-5486.27Show/hide
Query:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM
        MLKKSEG LA  KKKG AFNVYLKLYARNGKKDE+H IWNLYKKEKIFNKGFISMI SL +LDDI+GAE IYKEWETQKLSYD+RIPNLLVDAYCRAGL+
Subjt:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM

Query:  ES
        E 
Subjt:  ES

A0A5A7UP59 Pentatricopeptide repeat-containing protein1.06e-5186.27Show/hide
Query:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM
        MLKKSEG LA  KKKG AFNVYLKLYARNGKKDE+H IWNLYKKEKIFNKGFISMI SL +LDDI+GAE IYKEWETQKLSYD+RIPNLLVDAYCRAGL+
Subjt:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM

Query:  ES
        E 
Subjt:  ES

A0A5D3DSH1 Pentatricopeptide repeat-containing protein4.27e-5486.27Show/hide
Query:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM
        MLKKSEG LA  KKKG AFNVYLKLYARNGKKDE+H IWNLYKKEKIFNKGFISMI SL +LDDI+GAE IYKEWETQKLSYD+RIPNLLVDAYCRAGL+
Subjt:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLM

Query:  ES
        E 
Subjt:  ES

SwissProt top hitse value%identityAlignment
O22714 Pentatricopeptide repeat-containing protein At1g607702.8e-1134.74Show/hide
Query:  LANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKK--EKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLME
        + N ++   A+   + LY R GK  E++ IW   +    K  N  +++MI  L  L+D+ GAE ++KEW+    +YD+RI N+L+ AY + GL++
Subjt:  LANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKK--EKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLME

Q84JR3 Pentatricopeptide repeat-containing protein At4g21705, mitochondrial9.2e-1033.98Show/hide
Query:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKK--EKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAG
        +LK SE  L   KK G  +N  + LYAR GKK E+  +W+L K   ++  N+ +++++ SL  +D +  AE +  EW++    YD R+PN ++  Y    
Subjt:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKK--EKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAG

Query:  LME
        + E
Subjt:  LME

Q8LPS6 Pentatricopeptide repeat-containing protein At1g021505.2e-1336.45Show/hide
Query:  KKSEGLLANVK-----KKGFAFNVYLKLYARNGKKDEIHLIWNLYKK--EKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYC
        +K+E  L  V+     +    ++  L LY   G K E++ +W++YK     I N G+ ++++SL  + DI+GAE++Y+EW   K SYD RIPNLL++AY 
Subjt:  KKSEGLLANVK-----KKGFAFNVYLKLYARNGKKDEIHLIWNLYKK--EKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYC

Query:  RAGLMES
        +   +E+
Subjt:  RAGLMES

Q9C7F1 Putative pentatricopeptide repeat-containing protein At1g280201.5e-1238.83Show/hide
Query:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKE--KIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAG
        ML+ +E L+     K  A++  +KLY   G ++E+  +W LYK +  +  N G+ ++I SL  +DDI GAE IYK WE+  L +D RIP +L   Y   G
Subjt:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKE--KIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAG

Query:  LME
        + E
Subjt:  LME

Q9SKU6 Pentatricopeptide repeat-containing protein At2g20710, mitochondrial2.8e-1942.16Show/hide
Query:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKK-EKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGL
        ML+KSE ++ N +K+  A+ V +  Y   GKK+E++ +W+LYK+ +  +N G+IS+I++L  +DDI+  E+I +EWE     +D+RIP+LL+  YC+ G+
Subjt:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKK-EKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGL

Query:  ME
        ME
Subjt:  ME

Arabidopsis top hitse value%identityAlignment
AT1G02150.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.7e-1436.45Show/hide
Query:  KKSEGLLANVK-----KKGFAFNVYLKLYARNGKKDEIHLIWNLYKK--EKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYC
        +K+E  L  V+     +    ++  L LY   G K E++ +W++YK     I N G+ ++++SL  + DI+GAE++Y+EW   K SYD RIPNLL++AY 
Subjt:  KKSEGLLANVK-----KKGFAFNVYLKLYARNGKKDEIHLIWNLYKK--EKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYC

Query:  RAGLMES
        +   +E+
Subjt:  RAGLMES

AT1G28020.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.1e-1338.83Show/hide
Query:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKE--KIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAG
        ML+ +E L+     K  A++  +KLY   G ++E+  +W LYK +  +  N G+ ++I SL  +DDI GAE IYK WE+  L +D RIP +L   Y   G
Subjt:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKE--KIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAG

Query:  LME
        + E
Subjt:  LME

AT1G60770.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.0e-1234.74Show/hide
Query:  LANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKK--EKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLME
        + N ++   A+   + LY R GK  E++ IW   +    K  N  +++MI  L  L+D+ GAE ++KEW+    +YD+RI N+L+ AY + GL++
Subjt:  LANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKK--EKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLME

AT2G20710.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.0e-2042.16Show/hide
Query:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKK-EKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGL
        ML+KSE ++ N +K+  A+ V +  Y   GKK+E++ +W+LYK+ +  +N G+IS+I++L  +DDI+  E+I +EWE     +D+RIP+LL+  YC+ G+
Subjt:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKK-EKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGL

Query:  ME
        ME
Subjt:  ME

AT2G20710.2 Tetratricopeptide repeat (TPR)-like superfamily protein2.0e-2042.16Show/hide
Query:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKK-EKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGL
        ML+KSE ++ N +K+  A+ V +  Y   GKK+E++ +W+LYK+ +  +N G+IS+I++L  +DDI+  E+I +EWE     +D+RIP+LL+  YC+ G+
Subjt:  MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKK-EKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGL

Query:  ME
        ME
Subjt:  ME


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAAGAAATCAGAAGGTCTCCTAGCAAATGTCAAAAAGAAAGGTTTTGCATTTAATGTCTACCTCAAACTATATGCCAGAAATGGAAAGAAAGACGAGATACACCT
TATATGGAATCTCTACAAGAAAGAGAAAATCTTCAACAAAGGTTTCATCAGCATGATAACATCACTTTTTGTATTAGACGATATCAAAGGTGCGGAGCGTATTTACAAGG
AATGGGAGACCCAGAAACTGTCATACGACTTGCGGATTCCAAACTTGTTGGTTGATGCGTATTGTAGAGCTGGTCTAATGGAGAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGAAGAAATCAGAAGGTCTCCTAGCAAATGTCAAAAAGAAAGGTTTTGCATTTAATGTCTACCTCAAACTATATGCCAGAAATGGAAAGAAAGACGAGATACACCT
TATATGGAATCTCTACAAGAAAGAGAAAATCTTCAACAAAGGTTTCATCAGCATGATAACATCACTTTTTGTATTAGACGATATCAAAGGTGCGGAGCGTATTTACAAGG
AATGGGAGACCCAGAAACTGTCATACGACTTGCGGATTCCAAACTTGTTGGTTGATGCGTATTGTAGAGCTGGTCTAATGGAGAGCTGA
Protein sequenceShow/hide protein sequence
MLKKSEGLLANVKKKGFAFNVYLKLYARNGKKDEIHLIWNLYKKEKIFNKGFISMITSLFVLDDIKGAERIYKEWETQKLSYDLRIPNLLVDAYCRAGLMES