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CsGy1G012995 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy1G012995
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationGy14Chr1:8426236..8427235
RNA-Seq ExpressionCsGy1G012995
SyntenyCsGy1G012995
Gene Ontology termsGO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0005515 - protein binding (molecular function)
GO:0022857 - transmembrane transporter activity (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN64768.2 hypothetical protein Csa_013273 [Cucumis sativus]1.42e-63100Show/hide
Query:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK
        MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK
Subjt:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK

Query:  NMLVTQ
        NMLVTQ
Subjt:  NMLVTQ

XP_008464861.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis melo]2.15e-5995.28Show/hide
Query:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK
        MCSLGA LT YSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFS+MKTHD VSWTSIISGLSQNGCGSEAILMFK
Subjt:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK

Query:  NMLVTQ
         MLVTQ
Subjt:  NMLVTQ

XP_011653616.1 pentatricopeptide repeat-containing protein At2g13600 [Cucumis sativus]5.04e-64100Show/hide
Query:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK
        MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK
Subjt:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK

Query:  NMLVTQ
        NMLVTQ
Subjt:  NMLVTQ

XP_023521522.1 pentatricopeptide repeat-containing protein At2g13600-like [Cucurbita pepo subsp. pepo]6.00e-5486.92Show/hide
Query:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK
        MCSLGA LTKYSLCSAL+SCAKT NLFLGLQIHAQIVKIGFE+NL+LNS+LV+LYSKCNAIV+AKR+F  MKTHD VSWTSIISGLSQNG G EAILMFK
Subjt:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK

Query:  NMLVTQD
        NMLVTQD
Subjt:  NMLVTQD

XP_038896055.1 pentatricopeptide repeat-containing protein At3g12770-like [Benincasa hispida]1.32e-6096.23Show/hide
Query:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK
        MCSLGA LTKYSLCSAL+SCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFS MKTHD VSWTSIISGLSQNGCGSEAILMFK
Subjt:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK

Query:  NMLVTQ
        NMLVTQ
Subjt:  NMLVTQ

TrEMBL top hitse value%identityAlignment
A0A1S3CML0 pentatricopeptide repeat-containing protein At2g13600-like1.04e-5995.28Show/hide
Query:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK
        MCSLGA LT YSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFS+MKTHD VSWTSIISGLSQNGCGSEAILMFK
Subjt:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK

Query:  NMLVTQ
         MLVTQ
Subjt:  NMLVTQ

A0A5A7UEE6 Pentatricopeptide repeat-containing protein1.04e-5995.28Show/hide
Query:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK
        MCSLGA LT YSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFS+MKTHD VSWTSIISGLSQNGCGSEAILMFK
Subjt:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK

Query:  NMLVTQ
         MLVTQ
Subjt:  NMLVTQ

A0A6J1DYD1 pentatricopeptide repeat-containing protein At2g13600-like7.26e-4982.08Show/hide
Query:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK
        MC LGA LTKY+LCSAL+SCAKT NLF GLQIHAQIVKIG EENLFLNS+LVDLY+KCNAIV+AKRVF  M+THD VSWTS+ISGLS+NG GSEAI MFK
Subjt:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK

Query:  NMLVTQ
         MLVTQ
Subjt:  NMLVTQ

A0A6J1GA23 pentatricopeptide repeat-containing protein At2g13600-like4.08e-5486.92Show/hide
Query:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK
        MCSLGA LTKYSLCSAL+SCAKT NLFLGLQIHAQIVKIGFE+NL+LNS LV+LYSKCNAIV+AKR+F  MKTHD VSWTSIISGLSQNG G EAILMFK
Subjt:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK

Query:  NMLVTQD
        NMLVTQD
Subjt:  NMLVTQD

A0A6J1K975 pentatricopeptide repeat-containing protein At2g13600-like4.08e-5486.92Show/hide
Query:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK
        MCSLGA LTKYSLCSAL+SCAKT NLFLGLQIHAQIVKIGFE+NL+LNS LV+LYSKCNAIV+AKR+F  MKTHD VSWTSIISGLSQNG G EAILMFK
Subjt:  MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFK

Query:  NMLVTQD
        NMLVTQD
Subjt:  NMLVTQD

SwissProt top hitse value%identityAlignment
A8MQA3 Pentatricopeptide repeat-containing protein At4g210652.4e-1642.71Show/hide
Query:  YSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ
        +++ S LS+CAK   L LG ++H  ++K+G   NL  ++ L+DLY++C  +  AK +F +M   + VSWTS+I GL+ NG G EAI +FK M  T+
Subjt:  YSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ

O80647 Pentatricopeptide repeat-containing protein At2g396201.8e-1640.86Show/hide
Query:  KYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNM
        KYS   AL +CA + +   GL+IH  I ++G E ++++ ++LV++Y K   +V+A++VF +M   D V+W +++SGL+QNGC S A+L+F +M
Subjt:  KYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNM

Q9LW63 Putative pentatricopeptide repeat-containing protein At3g233302.6e-1543.18Show/hide
Query:  SALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNM
        S + +CA    L LG Q+H  +++ GF  N+F+ S+LVD+YSKC  I  A+++F +M   D VSWT+II G + +G G EA+ +F+ M
Subjt:  SALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNM

Q9SI53 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial1.4e-1643.88Show/hide
Query:  GAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNM
        G I  + +L S L +C     L LG+Q H  IVK  ++++L LN++LVD+Y KC ++ +A RVF+QMK  D ++W+++ISGL+QNG   EA+ +F+ M
Subjt:  GAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNM

Q9SIT7 Pentatricopeptide repeat-containing protein At2g136001.2e-1540.4Show/hide
Query:  GAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNML
        G +L +YS  S LS+C+  +++  G+Q+H+ I K  F  ++++ S+LVD+YSKC  + +A+RVF +M   + VSW S+I+   QNG   EA+ +F+ ML
Subjt:  GAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNML

Arabidopsis top hitse value%identityAlignment
AT2G03880.1 Pentatricopeptide repeat (PPR) superfamily protein9.9e-1843.88Show/hide
Query:  GAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNM
        G I  + +L S L +C     L LG+Q H  IVK  ++++L LN++LVD+Y KC ++ +A RVF+QMK  D ++W+++ISGL+QNG   EA+ +F+ M
Subjt:  GAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNM

AT2G13600.1 Pentatricopeptide repeat (PPR) superfamily protein8.4e-1740.4Show/hide
Query:  GAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNML
        G +L +YS  S LS+C+  +++  G+Q+H+ I K  F  ++++ S+LVD+YSKC  + +A+RVF +M   + VSW S+I+   QNG   EA+ +F+ ML
Subjt:  GAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNML

AT2G39620.1 Pentatricopeptide repeat (PPR) superfamily protein1.3e-1740.86Show/hide
Query:  KYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNM
        KYS   AL +CA + +   GL+IH  I ++G E ++++ ++LV++Y K   +V+A++VF +M   D V+W +++SGL+QNGC S A+L+F +M
Subjt:  KYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNM

AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.7e-1742.71Show/hide
Query:  YSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ
        +++ S LS+CAK   L LG ++H  ++K+G   NL  ++ L+DLY++C  +  AK +F +M   + VSWTS+I GL+ NG G EAI +FK M  T+
Subjt:  YSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ

AT4G21065.2 Tetratricopeptide repeat (TPR)-like superfamily protein1.7e-1742.71Show/hide
Query:  YSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ
        +++ S LS+CAK   L LG ++H  ++K+G   NL  ++ L+DLY++C  +  AK +F +M   + VSWTS+I GL+ NG G EAI +FK M  T+
Subjt:  YSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAGCTTAGGAGCAATATTGACCAAGTATTCTCTGTGCTCTGCTCTTAGTTCTTGTGCTAAAACACATAATCTGTTTTTGGGTTTGCAAATTCATGCTCAAATCGT
CAAAATCGGATTTGAAGAGAACTTATTTTTGAACAGTTCACTGGTTGATTTATACTCCAAATGTAATGCCATTGTGAATGCCAAAAGGGTCTTCTCTCAGATGAAGACTC
ATGACCATGTATCTTGGACTTCTATAATATCAGGGCTTTCTCAAAATGGTTGTGGTAGTGAAGCCATCCTGATGTTCAAGAATATGTTGGTAACTCAGGATTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGCAGCTTAGGAGCAATATTGACCAAGTATTCTCTGTGCTCTGCTCTTAGTTCTTGTGCTAAAACACATAATCTGTTTTTGGGTTTGCAAATTCATGCTCAAATCGT
CAAAATCGGATTTGAAGAGAACTTATTTTTGAACAGTTCACTGGTTGATTTATACTCCAAATGTAATGCCATTGTGAATGCCAAAAGGGTCTTCTCTCAGATGAAGACTC
ATGACCATGTATCTTGGACTTCTATAATATCAGGGCTTTCTCAAAATGGTTGTGGTAGTGAAGCCATCCTGATGTTCAAGAATATGTTGGTAACTCAGGATTACTAG
Protein sequenceShow/hide protein sequence
MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQDY