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CsGy1G016280 (gene) of Cucumber (Gy14) v2.1 genome

Gene IDCsGy1G016280
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionNucleoid-associated protein
Genome locationGy14Chr1:13250204..13252023
RNA-Seq ExpressionCsGy1G016280
SyntenyCsGy1G016280
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR004401 - Nucleoid-associated protein YbaB/EbfC family
IPR036894 - Nucleoid-associated protein YbaB-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7035685.1 Nucleoid-associated protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]4.59e-5682.79Show/hide
Query:  KSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAM
        KSDDAPSK  +   MQKLYETVRTAQ+VVQVEAVRVQKELA AEFDGYCEGELIKVTLSGNQQP+RTEITEAAM+LG       +TEAYQDAHQKSV AM
Subjt:  KSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAM

Query:  KQRMSDLAQSLGIAQGLSEGLK
        KQRMSDLAQSLG+ QGLSEGLK
Subjt:  KQRMSDLAQSLGIAQGLSEGLK

XP_004146679.1 nucleoid-associated protein At2g24020, chloroplastic [Cucumis sativus]3.24e-5984.25Show/hide
Query:  KRMRKKSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQK
        K+  +KSDDAPSK  +   MQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELG       +TEAYQDAHQK
Subjt:  KRMRKKSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQK

Query:  SVLAMKQRMSDLAQSLGIAQGLSEGLK
        SVLAMKQRMSDLAQSLG+ QGLSEGLK
Subjt:  SVLAMKQRMSDLAQSLGIAQGLSEGLK

XP_008443852.1 PREDICTED: nucleoid-associated protein At2g24020, chloroplastic-like [Cucumis melo]2.65e-5883.46Show/hide
Query:  KRMRKKSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQK
        K+  +KSDDAPSK  +   MQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELG       +TEAYQDAHQK
Subjt:  KRMRKKSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQK

Query:  SVLAMKQRMSDLAQSLGIAQGLSEGLK
        SV AMKQRMSDLAQSLG+ QGLSEGLK
Subjt:  SVLAMKQRMSDLAQSLGIAQGLSEGLK

XP_038879412.1 nucleoid-associated protein At4g30620, chloroplastic isoform X1 [Benincasa hispida]9.45e-5885.25Show/hide
Query:  KSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAM
        KSDDAPSK  +   MQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQP+RTEITEAAMELG       +TEAYQDAHQKSV AM
Subjt:  KSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAM

Query:  KQRMSDLAQSLGIAQGLSEGLK
        KQRMSDLAQSLG+ QGLSEGLK
Subjt:  KQRMSDLAQSLGIAQGLSEGLK

XP_038879413.1 nucleoid-associated protein At4g30620, chloroplastic isoform X2 [Benincasa hispida]7.81e-5885.25Show/hide
Query:  KSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAM
        KSDDAPSK  +   MQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQP+RTEITEAAMELG       +TEAYQDAHQKSV AM
Subjt:  KSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAM

Query:  KQRMSDLAQSLGIAQGLSEGLK
        KQRMSDLAQSLG+ QGLSEGLK
Subjt:  KQRMSDLAQSLGIAQGLSEGLK

TrEMBL top hitse value%identityAlignment
A0A0A0LWF8 Uncharacterized protein1.57e-5984.25Show/hide
Query:  KRMRKKSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQK
        K+  +KSDDAPSK  +   MQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELG       +TEAYQDAHQK
Subjt:  KRMRKKSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQK

Query:  SVLAMKQRMSDLAQSLGIAQGLSEGLK
        SVLAMKQRMSDLAQSLG+ QGLSEGLK
Subjt:  SVLAMKQRMSDLAQSLGIAQGLSEGLK

A0A1S3B9T2 nucleoid-associated protein At2g24020, chloroplastic-like1.28e-5883.46Show/hide
Query:  KRMRKKSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQK
        K+  +KSDDAPSK  +   MQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELG       +TEAYQDAHQK
Subjt:  KRMRKKSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQK

Query:  SVLAMKQRMSDLAQSLGIAQGLSEGLK
        SV AMKQRMSDLAQSLG+ QGLSEGLK
Subjt:  SVLAMKQRMSDLAQSLGIAQGLSEGLK

A0A5A7SUZ8 Nucleoid-associated protein1.28e-5883.46Show/hide
Query:  KRMRKKSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQK
        K+  +KSDDAPSK  +   MQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELG       +TEAYQDAHQK
Subjt:  KRMRKKSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQK

Query:  SVLAMKQRMSDLAQSLGIAQGLSEGLK
        SV AMKQRMSDLAQSLG+ QGLSEGLK
Subjt:  SVLAMKQRMSDLAQSLGIAQGLSEGLK

A0A6J1EW88 nucleoid-associated protein At4g30620, chloroplastic-like isoform X12.52e-5682.79Show/hide
Query:  KSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAM
        KSDDAPSK  +   MQKLYETVRTAQ+VVQVEAVRVQKELA AEFDGYCEGELIKVTLSGNQQP+RTEITEAAM+LG       +TEAYQDAHQKSV AM
Subjt:  KSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAM

Query:  KQRMSDLAQSLGIAQGLSEGLK
        KQRMSDLAQSLG+ QGLSEGLK
Subjt:  KQRMSDLAQSLGIAQGLSEGLK

A0A6J1HN29 nucleoid-associated protein At4g30620, chloroplastic-like isoform X12.52e-5682.79Show/hide
Query:  KSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAM
        KSDDAPSK  +   MQKLYETVRTAQ+VVQVEAVRVQKELA AEFDGYCEGELIKVTLSGNQQP+RTEITEAAM+LG       +TEAYQDAHQKSV AM
Subjt:  KSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAM

Query:  KQRMSDLAQSLGIAQGLSEGLK
        KQRMSDLAQSLG+ QGLSEGLK
Subjt:  KQRMSDLAQSLGIAQGLSEGLK

SwissProt top hitse value%identityAlignment
O82230 Nucleoid-associated protein At2g24020, chloroplastic5.2e-3972.73Show/hide
Query:  SDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAMK
        S+D  SK  +   MQ +YETV+ AQ VVQVEAVRVQKELAAAEFDGYC GEL+KVTLSGNQQPIRT+ITEAAMELG+      +TEAY+DAH KSV+AMK
Subjt:  SDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAMK

Query:  QRMSDLAQSLGIAQGLSEGLK
        +RMSDLAQSLG+  GLSEG+K
Subjt:  QRMSDLAQSLGIAQGLSEGLK

Q5N376 Nucleoid-associated protein syc1054_d6.6e-1040Show/hide
Query:  EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAMKQRMSDLAQSLGI
        +M++L +  + AQ+ VQ  A +VQ++L   E +G  +G L+KV +SGNQ+P+R EI   A+  G       +  A +DA+QKS  AMK++M  L   LGI
Subjt:  EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAMKQRMSDLAQSLGI

Q7V3Q0 Nucleoid-associated protein PMM00201.2e-0839.08Show/hide
Query:  KVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAM-----ELGTRITEAYQDAHQKSVLAMKQRMSDLAQSLGI
        K +Q  A ++Q EL + E +G  + E+IKV +SGNQ P+R E+ E        E+   I EA + AH+ S   MK+RM+DL   L +
Subjt:  KVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAM-----ELGTRITEAYQDAHQKSVLAMKQRMSDLAQSLGI

Q8GMT0 Nucleoid-associated protein Synpcc7942_04646.6e-1040Show/hide
Query:  EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAMKQRMSDLAQSLGI
        +M++L +  + AQ+ VQ  A +VQ++L   E +G  +G L+KV +SGNQ+P+R EI   A+  G       +  A +DA+QKS  AMK++M  L   LGI
Subjt:  EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAMKQRMSDLAQSLGI

Q9M098 Nucleoid-associated protein At4g30620, chloroplastic1.4e-3669.35Show/hide
Query:  RKKSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVL
        +   +D  SK  +   MQ LYETV+ AQ VVQVEAVRVQKELA AEFDGYC+GEL+KVTLSGNQQPIRT+IT+AAMELG+      +TEAY+DAH KSVL
Subjt:  RKKSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVL

Query:  AMKQRMSDLAQSLGIAQGLSEGLK
        AMK+RMSDLAQSLG+  GL +GLK
Subjt:  AMKQRMSDLAQSLGIAQGLSEGLK

Arabidopsis top hitse value%identityAlignment
AT2G24020.1 Uncharacterised BCR, YbaB family COG07183.7e-4072.73Show/hide
Query:  SDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAMK
        S+D  SK  +   MQ +YETV+ AQ VVQVEAVRVQKELAAAEFDGYC GEL+KVTLSGNQQPIRT+ITEAAMELG+      +TEAY+DAH KSV+AMK
Subjt:  SDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAMK

Query:  QRMSDLAQSLGIAQGLSEGLK
        +RMSDLAQSLG+  GLSEG+K
Subjt:  QRMSDLAQSLGIAQGLSEGLK

AT2G24020.2 Uncharacterised BCR, YbaB family COG07183.7e-4072.73Show/hide
Query:  SDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAMK
        S+D  SK  +   MQ +YETV+ AQ VVQVEAVRVQKELAAAEFDGYC GEL+KVTLSGNQQPIRT+ITEAAMELG+      +TEAY+DAH KSV+AMK
Subjt:  SDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVLAMK

Query:  QRMSDLAQSLGIAQGLSEGLK
        +RMSDLAQSLG+  GLSEG+K
Subjt:  QRMSDLAQSLGIAQGLSEGLK

AT4G30620.1 Uncharacterised BCR, YbaB family COG07181.0e-3769.35Show/hide
Query:  RKKSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVL
        +   +D  SK  +   MQ LYETV+ AQ VVQVEAVRVQKELA AEFDGYC+GEL+KVTLSGNQQPIRT+IT+AAMELG+      +TEAY+DAH KSVL
Subjt:  RKKSDDAPSKESL--EMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTR-----ITEAYQDAHQKSVL

Query:  AMKQRMSDLAQSLGIAQGLSEGLK
        AMK+RMSDLAQSLG+  GL +GLK
Subjt:  AMKQRMSDLAQSLGIAQGLSEGLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTATTTGGAGGAAAAAAGGATGAGGAAGAAGAGTGATGATGCACCTTCAAAGGAATCTTTGGAAATGCAGAAGTTATATGAAACTGTGAGGACAGCGCAAAAGGT
TGTCCAAGTAGAGGCAGTACGTGTACAAAAAGAACTTGCAGCGGCAGAGTTTGATGGCTACTGTGAAGGAGAGCTAATAAAGGTGACATTGTCCGGGAATCAGCAACCTA
TTCGCACGGAGATAACGGAGGCTGCAATGGAATTAGGAACCAGAATTACTGAAGCTTATCAGGACGCACATCAGAAGAGCGTTCTGGCCATGAAACAAAGAATGAGTGAT
CTTGCCCAGAGCTTAGGCATTGCCCAGGGACTCAGTGAGGGATTAAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCTATTTGGAGGAAAAAAGGATGAGGAAGAAGAGTGATGATGCACCTTCAAAGGAATCTTTGGAAATGCAGAAGTTATATGAAACTGTGAGGACAGCGCAAAAGGT
TGTCCAAGTAGAGGCAGTACGTGTACAAAAAGAACTTGCAGCGGCAGAGTTTGATGGCTACTGTGAAGGAGAGCTAATAAAGGTGACATTGTCCGGGAATCAGCAACCTA
TTCGCACGGAGATAACGGAGGCTGCAATGGAATTAGGAACCAGAATTACTGAAGCTTATCAGGACGCACATCAGAAGAGCGTTCTGGCCATGAAACAAAGAATGAGTGAT
CTTGCCCAGAGCTTAGGCATTGCCCAGGGACTCAGTGAGGGATTAAAGTAG
Protein sequenceShow/hide protein sequence
MVYLEEKRMRKKSDDAPSKESLEMQKLYETVRTAQKVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPIRTEITEAAMELGTRITEAYQDAHQKSVLAMKQRMSD
LAQSLGIAQGLSEGLK